Wall clock time and date at job start Sat Apr 11 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00285 * 2 1 4 4 H 1.48504 * 109.46858 * 269.99820 * 3 2 1 5 5 H 1.48500 * 109.47016 * 29.99823 * 3 2 1 6 6 H 1.48496 * 109.47107 * 149.99878 * 3 2 1 7 7 C 1.37882 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99751 * 0.02562 * 7 2 1 10 10 O 1.42899 * 110.64456 * 56.85786 * 9 7 2 11 11 C 1.55164 * 110.71977 * 179.97438 * 9 7 2 12 12 C 1.54910 * 101.58108 * 153.86588 * 11 9 7 13 13 N 1.47424 * 104.83269 * 322.98659 * 12 11 9 14 14 C 1.34775 * 125.65091 * 204.09012 * 13 12 11 15 15 O 1.21583 * 120.00144 * 180.02562 * 14 13 12 16 16 N 1.34777 * 119.99585 * 0.02789 * 14 13 12 17 17 C 1.46499 * 119.99665 * 179.72218 * 16 14 13 18 18 C 1.53004 * 109.47198 * 180.27868 * 17 16 14 19 19 H 1.08991 * 110.62823 * 308.11434 * 18 17 16 20 20 C 1.54501 * 110.70933 * 184.99972 * 18 17 16 21 21 O 1.44065 * 105.07371 * 219.92220 * 20 18 17 22 22 C 1.43046 * 106.89256 * 358.98151 * 21 20 18 23 23 C 1.53656 * 110.68071 * 263.76954 * 22 21 20 24 24 C 1.55028 * 104.04722 * 215.64138 * 23 22 21 25 25 C 1.54943 * 102.82569 * 37.42253 * 24 23 22 26 26 C 1.53254 * 110.93446 * 144.86067 * 22 21 20 27 27 O 1.43654 * 107.16510 * 24.09573 * 22 21 20 28 28 C 1.47025 * 108.70103 * 24.35987 * 13 12 11 29 29 H 0.96994 * 119.99614 * 0.02562 * 1 2 3 30 30 H 0.96697 * 113.99754 * 303.14215 * 10 9 7 31 31 H 1.08998 * 110.99993 * 35.78820 * 11 9 7 32 32 H 1.09002 * 111.00085 * 271.94095 * 11 9 7 33 33 H 1.09005 * 110.36258 * 204.15204 * 12 11 9 34 34 H 1.08994 * 110.46074 * 81.87901 * 12 11 9 35 35 H 0.97001 * 120.00485 * 0.02562 * 16 14 13 36 36 H 1.09009 * 109.47454 * 300.27637 * 17 16 14 37 37 H 1.08998 * 109.47492 * 60.27932 * 17 16 14 38 38 H 1.08999 * 110.32237 * 338.81991 * 20 18 17 39 39 H 1.08997 * 110.32218 * 101.02740 * 20 18 17 40 40 H 1.09004 * 110.51425 * 334.28183 * 23 22 21 41 41 H 1.08999 * 110.51466 * 96.99717 * 23 22 21 42 42 H 1.09001 * 110.74459 * 279.08775 * 24 23 22 43 43 H 1.09007 * 110.74235 * 155.75629 * 24 23 22 44 44 H 1.08994 * 110.48366 * 203.72701 * 25 24 23 45 45 H 1.09001 * 110.59264 * 81.13827 * 25 24 23 46 46 H 1.08997 * 110.07908 * 240.04280 * 26 22 21 47 47 H 1.09005 * 110.07786 * 1.59365 * 26 22 21 48 48 H 1.09005 * 109.88035 * 118.12934 * 28 13 12 49 49 H 1.08997 * 109.88463 * 239.28895 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.3664 -2.5701 -1.1195 11 6 2.2333 -3.7003 0.0005 12 6 1.3755 -4.8035 0.6690 13 7 0.5946 -4.0999 1.7027 14 6 0.0722 -4.6618 2.8107 15 8 -0.5575 -3.9821 3.5980 16 7 0.2479 -5.9772 3.0462 17 6 -0.3147 -6.5867 4.2537 18 6 0.0323 -8.0766 4.2821 19 1 -0.2503 -8.5546 3.3443 20 6 -0.6519 -8.7742 5.4789 21 8 0.3314 -9.6963 5.9871 22 6 1.4857 -9.5756 5.1511 23 6 1.4824 -10.6592 4.0616 24 6 2.9790 -11.0261 3.8913 25 6 3.5180 -10.9544 5.3422 26 6 2.7722 -9.7538 5.9647 27 8 1.4429 -8.2692 4.5551 28 6 0.4745 -2.6851 1.3213 29 1 -0.4849 0.8400 -0.0004 30 1 -0.2681 -1.8419 -1.1662 31 1 3.1195 -3.4801 0.5956 32 1 2.5073 -3.9808 -1.0165 33 1 2.0165 -5.5578 1.1256 34 1 0.7103 -5.2638 -0.0614 35 1 0.7506 -6.5194 2.4183 36 1 0.1027 -6.0996 5.1350 37 1 -1.3980 -6.4660 4.2507 38 1 -0.9157 -8.0430 6.2430 39 1 -1.5394 -9.3125 5.1464 40 1 0.9110 -11.5279 4.3886 41 1 1.0778 -10.2632 3.1302 42 1 3.4847 -10.2996 3.2553 43 1 3.0862 -12.0336 3.4891 44 1 4.5933 -10.7765 5.3412 45 1 3.2843 -11.8710 5.8838 46 1 3.3858 -8.8556 5.8960 47 1 2.5299 -9.9634 7.0067 48 1 -0.5748 -2.4281 1.1760 49 1 0.9089 -2.0540 2.0966 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826845422.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:04 Heat of formation + Delta-G solvation = -192.848685 kcal Electronic energy + Delta-G solvation = -30747.465461 eV Core-core repulsion = 26480.307561 eV Total energy + Delta-G solvation = -4267.157900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.04749 -41.22242 -39.20353 -37.61762 -36.45990 -36.10832 -35.44210 -34.16912 -32.27238 -31.26368 -29.86242 -29.58717 -28.02418 -27.18647 -26.03982 -24.16122 -23.14245 -21.66167 -21.46804 -21.43770 -20.95166 -19.30971 -18.93030 -18.47396 -17.58129 -17.45206 -17.11570 -16.85336 -16.60304 -16.33245 -16.09262 -15.78021 -15.30969 -15.11538 -14.86384 -14.77590 -14.64824 -14.27309 -14.03735 -13.89509 -13.65931 -13.49701 -13.41482 -13.19539 -13.02285 -12.85690 -12.55526 -12.52901 -12.39275 -12.30642 -12.28521 -12.11617 -12.09788 -12.02045 -11.53418 -11.37049 -11.25122 -11.20502 -10.63973 -10.61398 -10.33359 -10.29549 -9.43715 -8.27414 -6.43004 1.40829 1.43346 1.52853 1.58283 2.09074 2.37378 2.38643 2.81425 2.95909 2.99125 3.38086 3.53368 3.59679 3.63961 3.80069 3.85625 4.04818 4.07819 4.15836 4.23108 4.36260 4.37751 4.42433 4.46322 4.51712 4.57945 4.63625 4.68847 4.70376 4.77147 4.80444 4.93844 4.97418 5.02553 5.03026 5.12386 5.15491 5.21722 5.25184 5.34919 5.39132 5.40630 5.47989 5.75466 5.99602 6.06099 6.12417 6.63497 7.00126 7.28919 7.38470 7.50441 8.78929 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.002320 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.644553 B =12064.415456 C =12504.138792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.557 4.557 8 H 0.068 0.932 9 C 0.234 3.766 10 O -0.588 6.588 11 C -0.111 4.111 12 C 0.108 3.892 13 N -0.634 5.634 14 C 0.711 3.289 15 O -0.643 6.643 16 N -0.727 5.727 17 C 0.148 3.852 18 C 0.041 3.959 19 H 0.114 0.886 20 C 0.027 3.973 21 O -0.388 6.388 22 C 0.241 3.759 23 C -0.153 4.153 24 C -0.120 4.120 25 C -0.119 4.119 26 C -0.123 4.123 27 O -0.375 6.375 28 C 0.138 3.862 29 H 0.271 0.729 30 H 0.378 0.622 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.027 0.973 49 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.526 -24.885 7.546 26.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.176 4.176 3 Si 0.790 3.210 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.086 0.914 9 C 0.194 3.806 10 O -0.398 6.398 11 C -0.149 4.149 12 C -0.014 4.014 13 N -0.370 5.370 14 C 0.413 3.587 15 O -0.525 6.525 16 N -0.384 5.384 17 C 0.024 3.976 18 C -0.017 4.017 19 H 0.131 0.869 20 C -0.050 4.050 21 O -0.310 6.310 22 C 0.164 3.836 23 C -0.191 4.191 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.161 4.161 27 O -0.296 6.296 28 C 0.014 3.986 29 H 0.081 0.919 30 H 0.229 0.771 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.102 0.898 48 H 0.046 0.954 49 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 3.393 -24.863 8.206 26.401 hybrid contribution -0.261 1.879 -0.078 1.899 sum 3.132 -22.984 8.128 24.580 Atomic orbital electron populations 1.69680 1.07120 1.28559 1.50359 1.25835 0.95830 1.02885 0.93087 0.85451 0.78592 0.78583 0.78402 1.19622 1.21131 1.19280 1.21857 0.93986 0.91364 1.52273 0.91402 1.19693 0.86360 0.93568 0.81025 1.86055 1.51474 1.53013 1.49212 1.22723 0.97063 0.93521 1.01548 1.22395 0.93861 0.95340 0.89759 1.47861 1.56042 1.11197 1.21949 1.15683 0.79667 0.82526 0.80805 1.90850 1.48813 1.63475 1.49412 1.44802 1.60174 1.06661 1.26777 1.21232 0.99350 0.90126 0.86896 1.24119 0.81563 0.95371 1.00617 0.86886 1.24068 0.92720 0.92784 0.95390 1.88857 1.25528 1.61577 1.54989 1.24158 0.88026 0.83445 0.87936 1.23090 0.99352 0.98552 0.98137 1.22475 0.93684 1.02659 0.96916 1.22378 1.00231 0.97225 0.95770 1.22217 0.93499 1.00513 0.99858 1.89493 1.24293 1.35329 1.80470 1.22417 0.98929 0.78707 0.98592 0.91940 0.77087 0.90007 0.88993 0.88410 0.90842 0.75376 0.92332 0.89155 0.89221 0.86665 0.89055 0.90114 0.91314 0.89344 0.90067 0.90197 0.90487 0.89758 0.95428 0.95186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.28 10.97 21.45 0.24 -50.05 16 2 C 0.02 1.28 5.28 84.66 0.45 1.72 16 3 Si 0.96 42.33 29.54 68.60 2.03 44.35 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.56 -29.35 8.11 25.60 0.21 -29.14 16 8 H 0.07 3.47 7.76 -2.91 -0.02 3.45 16 9 C 0.23 11.41 0.86 -10.35 -0.01 11.40 16 10 O -0.59 -29.97 13.08 -148.98 -1.95 -31.91 16 11 C -0.11 -4.20 6.23 31.99 0.20 -4.00 16 12 C 0.11 3.53 6.57 86.86 0.57 4.10 16 13 N -0.63 -26.28 3.33 -829.73 -2.76 -29.04 16 14 C 0.71 28.85 8.49 179.05 1.52 30.37 16 15 O -0.64 -31.87 16.67 -3.98 -0.07 -31.94 16 16 N -0.73 -20.72 5.52 -478.53 -2.64 -23.35 16 17 C 0.15 3.50 5.30 86.38 0.46 3.96 16 18 C 0.04 0.70 3.06 31.11 0.10 0.80 16 19 H 0.11 1.47 7.51 -2.39 -0.02 1.45 16 20 C 0.03 0.41 7.67 72.49 0.56 0.97 16 21 O -0.39 -7.46 10.86 -126.01 -1.37 -8.82 16 22 C 0.24 4.31 1.41 30.90 0.04 4.35 16 23 C -0.15 -2.04 6.08 31.51 0.19 -1.85 16 24 C -0.12 -1.36 6.91 31.95 0.22 -1.14 16 25 C -0.12 -1.37 6.84 31.75 0.22 -1.15 16 26 C -0.12 -2.01 6.46 31.17 0.20 -1.81 16 27 O -0.37 -7.96 10.84 -126.01 -1.37 -9.33 16 28 C 0.14 6.97 5.54 86.73 0.48 7.45 16 29 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.38 20.32 6.98 -74.06 -0.52 19.80 16 31 H 0.08 3.00 8.02 -2.39 -0.02 2.98 16 32 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.10 2.40 7.30 -2.38 -0.02 2.38 16 34 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.41 9.44 6.95 -92.71 -0.64 8.80 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.09 1.34 7.85 -2.39 -0.02 1.33 16 39 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 41 H 0.08 1.01 7.22 -2.39 -0.02 0.99 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 1.40 7.97 -2.39 -0.02 1.38 16 47 H 0.08 1.37 7.98 -2.38 -0.02 1.35 16 48 H 0.03 1.55 8.07 -2.38 -0.02 1.53 16 49 H 0.03 1.68 7.81 -2.39 -0.02 1.66 16 Total: -1.00 -69.90 388.04 -2.68 -72.58 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.19 Total: 41.49 kcal Atomic # 6 Polarization: 20.62 SS G_CDS: 5.40 Total: 26.02 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -5.16 Total: -102.44 kcal Atomic # 8 Polarization: -77.25 SS G_CDS: -4.75 Total: -82.00 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal Total: -69.90 -2.68 -72.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826845422.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.265 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds