Wall clock time and date at job start Sat Apr 11 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99910 * 2 1 4 4 C 1.50703 * 109.47047 * 66.04532 * 3 2 1 5 5 H 1.07998 * 120.00416 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99700 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00165 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99608 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46962 * 60.00449 * 8 6 4 10 10 H 1.48504 * 109.47218 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47426 * 299.99983 * 8 6 4 12 12 C 1.46902 * 110.99915 * 236.04850 * 2 1 3 13 13 C 1.52998 * 109.46946 * 293.95168 * 12 2 1 14 14 H 1.09000 * 109.47243 * 59.99745 * 13 12 2 15 15 O 1.42905 * 109.46850 * 300.00152 * 13 12 2 16 16 C 1.52999 * 109.47234 * 180.02562 * 13 12 2 17 17 N 1.46493 * 109.47290 * 184.99960 * 16 13 12 18 18 C 1.35064 * 125.92507 * 125.02141 * 17 16 13 19 19 C 1.35059 * 107.99468 * 179.72576 * 18 17 16 20 20 C 1.40905 * 107.85145 * 0.43100 * 19 18 17 21 21 C 1.48285 * 126.04879 * 179.82409 * 20 19 18 22 22 C 1.39506 * 119.96353 * 359.44461 * 21 20 19 23 23 C 1.37647 * 120.02523 * 180.27987 * 22 21 20 24 24 C 1.39767 * 119.97133 * 359.97438 * 23 22 21 25 25 C 1.43199 * 120.02944 * 180.02562 * 24 23 22 26 26 N 9.58454 * 134.43758 * 165.03113 * 15 1 2 27 27 C 1.39773 * 119.93825 * 0.02562 * 24 23 22 28 28 C 1.37642 * 119.96549 * 0.02562 * 27 24 23 29 29 N 1.31689 * 107.90443 * 359.56674 * 20 19 18 30 30 H 1.09002 * 109.47134 * 183.95802 * 1 2 3 31 31 H 1.09001 * 109.47168 * 303.95216 * 1 2 3 32 32 H 1.08998 * 109.47193 * 63.95256 * 1 2 3 33 33 H 1.09001 * 109.47585 * 186.04875 * 3 2 1 34 34 H 1.08998 * 109.47349 * 306.04685 * 3 2 1 35 35 H 0.96996 * 119.99956 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46690 * 173.95223 * 12 2 1 37 37 H 1.09000 * 109.47093 * 53.95290 * 12 2 1 38 38 H 0.96701 * 113.99989 * 299.99570 * 15 13 12 39 39 H 1.09003 * 109.47243 * 64.99697 * 16 13 12 40 40 H 1.09005 * 109.46700 * 305.00285 * 16 13 12 41 41 H 1.07995 * 126.00361 * 0.02562 * 18 17 16 42 42 H 1.08005 * 126.07470 * 180.25655 * 19 18 17 43 43 H 1.07994 * 119.98980 * 0.25267 * 22 21 20 44 44 H 1.08003 * 120.01113 * 179.97438 * 23 22 21 45 45 H 1.07991 * 120.01975 * 179.97438 * 27 24 23 46 46 H 1.07999 * 119.98375 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5113 2.0488 6 6 2.0276 3.3492 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5838 4.1865 3.1387 9 1 2.1756 3.4287 4.2703 10 1 2.1158 5.5729 3.1387 11 1 0.1067 4.2237 3.2865 12 6 1.9954 -0.7659 -1.1376 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3475 -0.9323 15 8 2.2009 -2.7390 0.2426 16 6 2.1803 -3.0405 -2.1549 17 7 1.7311 -4.4314 -2.0568 18 6 1.0635 -5.1176 -3.0095 19 6 0.8362 -6.3647 -2.5436 20 6 1.3786 -6.4463 -1.2456 21 6 1.3507 -7.6365 -0.3615 22 6 0.7356 -8.8115 -0.7941 23 6 0.7039 -9.9152 0.0278 24 6 1.2889 -9.8585 1.2959 25 6 1.2572 -11.0061 2.1518 26 7 1.2328 -11.9168 2.8302 27 6 1.9049 -8.6805 1.7279 28 6 1.9341 -7.5780 0.9043 29 7 1.9195 -5.2804 -0.9588 30 1 -0.3633 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8525 32 1 -0.3633 0.4513 -0.9233 33 1 3.0797 1.3445 -0.1083 34 1 1.5611 1.9274 -0.8309 35 1 2.9873 4.9177 0.7773 36 1 3.0797 -0.6610 -1.1756 37 1 1.5611 -0.3872 -2.0628 38 1 3.1653 -2.6770 0.2786 39 1 3.2697 -3.0086 -2.1409 40 1 1.8160 -2.6057 -3.0857 41 1 0.7679 -4.7374 -3.9762 42 1 0.3267 -7.1576 -3.0709 43 1 0.2836 -8.8551 -1.7739 44 1 0.2273 -10.8247 -0.3071 45 1 2.3569 -8.6350 2.7076 46 1 2.4103 -6.6678 1.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840750200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:08 Heat of formation + Delta-G solvation = 92.741362 kcal Electronic energy + Delta-G solvation = -27427.455356 eV Core-core repulsion = 23512.283240 eV Total energy + Delta-G solvation = -3915.172115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41164 -39.59933 -38.11035 -36.76325 -35.61567 -33.77782 -32.57315 -31.69998 -31.60167 -30.15552 -29.37051 -27.25140 -26.46533 -24.85690 -23.74826 -23.20866 -21.66200 -20.99067 -20.33080 -20.22756 -19.27394 -17.59999 -16.54252 -16.31901 -16.15441 -15.66313 -15.30815 -15.16201 -14.86615 -14.65713 -14.37963 -14.31342 -14.11628 -13.88084 -13.76300 -13.69267 -13.34539 -13.19764 -12.96541 -12.79908 -12.64434 -12.23827 -12.02107 -11.95618 -11.54135 -11.43710 -11.26420 -10.97087 -10.88341 -10.76747 -10.68389 -10.46965 -10.24918 -10.00421 -9.69273 -9.42820 -9.22629 -8.97764 -8.47492 -8.45367 -7.29755 -6.07023 -4.08153 0.17520 0.98892 1.74876 2.24143 2.30635 2.33597 2.98958 3.31903 3.35636 3.39298 3.52927 3.64303 3.96088 4.29925 4.38085 4.44909 4.49392 4.54900 4.65881 4.76125 4.92364 4.93619 5.05491 5.23029 5.27215 5.29109 5.30978 5.33852 5.45482 5.48219 5.57902 5.66450 5.82622 5.89287 5.91719 6.06911 6.14248 6.17093 6.25900 6.36312 6.43327 6.69984 6.79040 7.14280 7.18713 7.24585 7.51292 7.74376 7.92975 8.03758 8.12164 8.48253 8.99411 9.56285 11.03824 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.001914 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.283722 B =14622.693979 C =16073.690702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.527 5.527 3 C 0.193 3.807 4 C -0.507 4.507 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.105 3.895 14 H 0.098 0.902 15 O -0.525 6.525 16 C 0.095 3.905 17 N -0.355 5.355 18 C 0.048 3.952 19 C -0.257 4.257 20 C 0.081 3.919 21 C 0.029 3.971 22 C -0.102 4.102 23 C -0.070 4.070 24 C -0.033 4.033 25 C 0.257 3.743 26 N -0.422 5.422 27 C -0.068 4.068 28 C -0.094 4.094 29 N -0.239 5.239 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.008 0.992 33 H 0.029 0.971 34 H -0.010 1.010 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.369 0.631 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.174 0.826 42 H 0.148 0.852 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.525 -23.707 -10.504 26.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.251 5.251 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.203 1.203 12 C -0.105 4.105 13 C 0.044 3.956 14 H 0.115 0.885 15 O -0.328 6.328 16 C -0.027 4.027 17 N -0.137 5.137 18 C -0.096 4.096 19 C -0.286 4.286 20 C -0.083 4.083 21 C 0.026 3.974 22 C -0.122 4.122 23 C -0.091 4.091 24 C -0.037 4.037 25 C -0.058 4.058 26 N -0.097 5.097 27 C -0.088 4.088 28 C -0.113 4.113 29 N -0.062 5.062 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.007 0.993 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.216 0.784 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.191 0.809 42 H 0.166 0.834 43 H 0.156 0.844 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.260 -24.380 -8.086 25.785 hybrid contribution -0.354 1.195 -1.223 1.746 sum -2.614 -23.185 -9.309 25.121 Atomic orbital electron populations 1.22253 0.88878 0.99562 1.00502 1.62004 1.06902 1.17508 1.38677 1.19749 0.95282 0.81396 0.96721 1.21119 1.34911 0.96887 1.01671 0.91820 1.24990 0.95257 0.97337 0.97048 1.69941 1.38358 1.11524 1.34146 0.86539 0.78715 0.78275 0.83766 1.20082 1.21374 1.20285 1.22689 1.00824 0.93140 0.93858 1.22159 0.98833 0.91203 0.83399 0.88450 1.86688 1.24938 1.84590 1.36590 1.22710 1.01349 0.76533 1.02070 1.48626 1.43059 1.10892 1.11167 1.22530 0.98187 0.92998 0.95930 1.21390 1.12410 0.98248 0.96594 1.20675 1.00657 0.92706 0.94245 1.18074 0.96318 0.90522 0.92459 1.21029 0.99375 0.91414 1.00350 1.21031 0.97371 0.98934 0.91726 1.16098 1.05029 0.89396 0.93188 1.25745 0.93655 0.93040 0.93359 1.81258 1.08594 1.10694 1.09194 1.21142 0.96769 0.90911 1.00016 1.21282 0.98483 0.98928 0.92631 1.77793 1.21721 0.99819 1.06888 0.93579 0.90550 0.97303 0.95301 0.99257 0.92868 0.90808 0.95193 0.78416 0.89053 0.87722 0.80887 0.83404 0.84444 0.84715 0.84629 0.83812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.14 60.06 0.55 1.24 16 2 N -0.53 -10.77 4.62 -244.37 -1.13 -11.90 16 3 C 0.19 4.86 4.72 -4.97 -0.02 4.84 16 4 C -0.51 -14.05 8.46 -34.44 -0.29 -14.34 16 5 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.02 0.38 4.62 -3.82 -0.02 0.36 16 13 C 0.11 1.34 3.05 -26.73 -0.08 1.26 16 14 H 0.10 1.38 6.55 -51.93 -0.34 1.04 16 15 O -0.52 -7.77 12.23 -35.23 -0.43 -8.20 16 16 C 0.10 0.88 6.17 -4.05 -0.02 0.85 16 17 N -0.36 -3.73 3.68 -61.41 -0.23 -3.96 16 18 C 0.05 0.40 11.42 -17.26 -0.20 0.21 16 19 C -0.26 -2.20 10.17 -39.70 -0.40 -2.60 16 20 C 0.08 0.85 6.99 -82.79 -0.58 0.27 16 21 C 0.03 0.26 5.88 -104.82 -0.62 -0.36 16 22 C -0.10 -0.65 9.56 -39.32 -0.38 -1.03 16 23 C -0.07 -0.42 9.74 -39.23 -0.38 -0.80 16 24 C -0.03 -0.24 5.74 -106.83 -0.61 -0.85 16 25 C 0.26 2.34 15.32 -22.48 -0.34 1.99 16 26 N -0.42 -4.86 18.54 41.83 0.78 -4.08 16 27 C -0.07 -0.50 9.74 -39.23 -0.38 -0.88 16 28 C -0.09 -0.81 9.67 -39.33 -0.38 -1.19 16 29 N -0.24 -2.96 11.20 33.42 0.37 -2.58 16 30 H 0.05 0.78 6.47 -51.93 -0.34 0.44 16 31 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 32 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 37 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 38 H 0.37 4.54 9.04 45.56 0.41 4.95 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.10 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.15 0.85 7.32 -52.48 -0.38 0.47 16 43 H 0.14 0.58 7.01 -52.49 -0.37 0.21 16 44 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 45 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 46 H 0.14 1.33 7.84 -52.49 -0.41 0.92 16 LS Contribution 397.31 15.07 5.99 5.99 Total: -1.00 -34.20 397.31 -8.68 -42.88 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -5.49 Total: 0.49 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -4.26 Total: -9.57 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: 0.53 Total: -48.06 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.43 Total: -8.20 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.20 -8.68 -42.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840750200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.625 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds