Wall clock time and date at job start Sat Apr 11 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99937 * 2 1 4 4 H 1.48499 * 109.47029 * 264.83142 * 3 2 1 5 5 H 1.48494 * 109.47163 * 24.83091 * 3 2 1 6 6 H 1.48499 * 109.47052 * 144.83387 * 3 2 1 7 7 C 1.37884 * 120.00171 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99863 * 3.40149 * 7 2 1 9 9 C 1.50698 * 119.99894 * 183.40924 * 7 2 1 10 10 O 1.42902 * 110.78372 * 61.81880 * 9 7 2 11 11 C 1.55158 * 110.71834 * 298.57539 * 9 7 2 12 12 C 1.55128 * 101.48445 * 205.97381 * 11 9 7 13 13 N 1.47417 * 104.72598 * 37.29402 * 12 11 9 14 14 C 1.34774 * 125.65055 * 155.81423 * 13 12 11 15 15 O 1.21587 * 120.00215 * 179.69214 * 14 13 12 16 16 N 1.34776 * 120.00096 * 359.69792 * 14 13 12 17 17 C 1.46496 * 120.00168 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47204 * 179.97438 * 17 16 14 19 19 H 1.09004 * 110.28792 * 305.70718 * 18 17 16 20 20 C 1.54502 * 110.32368 * 183.57998 * 18 17 16 21 21 O 1.45123 * 102.92701 * 219.47344 * 20 18 17 22 22 C 1.43658 * 103.24779 * 35.61867 * 21 20 18 23 23 C 1.53650 * 110.31913 * 82.45091 * 22 21 20 24 24 C 1.55033 * 104.04683 * 97.24068 * 23 22 21 25 25 C 1.54943 * 102.82421 * 37.41485 * 24 23 22 26 26 C 1.53256 * 110.55510 * 200.89563 * 22 21 20 27 27 O 1.43049 * 107.15959 * 321.88598 * 22 21 20 28 28 C 1.47023 * 108.70296 * 335.55625 * 13 12 11 29 29 H 0.97000 * 119.99941 * 0.02562 * 1 2 3 30 30 H 0.96695 * 114.00220 * 61.78009 * 10 9 7 31 31 H 1.08997 * 111.00644 * 324.20903 * 11 9 7 32 32 H 1.09001 * 111.00290 * 88.03045 * 11 9 7 33 33 H 1.09005 * 110.49734 * 278.45461 * 12 11 9 34 34 H 1.09002 * 110.34313 * 156.06178 * 12 11 9 35 35 H 0.96999 * 120.00026 * 0.27583 * 16 14 13 36 36 H 1.08997 * 109.47615 * 299.99939 * 17 16 14 37 37 H 1.09006 * 109.47340 * 60.00547 * 17 16 14 38 38 H 1.08992 * 110.70943 * 337.79234 * 20 18 17 39 39 H 1.09008 * 110.70696 * 101.03090 * 20 18 17 40 40 H 1.09003 * 110.51151 * 215.87768 * 23 22 21 41 41 H 1.08994 * 110.51812 * 338.59479 * 23 22 21 42 42 H 1.09001 * 110.74088 * 279.07762 * 24 23 22 43 43 H 1.09001 * 110.89358 * 155.81910 * 24 23 22 44 44 H 1.09003 * 110.48379 * 203.71682 * 25 24 23 45 45 H 1.09000 * 110.59717 * 81.14473 * 25 24 23 46 46 H 1.09002 * 110.07878 * 358.74785 * 26 22 21 47 47 H 1.08998 * 110.08025 * 120.29808 * 26 22 21 48 48 H 1.08997 * 109.88613 * 120.69963 * 28 13 12 49 49 H 1.08999 * 109.88627 * 241.71150 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6059 1.9834 -1.3944 5 1 1.3963 2.6817 0.5879 6 1 3.4878 1.4742 0.8064 7 6 2.0046 -1.1941 0.0005 8 1 1.4661 -2.1285 -0.0545 9 6 3.5096 -1.1951 0.0781 10 8 3.9548 -0.5993 1.2983 11 6 4.1228 -0.4643 -1.1455 12 6 5.5167 -1.1385 -1.2412 13 7 5.2753 -2.5498 -0.8902 14 6 6.0424 -3.5938 -1.2615 15 8 5.7495 -4.7196 -0.9078 16 7 7.1343 -3.3900 -2.0248 17 6 7.9685 -4.5248 -2.4280 18 6 9.1337 -4.0229 -3.2830 19 1 8.7611 -3.4351 -4.1220 20 6 9.9761 -5.2131 -3.7938 21 8 11.3362 -4.7190 -3.6841 22 6 11.2987 -3.9129 -2.4955 23 6 11.4525 -4.7955 -1.2472 24 6 12.9592 -4.6924 -0.8968 25 6 13.2875 -3.2134 -1.2217 26 6 12.4579 -2.9104 -2.4885 27 8 10.0383 -3.2365 -2.4839 28 6 4.0625 -2.6290 -0.0629 29 1 -0.4850 0.8401 -0.0004 30 1 3.6622 -1.0654 2.0934 31 1 3.5345 -0.6467 -2.0447 32 1 4.2194 0.6044 -0.9542 33 1 6.2097 -0.6846 -0.5326 34 1 5.9061 -1.0612 -2.2563 35 1 7.3703 -2.4914 -2.3037 36 1 8.3573 -5.0235 -1.5402 37 1 7.3700 -5.2282 -3.0071 38 1 9.8318 -6.0878 -3.1597 39 1 9.7301 -5.4427 -4.8307 40 1 10.8431 -4.4104 -0.4297 41 1 11.1826 -5.8271 -1.4731 42 1 13.5476 -5.3647 -1.5213 43 1 13.1280 -4.9023 0.1594 44 1 14.3517 -3.0947 -1.4252 45 1 12.9823 -2.5638 -0.4013 46 1 13.0726 -3.0428 -3.3789 47 1 12.0716 -1.8920 -2.4481 48 1 3.3230 -3.2653 -0.5489 49 1 4.3095 -3.0318 0.9194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826845421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:01 Heat of formation + Delta-G solvation = -183.013440 kcal Electronic energy + Delta-G solvation = -30862.279817 eV Core-core repulsion = 26595.548406 eV Total energy + Delta-G solvation = -4266.731411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.07349 -41.30693 -39.39194 -37.65594 -36.37411 -36.16968 -35.46761 -34.50793 -32.34153 -31.36148 -29.99782 -29.80385 -28.06787 -27.29422 -26.00252 -24.09336 -23.03994 -21.81089 -21.69035 -21.43118 -21.01049 -19.66022 -19.01608 -18.42375 -17.60385 -17.51419 -16.96387 -16.83596 -16.72511 -16.47799 -16.09080 -15.85880 -15.40486 -15.06866 -15.02848 -14.91860 -14.70447 -14.23331 -14.06399 -14.02050 -13.90681 -13.61843 -13.59658 -13.22907 -13.12433 -12.97037 -12.84027 -12.54213 -12.41625 -12.36160 -12.15926 -12.14163 -12.05750 -11.83931 -11.55375 -11.33641 -11.24893 -10.96069 -10.79341 -10.64772 -10.37210 -10.30666 -9.50402 -8.35600 -6.51587 1.38644 1.47735 1.52578 1.69667 2.06535 2.40719 2.42905 2.81196 2.93629 3.00179 3.42922 3.47844 3.53202 3.56409 3.66298 3.77010 3.85184 4.02332 4.04038 4.23077 4.25666 4.35668 4.38170 4.42022 4.48083 4.49188 4.53167 4.58092 4.67305 4.73328 4.79082 4.85806 4.90995 4.93483 4.94111 5.02369 5.06132 5.07778 5.12552 5.22862 5.37390 5.39293 5.43539 5.51576 6.01739 6.05926 6.07580 6.59384 6.92800 7.11932 7.29668 7.47303 8.78625 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021241 B = 0.002407 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.892471 B =11627.611836 C =12060.242235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.035 3.965 3 Si 0.940 3.060 4 H -0.265 1.265 5 H -0.309 1.309 6 H -0.213 1.213 7 C -0.552 4.552 8 H 0.035 0.965 9 C 0.218 3.782 10 O -0.572 6.572 11 C -0.128 4.128 12 C 0.111 3.889 13 N -0.631 5.631 14 C 0.716 3.284 15 O -0.638 6.638 16 N -0.726 5.726 17 C 0.134 3.866 18 C 0.043 3.957 19 H 0.118 0.882 20 C 0.022 3.978 21 O -0.375 6.375 22 C 0.243 3.757 23 C -0.159 4.159 24 C -0.119 4.119 25 C -0.121 4.121 26 C -0.118 4.118 27 O -0.379 6.379 28 C 0.123 3.877 29 H 0.268 0.732 30 H 0.376 0.624 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.409 0.591 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.137 0.863 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.046 0.954 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.816 -5.670 -7.964 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.191 1.191 5 H -0.238 1.238 6 H -0.135 1.135 7 C -0.589 4.589 8 H 0.053 0.947 9 C 0.177 3.823 10 O -0.379 6.379 11 C -0.165 4.165 12 C -0.011 4.011 13 N -0.367 5.367 14 C 0.418 3.582 15 O -0.520 6.520 16 N -0.383 5.383 17 C 0.010 3.990 18 C -0.015 4.015 19 H 0.136 0.864 20 C -0.055 4.055 21 O -0.296 6.296 22 C 0.166 3.834 23 C -0.198 4.198 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.156 4.156 27 O -0.301 6.301 28 C -0.001 4.001 29 H 0.077 0.923 30 H 0.225 0.775 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.118 0.882 35 H 0.246 0.754 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.155 0.845 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.103 0.897 48 H 0.064 0.936 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 28.958 -5.904 -8.190 30.668 hybrid contribution -1.170 0.311 0.484 1.304 sum 27.788 -5.594 -7.706 29.374 Atomic orbital electron populations 1.70068 1.08597 1.28561 1.50312 1.25805 0.95171 1.03376 0.92129 0.86077 0.80586 0.77169 0.79686 1.19090 1.23781 1.13500 1.21408 0.90831 0.93460 1.53239 0.94654 1.19802 0.90921 0.87718 0.83867 1.86441 1.78261 1.57066 1.16166 1.23061 0.95510 0.99845 0.98127 1.22426 0.97274 0.79697 1.01699 1.47599 1.27587 1.06855 1.54692 1.15573 0.80273 0.83033 0.79313 1.90861 1.74921 1.23169 1.63049 1.44819 1.26195 1.11821 1.55475 1.21572 0.90402 0.88222 0.98810 1.23906 0.90068 0.93763 0.93755 0.86406 1.24428 0.79683 0.95826 1.05522 1.89428 1.28926 1.66207 1.44992 1.24073 0.85813 0.87736 0.85743 1.23106 0.99223 1.00143 0.97280 1.22459 0.93800 0.97045 1.02294 1.22388 1.00536 0.96394 0.96502 1.22182 0.94557 0.98359 1.00471 1.88938 1.21259 1.48306 1.71563 1.22325 0.84803 0.99163 0.93799 0.92287 0.77506 0.90030 0.90165 0.90205 0.88209 0.75411 0.92247 0.89595 0.89469 0.84485 0.90737 0.90431 0.90585 0.90126 0.89414 0.91067 0.89277 0.89738 0.93582 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 13.96 21.45 0.30 -56.45 16 2 C 0.04 1.97 5.47 84.66 0.46 2.44 16 3 Si 0.94 42.55 23.89 68.60 1.64 44.19 16 4 H -0.27 -11.19 7.08 99.48 0.70 -10.49 16 5 H -0.31 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.21 -9.05 5.50 99.48 0.55 -8.51 16 7 C -0.55 -29.95 8.81 25.60 0.23 -29.72 16 8 H 0.04 2.17 7.82 -2.91 -0.02 2.14 16 9 C 0.22 9.49 0.67 -10.35 -0.01 9.48 16 10 O -0.57 -23.53 10.45 -148.98 -1.56 -25.09 16 11 C -0.13 -4.79 4.83 32.06 0.15 -4.64 16 12 C 0.11 3.31 6.58 86.93 0.57 3.88 16 13 N -0.63 -22.53 3.32 -829.33 -2.76 -25.29 16 14 C 0.72 25.22 8.49 179.06 1.52 26.74 16 15 O -0.64 -27.49 16.67 -3.99 -0.07 -27.56 16 16 N -0.73 -18.22 5.51 -478.55 -2.64 -20.86 16 17 C 0.13 2.72 5.27 86.38 0.45 3.18 16 18 C 0.04 0.65 3.78 31.10 0.12 0.77 16 19 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 20 C 0.02 0.27 6.98 72.49 0.51 0.78 16 21 O -0.38 -6.39 11.13 -126.01 -1.40 -7.80 16 22 C 0.24 4.15 1.41 30.90 0.04 4.19 16 23 C -0.16 -2.53 6.09 31.51 0.19 -2.34 16 24 C -0.12 -1.45 6.91 31.95 0.22 -1.23 16 25 C -0.12 -1.40 6.84 31.74 0.22 -1.18 16 26 C -0.12 -1.71 6.46 31.17 0.20 -1.50 16 27 O -0.38 -7.32 10.54 -126.01 -1.33 -8.65 16 28 C 0.12 5.16 6.21 86.73 0.54 5.70 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.38 13.73 9.08 -74.06 -0.67 13.06 16 31 H 0.08 3.17 8.04 -2.39 -0.02 3.15 16 32 H 0.08 2.95 5.00 -2.39 -0.01 2.94 16 33 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 34 H 0.10 2.22 7.29 -2.39 -0.02 2.21 16 35 H 0.41 8.51 6.95 -92.71 -0.64 7.86 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.09 0.96 7.23 -2.39 -0.02 0.95 16 39 H 0.14 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 41 H 0.08 1.18 7.23 -2.39 -0.02 1.16 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.09 1.21 7.97 -2.39 -0.02 1.19 16 47 H 0.08 1.26 7.98 -2.39 -0.02 1.24 16 48 H 0.05 2.14 7.66 -2.39 -0.02 2.13 16 49 H 0.06 2.29 8.06 -2.39 -0.02 2.28 16 Total: -1.00 -73.79 379.93 -2.89 -76.68 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.50 Total: 34.28 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.42 Total: 16.54 kcal Atomic # 7 Polarization: -97.51 SS G_CDS: -5.09 Total: -102.60 kcal Atomic # 8 Polarization: -64.73 SS G_CDS: -4.35 Total: -69.09 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.64 Total: 44.19 kcal Total: -73.79 -2.89 -76.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826845421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.329 kcal (2) G-P(sol) polarization free energy of solvation -73.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds