Wall clock time and date at job start Sat Apr 11 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.53555 * 2 1 4 4 N 1.47319 * 110.59511 * 237.00840 * 2 1 3 5 5 C 1.34526 * 106.61422 * 241.24913 * 4 2 1 6 6 O 1.21543 * 123.76717 * 180.20845 * 5 4 2 7 7 N 1.33787 * 112.46277 * 0.38417 * 5 4 2 8 8 C 1.46500 * 124.18130 * 179.86018 * 7 5 4 9 9 C 1.52997 * 109.47473 * 269.70212 * 8 7 5 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 O 1.45198 * 109.46884 * 180.02562 * 10 9 8 12 12 C 1.34231 * 116.99983 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00142 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99870 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47065 * 179.97438 * 14 12 11 16 16 C 1.52997 * 109.47458 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47458 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.47065 * 180.02562 * 17 16 15 19 19 H 1.07994 * 120.00127 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99841 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00192 * 179.97438 * 20 18 17 22 22 Si 1.86806 * 119.99877 * 359.97438 * 20 18 17 23 23 H 1.48494 * 109.46846 * 90.00637 * 22 20 18 24 24 H 1.48503 * 109.47024 * 210.00244 * 22 20 18 25 25 H 1.48497 * 109.47104 * 330.00190 * 22 20 18 26 26 C 1.34762 * 111.64272 * 359.59632 * 7 5 4 27 27 O 1.21233 * 127.16150 * 180.19654 * 26 7 5 28 28 H 1.08998 * 109.46741 * 297.16517 * 1 2 3 29 29 H 1.08992 * 109.47162 * 57.16594 * 1 2 3 30 30 H 1.09002 * 109.47073 * 177.16583 * 1 2 3 31 31 H 1.09003 * 109.46873 * 182.82764 * 3 2 1 32 32 H 1.08993 * 109.47143 * 302.83123 * 3 2 1 33 33 H 1.09003 * 109.46777 * 62.83521 * 3 2 1 34 34 H 0.96989 * 126.69291 * 61.43905 * 4 2 1 35 35 H 1.09002 * 109.47129 * 149.69955 * 8 7 5 36 36 H 1.08998 * 109.46845 * 29.70762 * 8 7 5 37 37 H 1.09002 * 109.47153 * 59.99757 * 9 8 7 38 38 H 1.09001 * 109.46832 * 299.99948 * 9 8 7 39 39 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 40 40 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 41 41 H 1.09005 * 109.47107 * 299.99311 * 14 12 11 42 42 H 1.08998 * 109.47871 * 59.99674 * 14 12 11 43 43 H 1.09001 * 109.47487 * 299.99879 * 15 14 12 44 44 H 1.08998 * 109.47295 * 59.99586 * 15 14 12 45 45 H 1.09001 * 109.47474 * 300.00328 * 16 15 14 46 46 H 1.09008 * 109.46853 * 59.99733 * 16 15 14 47 47 H 1.09005 * 109.46784 * 300.00147 * 17 16 15 48 48 H 1.08998 * 109.47295 * 59.99994 * 17 16 15 49 49 H 0.96995 * 119.99857 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0482 -0.7509 -1.1567 5 6 2.7640 -1.7761 -0.6603 6 8 3.3369 -2.5966 -1.3502 7 7 2.7715 -1.7940 0.6774 8 6 3.4687 -2.7994 1.4832 9 6 2.5253 -3.9703 1.7658 10 6 3.2533 -5.0200 2.6079 11 8 2.3581 -6.1314 2.8755 12 6 2.8465 -7.1443 3.6085 13 8 3.9844 -7.1038 4.0127 14 6 1.9758 -8.3326 3.9263 15 6 2.7685 -9.3353 4.7673 16 6 1.8845 -10.5414 5.0905 17 6 2.6774 -11.5444 5.9310 18 6 1.8067 -12.7326 6.2488 19 1 0.7895 -12.7687 5.8879 20 6 2.3085 -13.7733 7.0013 21 7 1.5486 -14.8101 7.2791 22 14 4.0678 -13.7106 7.6262 23 1 4.0961 -13.0600 8.9607 24 1 4.6032 -15.0913 7.7372 25 1 4.9026 -12.9307 6.6774 26 6 2.0634 -0.7694 1.1921 27 8 1.8886 -0.5161 2.3648 28 1 -0.3633 0.4692 0.9143 29 1 -0.3633 0.5572 -0.8634 30 1 -0.3633 -1.0264 -0.0508 31 1 3.1554 1.4129 -0.0507 32 1 1.6724 1.9684 -0.8635 33 1 1.7548 1.9375 0.9144 34 1 1.9040 -0.5446 -2.0933 35 1 3.7865 -2.3532 2.4256 36 1 4.3419 -3.1594 0.9391 37 1 2.2075 -4.4165 0.8234 38 1 1.6522 -3.6102 2.3099 39 1 4.1266 -5.3802 2.0641 40 1 3.5706 -4.5736 3.5501 41 1 1.0997 -8.0022 4.4845 42 1 1.6575 -8.8084 2.9988 43 1 3.6444 -9.6657 4.2089 44 1 3.0871 -8.8598 5.6949 45 1 1.0088 -10.2108 5.6491 46 1 1.5655 -11.0171 4.1630 47 1 3.5528 -11.8749 5.3719 48 1 2.9967 -11.0690 6.8584 49 1 1.9018 -15.5424 7.8082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805698501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:40 Heat of formation + Delta-G solvation = -181.533232 kcal Electronic energy + Delta-G solvation = -28439.927244 eV Core-core repulsion = 24173.260019 eV Total energy + Delta-G solvation = -4266.667225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.65815 -41.56766 -39.81704 -38.23401 -37.74043 -36.91920 -36.63721 -34.65615 -33.89933 -32.30135 -31.95271 -28.56301 -28.45479 -27.42350 -25.29838 -24.38114 -23.39856 -22.44968 -21.93798 -21.55821 -21.30276 -19.13161 -18.89255 -18.55614 -17.99164 -17.91723 -17.45185 -17.20327 -16.78580 -16.54835 -16.46658 -16.27586 -15.62856 -15.48174 -15.36347 -14.83628 -14.64285 -14.37192 -14.32776 -13.96331 -13.72559 -13.67606 -13.66690 -13.52886 -13.28062 -13.13838 -12.88065 -12.74060 -12.57358 -12.41613 -12.36149 -12.13055 -11.94903 -11.76003 -11.73065 -11.60100 -11.40029 -11.33764 -11.25791 -11.22338 -11.03411 -10.75416 -10.55391 -8.29035 -6.32349 0.48100 1.00935 1.15971 1.35567 1.37169 1.49667 1.60664 1.87387 2.07409 2.36483 2.81202 3.06586 3.47610 3.54793 3.67097 3.73926 3.75862 3.88875 3.99944 4.04345 4.09465 4.25484 4.33463 4.33959 4.43972 4.55380 4.60187 4.60931 4.65834 4.73036 4.73947 4.74025 4.80863 4.89970 4.91843 5.09766 5.11043 5.17642 5.18508 5.21377 5.39467 5.59591 5.64952 5.68828 5.76832 5.91666 6.26827 6.30067 6.70319 6.76063 7.02492 7.32584 8.87612 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.031234 B = 0.001395 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.242396 B =20071.493211 C =20177.039859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 C -0.145 4.145 4 N -0.701 5.701 5 C 0.699 3.301 6 O -0.578 6.578 7 N -0.578 5.578 8 C 0.118 3.882 9 C -0.123 4.123 10 C 0.067 3.933 11 O -0.359 6.359 12 C 0.467 3.533 13 O -0.539 6.539 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.095 4.095 17 C -0.017 4.017 18 C -0.532 4.532 19 H 0.036 0.964 20 C 0.004 3.996 21 N -0.951 5.951 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.251 1.251 26 C 0.524 3.476 27 O -0.486 6.486 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.452 0.548 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.016 0.984 48 H 0.015 0.985 49 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.604 40.967 -20.114 45.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.034 3.966 3 C -0.202 4.202 4 N -0.367 5.367 5 C 0.399 3.601 6 O -0.454 6.454 7 N -0.324 5.324 8 C -0.003 4.003 9 C -0.161 4.161 10 C -0.008 4.008 11 O -0.276 6.276 12 C 0.312 3.688 13 O -0.429 6.429 14 C -0.144 4.144 15 C -0.139 4.139 16 C -0.133 4.133 17 C -0.054 4.054 18 C -0.570 4.570 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.772 3.228 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.174 1.174 26 C 0.312 3.688 27 O -0.357 6.357 28 H 0.106 0.894 29 H 0.126 0.874 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.299 0.701 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.034 0.966 48 H 0.033 0.967 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.015 40.520 -19.588 45.006 hybrid contribution 0.741 -0.722 0.222 1.058 sum 0.726 39.799 -19.366 44.266 Atomic orbital electron populations 1.22063 0.88315 1.03989 1.06025 1.21647 0.98359 0.94550 0.82079 1.22055 1.01775 0.90384 1.06028 1.45667 1.53244 1.27704 1.10045 1.16028 0.79907 0.82594 0.81540 1.91027 1.49926 1.42937 1.61552 1.46435 1.49612 1.28353 1.07963 1.21565 0.94958 0.87156 0.96611 1.21723 0.99455 0.94146 1.00772 1.22956 0.92232 0.84917 1.00661 1.86484 1.45895 1.29373 1.65874 1.24277 0.87058 0.83750 0.73760 1.90660 1.21255 1.79789 1.51172 1.21511 0.98638 0.90116 1.04090 1.21391 0.98222 0.94737 0.99595 1.21335 0.98036 0.94254 0.99631 1.19576 0.95928 0.94103 0.95841 1.21561 0.99466 1.03474 1.32529 0.94519 1.25997 1.02387 0.94803 0.96061 1.70064 1.38838 1.09532 1.40774 0.85685 0.79955 0.77624 0.79558 1.19221 1.20847 1.17435 1.21424 0.76639 0.80226 0.90542 1.90810 1.57260 1.69678 1.17902 0.89388 0.87369 0.92163 0.91940 0.87413 0.89363 0.70064 0.87161 0.87653 0.90532 0.90248 0.90556 0.90281 0.85495 0.85602 0.92269 0.92138 0.92188 0.92269 0.96594 0.96657 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.30 8.98 71.98 0.65 0.34 16 2 C 0.12 0.65 1.37 2.98 0.00 0.65 16 3 C -0.14 -0.18 8.99 71.98 0.65 0.47 16 4 N -0.70 -4.50 5.91 -439.80 -2.60 -7.10 16 5 C 0.70 10.36 8.62 179.44 1.55 11.91 16 6 O -0.58 -13.11 17.48 -3.85 -0.07 -13.18 16 7 N -0.58 -8.00 2.60 -773.14 -2.01 -10.01 16 8 C 0.12 1.58 5.70 86.38 0.49 2.07 16 9 C -0.12 -1.85 5.92 30.59 0.18 -1.67 16 10 C 0.07 1.23 5.47 71.98 0.39 1.62 16 11 O -0.36 -8.19 10.22 -51.42 -0.53 -8.72 16 12 C 0.47 12.23 7.96 71.24 0.57 12.79 16 13 O -0.54 -17.47 15.73 21.98 0.35 -17.12 16 14 C -0.11 -2.49 5.81 29.85 0.17 -2.32 16 15 C -0.10 -3.16 4.50 30.59 0.14 -3.02 16 16 C -0.09 -3.57 5.15 30.59 0.16 -3.41 16 17 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 18 C -0.53 -31.28 9.66 25.60 0.25 -31.03 16 19 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 20 C 0.00 0.25 5.47 84.65 0.46 0.71 16 21 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 22 Si 0.95 45.70 27.47 68.60 1.88 47.59 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 26 C 0.52 6.64 6.98 87.94 0.61 7.25 16 27 O -0.49 -8.75 17.76 -2.88 -0.05 -8.80 16 28 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 33 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.45 0.65 8.96 -92.72 -0.83 -0.18 16 35 H 0.11 1.24 8.00 -2.39 -0.02 1.23 16 36 H 0.11 1.36 7.85 -2.39 -0.02 1.34 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.08 1.40 8.13 -2.39 -0.02 1.38 16 40 H 0.08 1.39 8.13 -2.39 -0.02 1.37 16 41 H 0.13 2.46 8.14 -2.38 -0.02 2.45 16 42 H 0.13 2.47 8.14 -2.39 -0.02 2.46 16 43 H 0.06 1.92 8.10 -2.39 -0.02 1.90 16 44 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 47 H 0.02 0.75 7.20 -2.38 -0.02 0.74 16 48 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 49 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -81.32 412.57 3.72 -77.60 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 0.06 Total: 4.42 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 6.39 Total: -4.33 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -4.31 Total: -77.46 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.30 Total: -47.82 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.59 kcal Total: -81.32 3.72 -77.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805698501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.937 kcal (2) G-P(sol) polarization free energy of solvation -81.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds