Wall clock time and date at job start Sat Apr 11 2020 06:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99789 * 2 1 4 4 H 1.48497 * 109.47445 * 274.99971 * 3 2 1 5 5 H 1.48502 * 109.47035 * 35.00453 * 3 2 1 6 6 H 1.48506 * 109.46924 * 154.99731 * 3 2 1 7 7 C 1.37870 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00573 * 184.92884 * 7 2 1 9 9 C 1.50699 * 119.99828 * 4.92820 * 7 2 1 10 10 O 1.42908 * 110.88718 * 298.63461 * 9 7 2 11 11 C 1.55162 * 111.00760 * 174.75704 * 9 7 2 12 12 C 1.54327 * 102.94288 * 206.38770 * 11 9 7 13 13 N 1.47022 * 107.26932 * 22.18610 * 12 11 9 14 14 C 1.34776 * 125.64315 * 181.02585 * 13 12 11 15 15 O 1.21588 * 119.99644 * 180.02562 * 14 13 12 16 16 N 1.34776 * 120.00320 * 0.02562 * 14 13 12 17 17 C 1.46497 * 120.00173 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.47381 * 180.02562 * 17 16 14 19 19 H 1.09006 * 110.28039 * 60.66644 * 18 17 16 20 20 C 1.54494 * 110.32536 * 182.89873 * 18 17 16 21 21 O 1.44961 * 103.00870 * 140.59584 * 20 18 17 22 22 C 1.43650 * 103.18745 * 324.28029 * 21 20 18 23 23 C 1.53258 * 110.56993 * 277.17277 * 22 21 20 24 24 C 1.54438 * 106.41011 * 239.81188 * 23 22 21 25 25 C 1.55035 * 104.16305 * 336.52918 * 24 23 22 26 26 C 1.53653 * 110.33727 * 158.70829 * 22 21 20 27 27 O 1.43052 * 107.16480 * 38.15020 * 22 21 20 28 28 C 1.47425 * 108.70828 * 1.29130 * 13 12 11 29 29 H 0.97005 * 119.99827 * 0.02562 * 1 2 3 30 30 H 0.96700 * 113.99800 * 56.11425 * 10 9 7 31 31 H 1.08996 * 110.72115 * 88.01730 * 11 9 7 32 32 H 1.09005 * 110.71513 * 324.74311 * 11 9 7 33 33 H 1.09003 * 109.87447 * 262.77144 * 12 11 9 34 34 H 1.08998 * 109.88075 * 141.60899 * 12 11 9 35 35 H 0.97007 * 119.99926 * 0.02562 * 16 14 13 36 36 H 1.08997 * 109.47112 * 60.00478 * 17 16 14 37 37 H 1.09002 * 109.47099 * 300.00299 * 17 16 14 38 38 H 1.09004 * 110.70896 * 258.98105 * 20 18 17 39 39 H 1.09003 * 110.71056 * 22.21091 * 20 18 17 40 40 H 1.09007 * 110.07961 * 359.06034 * 23 22 21 41 41 H 1.08990 * 110.07971 * 120.55540 * 23 22 21 42 42 H 1.08997 * 110.48933 * 95.17865 * 24 23 22 43 43 H 1.08998 * 110.48144 * 217.81647 * 24 23 22 44 44 H 1.08999 * 110.70254 * 279.20970 * 25 24 23 45 45 H 1.08996 * 110.90590 * 155.96989 * 25 24 23 46 46 H 1.08996 * 110.51218 * 262.34093 * 26 22 21 47 47 H 1.08995 * 110.51436 * 24.92048 * 26 22 21 48 48 H 1.08993 * 110.36637 * 94.47881 * 28 13 12 49 49 H 1.09001 * 110.36582 * 216.80541 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3909 2.1076 -1.3947 5 1 1.5033 2.6199 0.8032 6 1 3.5955 1.4121 0.5918 7 6 2.0045 -1.1939 -0.0005 8 1 3.0815 -1.1958 0.0798 9 6 1.2552 -2.4966 -0.1132 10 8 0.3616 -2.6674 0.9888 11 6 2.2354 -3.6942 -0.2251 12 6 1.4060 -4.7497 -0.9864 13 7 0.3486 -4.0324 -1.7137 14 6 -0.5996 -4.6015 -2.4841 15 8 -1.4277 -3.9072 -3.0412 16 7 -0.6299 -5.9403 -2.6368 17 6 -1.6609 -6.5589 -3.4738 18 6 -1.4716 -8.0772 -3.4776 19 1 -1.5640 -8.4720 -2.4658 20 6 -2.5046 -8.7444 -4.4128 21 8 -1.7353 -9.7924 -5.0540 22 6 -0.4362 -9.1985 -5.2068 23 6 -0.3888 -8.3231 -6.4639 24 6 0.7163 -8.9147 -7.3661 25 6 1.6382 -9.6815 -6.3834 26 6 0.6336 -10.2891 -5.3709 27 8 -0.1873 -8.4197 -4.0330 28 6 0.5011 -2.5872 -1.4659 29 1 -0.4850 0.8401 -0.0004 30 1 -0.2700 -1.9435 1.0989 31 1 2.5114 -4.0603 0.7638 32 1 3.1215 -3.4153 -0.7954 33 1 0.9605 -5.4507 -0.2805 34 1 2.0433 -5.2844 -1.6908 35 1 0.0306 -6.4943 -2.1920 36 1 -1.5781 -6.1795 -4.4922 37 1 -2.6461 -6.3170 -3.0749 38 1 -3.3283 -9.1677 -3.8378 39 1 -2.8743 -8.0315 -5.1499 40 1 -1.3491 -8.3552 -6.9787 41 1 -0.1427 -7.2959 -6.1955 42 1 0.2861 -9.5985 -8.0977 43 1 1.2680 -8.1182 -7.8654 44 1 2.3233 -8.9966 -5.8838 45 1 2.1888 -10.4677 -6.8999 46 1 1.1247 -10.4887 -4.4186 47 1 0.1907 -11.2017 -5.7698 48 1 1.0867 -2.1257 -2.2609 49 1 -0.4760 -2.1106 -1.3876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826845420.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:59 Heat of formation + Delta-G solvation = -170.729569 kcal Electronic energy + Delta-G solvation = -30994.087094 eV Core-core repulsion = 26727.888351 eV Total energy + Delta-G solvation = -4266.198743 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29315 -39.56604 -37.46883 -36.82077 -35.54771 -34.22813 -34.14229 -32.17407 -31.06227 -29.85483 -29.14376 -27.81762 -27.17756 -25.86763 -24.56709 -22.58775 -22.08883 -21.08907 -20.76870 -19.62833 -19.40517 -17.71381 -17.60172 -17.06876 -16.80662 -16.09697 -15.97129 -15.41096 -15.11763 -15.00036 -14.80512 -14.49257 -14.28077 -13.88141 -13.69723 -13.38165 -13.10102 -12.95604 -12.87454 -12.76675 -12.56969 -12.16978 -12.06066 -11.84069 -11.63278 -11.56740 -11.49515 -11.46357 -11.40111 -11.05107 -10.97419 -10.77297 -10.57392 -10.48974 -10.48282 -10.16581 -9.90014 -9.62270 -9.35713 -8.84053 -8.66840 -8.33733 -7.65208 -6.27639 -4.36754 2.98858 3.20893 3.25246 3.29408 3.32036 3.55837 3.76970 4.09792 4.18079 4.19645 4.27686 4.43124 4.59506 4.60343 4.67734 4.97240 5.00369 5.03309 5.08920 5.14943 5.22025 5.30641 5.38302 5.44228 5.46769 5.54839 5.64223 5.65222 5.69052 5.73977 5.76506 5.82290 5.89184 5.99044 6.05696 6.13351 6.53963 6.70683 6.73269 6.82328 6.90040 6.98469 7.25080 7.36553 7.66099 7.75738 8.03335 8.55525 8.68023 9.14694 9.32076 9.46164 10.79603 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002403 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.108707 B =11650.619790 C =11954.136294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.584 6.584 11 C -0.116 4.116 12 C 0.106 3.894 13 N -0.626 5.626 14 C 0.717 3.283 15 O -0.600 6.600 16 N -0.745 5.745 17 C 0.136 3.864 18 C 0.038 3.962 19 H 0.102 0.898 20 C 0.023 3.977 21 O -0.366 6.366 22 C 0.250 3.750 23 C -0.160 4.160 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.114 4.114 27 O -0.361 6.361 28 C 0.113 3.887 29 H 0.271 0.729 30 H 0.385 0.615 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.397 0.603 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.056 0.944 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.796 -20.201 -10.565 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.154 4.154 12 C -0.018 4.018 13 N -0.363 5.363 14 C 0.419 3.581 15 O -0.479 6.479 16 N -0.403 5.403 17 C 0.011 3.989 18 C -0.020 4.020 19 H 0.120 0.880 20 C -0.054 4.054 21 O -0.286 6.286 22 C 0.173 3.827 23 C -0.198 4.198 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.152 4.152 27 O -0.281 6.281 28 C -0.009 4.009 29 H 0.081 0.919 30 H 0.236 0.764 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.231 0.769 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.130 0.870 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.155 -20.294 -10.940 23.084 hybrid contribution 0.181 1.345 0.061 1.359 sum -0.975 -18.949 -10.879 21.871 Atomic orbital electron populations 1.69642 1.06020 1.27937 1.49490 1.25088 0.95021 0.99778 0.93383 0.86393 0.79850 0.82523 0.78165 1.20443 1.21010 1.19669 1.21483 0.94019 0.90151 1.52036 0.91469 1.19658 0.85774 0.91470 0.82332 1.86071 1.51162 1.50750 1.51390 1.22597 0.97862 0.95486 0.99458 1.21924 0.89523 0.95783 0.94532 1.47873 1.29480 1.09953 1.48967 1.15487 0.81485 0.81327 0.79820 1.90879 1.41645 1.61959 1.53435 1.44898 1.34979 1.05816 1.54588 1.21387 0.92229 0.89308 0.96017 1.23911 0.83506 0.95318 0.99299 0.88004 1.24228 0.95391 0.90482 0.95301 1.89410 1.22132 1.36943 1.80081 1.23895 0.83861 0.88543 0.86411 1.22937 1.00642 1.00546 0.95655 1.22323 0.96232 0.99765 0.97437 1.22523 0.97289 0.99756 0.96516 1.22355 0.94850 0.96861 1.01113 1.88939 1.26891 1.71337 1.40979 1.23149 1.02436 0.76175 0.99134 0.91936 0.76428 0.90798 0.90453 0.92691 0.93097 0.76871 0.91380 0.90404 0.87030 0.90118 0.90245 0.89730 0.91270 0.91000 0.90709 0.90800 0.89700 0.89405 0.92542 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.89 10.71 55.43 0.59 -23.29 16 2 C 0.07 1.84 5.26 -17.82 -0.09 1.75 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.99 8.26 -34.44 -0.28 -14.27 16 8 H 0.07 1.71 7.79 -52.49 -0.41 1.30 16 9 C 0.25 6.04 0.89 -89.50 -0.08 5.96 16 10 O -0.58 -15.04 13.20 -35.23 -0.47 -15.50 16 11 C -0.12 -2.31 6.12 -24.89 -0.15 -2.46 16 12 C 0.11 1.89 6.15 -3.06 -0.02 1.87 16 13 N -0.63 -13.25 3.32 -176.10 -0.59 -13.83 16 14 C 0.72 14.87 8.49 -86.92 -0.74 14.13 16 15 O -0.60 -14.66 16.60 5.29 0.09 -14.57 16 16 N -0.75 -11.58 5.44 -65.23 -0.35 -11.94 16 17 C 0.14 1.71 5.29 -4.04 -0.02 1.69 16 18 C 0.04 0.37 3.82 -25.94 -0.10 0.27 16 19 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 20 C 0.02 0.19 7.03 37.94 0.27 0.46 16 21 O -0.37 -3.77 11.12 -59.26 -0.66 -4.43 16 22 C 0.25 2.53 1.40 -26.26 -0.04 2.49 16 23 C -0.16 -1.50 6.02 -25.84 -0.16 -1.65 16 24 C -0.12 -0.93 6.85 -24.90 -0.17 -1.10 16 25 C -0.12 -0.94 6.91 -24.58 -0.17 -1.11 16 26 C -0.11 -0.98 6.33 -25.32 -0.16 -1.14 16 27 O -0.36 -4.13 10.38 -59.26 -0.62 -4.75 16 28 C 0.11 2.77 5.52 -2.41 -0.01 2.75 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.38 10.25 7.18 45.56 0.33 10.58 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.40 5.51 7.40 -40.82 -0.30 5.21 16 36 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.61 7.80 -51.93 -0.41 0.21 16 40 H 0.08 0.70 7.94 -51.92 -0.41 0.29 16 41 H 0.08 0.91 7.98 -51.93 -0.41 0.49 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.73 8.07 -51.93 -0.42 0.32 16 47 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 48 H 0.06 1.42 8.04 -51.93 -0.42 1.00 16 49 H 0.08 2.27 7.50 -51.93 -0.39 1.88 16 LS Contribution 389.65 15.07 5.87 5.87 Total: -1.00 -31.30 389.65 -10.54 -41.84 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -7.46 Total: 15.66 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.93 Total: 9.63 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: -0.35 Total: -49.06 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -1.65 Total: -39.25 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.30 -10.54 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826845420.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.891 kcal (2) G-P(sol) polarization free energy of solvation -31.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds