Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48504 * 109.46858 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.47016 * 29.99823 * 3 2 1 6 6 H 1.48496 * 109.47107 * 149.99878 * 3 2 1 7 7 C 1.37882 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99751 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.64456 * 56.85786 * 9 7 2 11 11 C 1.55164 * 110.71977 * 179.97438 * 9 7 2 12 12 C 1.54910 * 101.58108 * 153.86588 * 11 9 7 13 13 N 1.47424 * 104.83269 * 322.98659 * 12 11 9 14 14 C 1.34775 * 125.65091 * 204.09012 * 13 12 11 15 15 O 1.21583 * 120.00144 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99585 * 0.02789 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.53004 * 109.47198 * 180.27868 * 17 16 14 19 19 H 1.08991 * 110.62823 * 308.11434 * 18 17 16 20 20 C 1.54501 * 110.70933 * 184.99972 * 18 17 16 21 21 O 1.44065 * 105.07371 * 219.92220 * 20 18 17 22 22 C 1.43046 * 106.89256 * 358.98151 * 21 20 18 23 23 C 1.53656 * 110.68071 * 263.76954 * 22 21 20 24 24 C 1.55028 * 104.04722 * 215.64138 * 23 22 21 25 25 C 1.54943 * 102.82569 * 37.42253 * 24 23 22 26 26 C 1.53254 * 110.93446 * 144.86067 * 22 21 20 27 27 O 1.43654 * 107.16510 * 24.09573 * 22 21 20 28 28 C 1.47025 * 108.70103 * 24.35987 * 13 12 11 29 29 H 0.96994 * 119.99614 * 0.02562 * 1 2 3 30 30 H 0.96697 * 113.99754 * 303.14215 * 10 9 7 31 31 H 1.08998 * 110.99993 * 35.78820 * 11 9 7 32 32 H 1.09002 * 111.00085 * 271.94095 * 11 9 7 33 33 H 1.09005 * 110.36258 * 204.15204 * 12 11 9 34 34 H 1.08994 * 110.46074 * 81.87901 * 12 11 9 35 35 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 36 36 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 37 37 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 38 38 H 1.08999 * 110.32237 * 338.81991 * 20 18 17 39 39 H 1.08997 * 110.32218 * 101.02740 * 20 18 17 40 40 H 1.09004 * 110.51425 * 334.28183 * 23 22 21 41 41 H 1.08999 * 110.51466 * 96.99717 * 23 22 21 42 42 H 1.09001 * 110.74459 * 279.08775 * 24 23 22 43 43 H 1.09007 * 110.74235 * 155.75629 * 24 23 22 44 44 H 1.08994 * 110.48366 * 203.72701 * 25 24 23 45 45 H 1.09001 * 110.59264 * 81.13827 * 25 24 23 46 46 H 1.08997 * 110.07908 * 240.04280 * 26 22 21 47 47 H 1.09005 * 110.07786 * 1.59365 * 26 22 21 48 48 H 1.09005 * 109.88035 * 118.12934 * 28 13 12 49 49 H 1.08997 * 109.88463 * 239.28895 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3664 -2.5701 -1.1195 11 6 2.2333 -3.7003 0.0005 12 6 1.3755 -4.8035 0.6690 13 7 0.5946 -4.0999 1.7027 14 6 0.0722 -4.6618 2.8107 15 8 -0.5575 -3.9821 3.5980 16 7 0.2479 -5.9772 3.0462 17 6 -0.3147 -6.5867 4.2537 18 6 0.0323 -8.0766 4.2821 19 1 -0.2503 -8.5546 3.3443 20 6 -0.6519 -8.7742 5.4789 21 8 0.3314 -9.6963 5.9871 22 6 1.4857 -9.5756 5.1511 23 6 1.4824 -10.6592 4.0616 24 6 2.9790 -11.0261 3.8913 25 6 3.5180 -10.9544 5.3422 26 6 2.7722 -9.7538 5.9647 27 8 1.4429 -8.2692 4.5551 28 6 0.4745 -2.6851 1.3213 29 1 -0.4849 0.8400 -0.0004 30 1 -0.2681 -1.8419 -1.1662 31 1 3.1195 -3.4801 0.5956 32 1 2.5073 -3.9808 -1.0165 33 1 2.0165 -5.5578 1.1256 34 1 0.7103 -5.2638 -0.0614 35 1 0.7506 -6.5194 2.4183 36 1 0.1027 -6.0996 5.1350 37 1 -1.3980 -6.4660 4.2507 38 1 -0.9157 -8.0430 6.2430 39 1 -1.5394 -9.3125 5.1464 40 1 0.9110 -11.5279 4.3886 41 1 1.0778 -10.2632 3.1302 42 1 3.4847 -10.2996 3.2553 43 1 3.0862 -12.0336 3.4891 44 1 4.5933 -10.7765 5.3412 45 1 3.2843 -11.8710 5.8838 46 1 3.3858 -8.8556 5.8960 47 1 2.5299 -9.9634 7.0067 48 1 -0.5748 -2.4281 1.1760 49 1 0.9089 -2.0540 2.0966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000826845422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = -169.722109 kcal Electronic energy + Delta-G solvation = -30746.462617 eV Core-core repulsion = 26480.307561 eV Total energy + Delta-G solvation = -4266.155056 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.29057 -39.63209 -37.53365 -36.87477 -35.56640 -34.30335 -34.23887 -32.15419 -31.08235 -29.83710 -29.22550 -27.86435 -27.18555 -25.89124 -24.57334 -22.64409 -22.25872 -21.02678 -20.73518 -19.69617 -19.42346 -17.70876 -17.67539 -17.11973 -16.79222 -16.19291 -16.01304 -15.45069 -15.23547 -15.10538 -14.87883 -14.39219 -14.30265 -13.87470 -13.71838 -13.44930 -13.07480 -13.02495 -12.86988 -12.80230 -12.43813 -12.32530 -12.08366 -11.89886 -11.67775 -11.59171 -11.55177 -11.49252 -11.42414 -11.05252 -10.98923 -10.81270 -10.64435 -10.52778 -10.48353 -10.15964 -9.93007 -9.65560 -9.33866 -8.90888 -8.66005 -8.31297 -7.77134 -6.28526 -4.36850 2.97937 3.14608 3.22273 3.29483 3.32340 3.51162 3.71984 4.04372 4.13201 4.18372 4.27909 4.37997 4.51495 4.61244 4.62594 4.87861 4.99180 5.02107 5.02973 5.14015 5.21353 5.28255 5.34651 5.38902 5.45218 5.48629 5.59056 5.62064 5.65730 5.69497 5.74313 5.81500 5.87926 5.93963 6.02698 6.10187 6.51027 6.65854 6.72787 6.77091 6.88439 6.98311 7.25136 7.32912 7.60764 7.74688 8.02356 8.50306 8.66580 9.09404 9.31875 9.44350 10.79372 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002320 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.644553 B =12064.415456 C =12504.138792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.587 6.587 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.628 5.628 14 C 0.717 3.283 15 O -0.597 6.597 16 N -0.749 5.749 17 C 0.150 3.850 18 C 0.032 3.968 19 H 0.091 0.909 20 C 0.029 3.971 21 O -0.373 6.373 22 C 0.249 3.751 23 C -0.157 4.157 24 C -0.121 4.121 25 C -0.123 4.123 26 C -0.118 4.118 27 O -0.353 6.353 28 C 0.120 3.880 29 H 0.271 0.729 30 H 0.386 0.614 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.396 0.604 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 -22.488 8.008 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.397 6.397 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.477 6.477 16 N -0.407 5.407 17 C 0.025 3.975 18 C -0.026 4.026 19 H 0.109 0.891 20 C -0.048 4.048 21 O -0.294 6.294 22 C 0.172 3.828 23 C -0.195 4.195 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.156 4.156 27 O -0.273 6.273 28 C -0.002 4.002 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.230 0.770 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.080 0.920 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.310 -22.389 8.680 24.124 hybrid contribution 0.084 1.149 -0.281 1.186 sum 2.394 -21.239 8.399 22.965 Atomic orbital electron populations 1.69577 1.06017 1.27977 1.49931 1.25082 0.95061 0.99811 0.93363 0.86383 0.79801 0.82369 0.78248 1.20385 1.20981 1.19701 1.21522 0.93703 0.90105 1.52149 0.91497 1.19486 0.85878 0.92064 0.81777 1.86067 1.51464 1.53436 1.48710 1.22730 0.97675 0.94871 1.00126 1.22239 0.93857 0.95627 0.90284 1.47926 1.55330 1.12326 1.20935 1.15463 0.80053 0.81171 0.81467 1.90886 1.46869 1.61926 1.47972 1.44978 1.61054 1.08675 1.25982 1.21081 0.99088 0.88455 0.88849 1.24138 0.81883 0.97520 0.99021 0.89130 1.23935 0.92368 0.92681 0.95842 1.88872 1.25012 1.61247 1.54309 1.23883 0.87940 0.83600 0.87337 1.23100 0.98539 0.99081 0.98769 1.22456 0.94476 1.01915 0.97023 1.22372 1.00021 0.97797 0.95840 1.22155 0.93591 1.00049 0.99757 1.89517 1.23497 1.34146 1.80188 1.22914 1.01413 0.76723 0.99146 0.91901 0.76186 0.90552 0.90559 0.92602 0.92036 0.77015 0.90559 0.89938 0.89163 0.89301 0.89681 0.90495 0.90741 0.90950 0.90835 0.91150 0.89350 0.89528 0.92007 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.92 10.97 55.43 0.61 -23.31 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -14.03 8.11 -34.44 -0.28 -14.31 16 8 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 9 C 0.25 6.02 0.86 -89.93 -0.08 5.95 16 10 O -0.59 -14.81 13.08 -35.23 -0.46 -15.27 16 11 C -0.12 -2.30 6.23 -24.58 -0.15 -2.46 16 12 C 0.10 1.81 6.57 -2.53 -0.02 1.79 16 13 N -0.63 -13.12 3.33 -176.23 -0.59 -13.71 16 14 C 0.72 14.60 8.49 -86.92 -0.74 13.86 16 15 O -0.60 -14.44 16.67 5.29 0.09 -14.35 16 16 N -0.75 -11.27 5.52 -65.22 -0.36 -11.63 16 17 C 0.15 1.86 5.30 -4.04 -0.02 1.84 16 18 C 0.03 0.31 3.06 -25.94 -0.08 0.23 16 19 H 0.09 0.75 7.51 -51.93 -0.39 0.36 16 20 C 0.03 0.25 7.67 37.95 0.29 0.54 16 21 O -0.37 -3.90 10.86 -59.26 -0.64 -4.54 16 22 C 0.25 2.44 1.41 -26.26 -0.04 2.41 16 23 C -0.16 -1.25 6.08 -25.32 -0.15 -1.40 16 24 C -0.12 -0.84 6.91 -24.63 -0.17 -1.01 16 25 C -0.12 -0.83 6.84 -24.95 -0.17 -1.00 16 26 C -0.12 -1.03 6.46 -25.85 -0.17 -1.19 16 27 O -0.35 -4.05 10.84 -59.26 -0.64 -4.69 16 28 C 0.12 2.95 5.54 -3.06 -0.02 2.93 16 29 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 30 H 0.39 10.08 6.98 45.56 0.32 10.39 16 31 H 0.08 1.47 8.02 -51.93 -0.42 1.05 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 33 H 0.06 0.80 7.30 -51.93 -0.38 0.42 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 5.15 6.95 -40.82 -0.28 4.87 16 36 H 0.08 1.06 8.14 -51.92 -0.42 0.63 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 0.73 7.85 -51.93 -0.41 0.32 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 41 H 0.08 0.60 7.22 -51.93 -0.38 0.22 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 47 H 0.09 0.73 7.98 -51.93 -0.41 0.32 16 48 H 0.06 1.66 8.07 -51.93 -0.42 1.24 16 49 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -31.36 388.04 -10.41 -41.77 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -7.35 Total: 14.49 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -1.88 Total: 9.91 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.34 Total: -48.65 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.66 Total: -38.85 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.36 -10.41 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826845422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.950 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds