Wall clock time and date at job start Sat Apr 11 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99910 * 2 1 4 4 C 1.50703 * 109.47047 * 66.04532 * 3 2 1 5 5 H 1.07998 * 120.00416 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99700 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00165 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99608 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.46962 * 60.00449 * 8 6 4 10 10 H 1.48504 * 109.47218 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47426 * 299.99983 * 8 6 4 12 12 C 1.46902 * 110.99915 * 236.04850 * 2 1 3 13 13 C 1.52998 * 109.46946 * 293.95168 * 12 2 1 14 14 H 1.09000 * 109.47243 * 59.99745 * 13 12 2 15 15 O 1.42905 * 109.46850 * 300.00152 * 13 12 2 16 16 C 1.52999 * 109.47234 * 180.02562 * 13 12 2 17 17 N 1.46493 * 109.47290 * 184.99960 * 16 13 12 18 18 C 1.35064 * 125.92507 * 125.02141 * 17 16 13 19 19 C 1.35059 * 107.99468 * 179.72576 * 18 17 16 20 20 C 1.40905 * 107.85145 * 0.43100 * 19 18 17 21 21 C 1.48285 * 126.04879 * 179.82409 * 20 19 18 22 22 C 1.39506 * 119.96353 * 359.44461 * 21 20 19 23 23 C 1.37647 * 120.02523 * 180.27987 * 22 21 20 24 24 C 1.39767 * 119.97133 * 359.97438 * 23 22 21 25 25 C 1.43199 * 120.02944 * 180.02562 * 24 23 22 26 26 N 9.58454 * 134.43758 * 165.03113 * 15 1 2 27 27 C 1.39773 * 119.93825 * 0.02562 * 24 23 22 28 28 C 1.37642 * 119.96549 * 0.02562 * 27 24 23 29 29 N 1.31689 * 107.90443 * 359.56674 * 20 19 18 30 30 H 1.09002 * 109.47134 * 183.95802 * 1 2 3 31 31 H 1.09001 * 109.47168 * 303.95216 * 1 2 3 32 32 H 1.08998 * 109.47193 * 63.95256 * 1 2 3 33 33 H 1.09001 * 109.47585 * 186.04875 * 3 2 1 34 34 H 1.08998 * 109.47349 * 306.04685 * 3 2 1 35 35 H 0.96996 * 119.99956 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46690 * 173.95223 * 12 2 1 37 37 H 1.09000 * 109.47093 * 53.95290 * 12 2 1 38 38 H 0.96701 * 113.99989 * 299.99570 * 15 13 12 39 39 H 1.09003 * 109.47243 * 64.99697 * 16 13 12 40 40 H 1.09005 * 109.46700 * 305.00285 * 16 13 12 41 41 H 1.07995 * 126.00361 * 0.02562 * 18 17 16 42 42 H 1.08005 * 126.07470 * 180.25655 * 19 18 17 43 43 H 1.07994 * 119.98980 * 0.25267 * 22 21 20 44 44 H 1.08003 * 120.01113 * 179.97438 * 23 22 21 45 45 H 1.07991 * 120.01975 * 179.97438 * 27 24 23 46 46 H 1.07999 * 119.98375 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0746 1.5113 2.0488 6 6 2.0276 3.3492 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5838 4.1865 3.1387 9 1 2.1756 3.4287 4.2703 10 1 2.1158 5.5729 3.1387 11 1 0.1067 4.2237 3.2865 12 6 1.9954 -0.7659 -1.1376 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3475 -0.9323 15 8 2.2009 -2.7390 0.2426 16 6 2.1803 -3.0405 -2.1549 17 7 1.7311 -4.4314 -2.0568 18 6 1.0635 -5.1176 -3.0095 19 6 0.8362 -6.3647 -2.5436 20 6 1.3786 -6.4463 -1.2456 21 6 1.3507 -7.6365 -0.3615 22 6 0.7356 -8.8115 -0.7941 23 6 0.7039 -9.9152 0.0278 24 6 1.2889 -9.8585 1.2959 25 6 1.2572 -11.0061 2.1518 26 7 1.2328 -11.9168 2.8302 27 6 1.9049 -8.6805 1.7279 28 6 1.9341 -7.5780 0.9043 29 7 1.9195 -5.2804 -0.9588 30 1 -0.3633 -1.0252 0.0709 31 1 -0.3633 0.5740 0.8525 32 1 -0.3633 0.4513 -0.9233 33 1 3.0797 1.3445 -0.1083 34 1 1.5611 1.9274 -0.8309 35 1 2.9873 4.9177 0.7773 36 1 3.0797 -0.6610 -1.1756 37 1 1.5611 -0.3872 -2.0628 38 1 3.1653 -2.6770 0.2786 39 1 3.2697 -3.0086 -2.1409 40 1 1.8160 -2.6057 -3.0857 41 1 0.7679 -4.7374 -3.9762 42 1 0.3267 -7.1576 -3.0709 43 1 0.2836 -8.8551 -1.7739 44 1 0.2273 -10.8247 -0.3071 45 1 2.3569 -8.6350 2.7076 46 1 2.4103 -6.6678 1.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840750200.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:07 Heat of formation + Delta-G solvation = 69.541135 kcal Electronic energy + Delta-G solvation = -27428.461393 eV Core-core repulsion = 23512.283240 eV Total energy + Delta-G solvation = -3916.178152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07337 -40.20090 -39.33736 -37.54348 -37.06729 -34.61655 -34.53108 -32.46882 -32.16169 -30.82109 -30.52625 -29.01391 -27.65919 -26.09893 -24.80482 -23.80891 -22.99023 -21.89149 -21.48023 -20.99586 -19.88072 -18.63870 -18.20784 -17.30714 -17.12110 -16.79958 -16.28523 -16.12785 -16.02092 -15.73601 -15.43637 -15.27759 -15.15183 -14.94660 -14.57312 -14.46919 -14.31942 -14.03168 -13.92245 -13.78903 -13.62504 -13.50583 -13.23112 -13.00803 -12.77915 -12.64475 -12.57670 -12.53976 -12.40789 -12.10193 -12.03655 -11.74382 -11.48810 -11.33164 -11.03756 -10.61486 -10.59089 -9.96095 -9.65439 -9.12124 -8.95205 -8.21186 -6.30369 -0.44409 0.45588 1.09738 1.40701 1.43215 1.51142 1.58462 1.61642 1.67712 2.30950 2.39795 2.86144 3.03961 3.07322 3.11924 3.51501 3.65748 3.76801 3.86022 3.93115 3.99921 4.09196 4.21698 4.26292 4.38828 4.42820 4.49639 4.51282 4.70505 4.71938 4.73420 4.77185 4.91160 5.01201 5.02485 5.06702 5.12582 5.17421 5.26704 5.31196 5.35459 5.59594 5.64223 5.74595 5.85377 6.05034 6.19296 6.31248 6.44032 6.64097 6.83743 6.85216 6.97542 7.39116 8.89100 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.001914 C = 0.001742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.283722 B =14622.693979 C =16073.690702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.541 5.541 3 C 0.209 3.791 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.004 3.996 7 N -0.932 5.932 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.085 0.915 15 O -0.548 6.548 16 C 0.103 3.897 17 N -0.368 5.368 18 C 0.050 3.950 19 C -0.264 4.264 20 C 0.069 3.931 21 C 0.014 3.986 22 C -0.093 4.093 23 C -0.058 4.058 24 C -0.039 4.039 25 C 0.282 3.718 26 N -0.468 5.468 27 C -0.066 4.066 28 C -0.108 4.108 29 N -0.287 5.287 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.015 0.985 33 H 0.007 0.993 34 H -0.035 1.035 35 H 0.264 0.736 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.377 0.623 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.211 0.789 42 H 0.177 0.823 43 H 0.165 0.835 44 H 0.162 0.838 45 H 0.144 0.856 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -25.029 -12.033 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.265 5.265 3 C 0.083 3.917 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.195 4.195 7 N -0.572 5.572 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.104 4.104 13 C 0.057 3.943 14 H 0.103 0.897 15 O -0.353 6.353 16 C -0.019 4.019 17 N -0.150 5.150 18 C -0.094 4.094 19 C -0.292 4.292 20 C -0.094 4.094 21 C 0.011 3.989 22 C -0.112 4.112 23 C -0.078 4.078 24 C -0.044 4.044 25 C -0.033 4.033 26 N -0.144 5.144 27 C -0.087 4.087 28 C -0.128 4.128 29 N -0.110 5.110 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.034 0.966 33 H 0.025 0.975 34 H -0.018 1.018 35 H 0.073 0.927 36 H 0.094 0.906 37 H 0.063 0.937 38 H 0.225 0.775 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.227 0.773 42 H 0.194 0.806 43 H 0.183 0.817 44 H 0.180 0.820 45 H 0.162 0.838 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.363 -25.728 -9.623 27.674 hybrid contribution -0.019 1.560 -0.813 1.759 sum -3.381 -24.168 -10.436 26.541 Atomic orbital electron populations 1.22178 0.88033 1.00601 0.99738 1.61872 1.07787 1.15007 1.41820 1.19383 0.93802 0.83739 0.94810 1.21442 1.34867 0.97483 1.02558 0.92403 1.25850 0.95062 0.98036 1.00513 1.70052 1.39252 1.11895 1.36028 0.85495 0.78768 0.77252 0.79461 1.19593 1.20691 1.19413 1.22782 1.00869 0.94171 0.92549 1.21983 0.98137 0.89755 0.84415 0.89694 1.86650 1.25796 1.84745 1.38087 1.22622 1.01827 0.76008 1.01417 1.48698 1.43843 1.11022 1.11458 1.23210 0.96713 0.92808 0.96686 1.21802 1.12293 0.99293 0.95845 1.21090 1.00327 0.92632 0.95369 1.18288 0.97105 0.91142 0.92375 1.21282 0.98355 0.90250 1.01362 1.21330 0.96059 0.99763 0.90645 1.16163 1.05839 0.88620 0.93733 1.25900 0.92275 0.92580 0.92505 1.81282 1.10325 1.12190 1.10562 1.21188 0.96610 0.90604 1.00265 1.21201 0.99434 0.98800 0.93354 1.77742 1.23665 1.01065 1.08574 0.91262 0.92985 0.96617 0.97456 1.01757 0.92678 0.90577 0.93723 0.77522 0.88247 0.84458 0.77259 0.80588 0.81732 0.82020 0.83788 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.14 127.69 1.17 2.79 16 2 N -0.54 -22.33 4.62 -927.05 -4.28 -26.61 16 3 C 0.21 10.80 4.72 85.56 0.40 11.20 16 4 C -0.53 -29.68 8.46 25.60 0.22 -29.46 16 5 H 0.06 3.27 7.12 -2.91 -0.02 3.25 16 6 C 0.00 0.20 5.46 84.66 0.46 0.66 16 7 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 8 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 C 0.03 0.76 4.62 86.30 0.40 1.16 16 13 C 0.12 2.89 3.05 30.59 0.09 2.98 16 14 H 0.09 2.30 6.55 -2.39 -0.02 2.28 16 15 O -0.55 -16.29 12.23 -148.98 -1.82 -18.11 16 16 C 0.10 1.68 6.17 86.38 0.53 2.22 16 17 N -0.37 -7.04 3.68 -348.19 -1.28 -8.33 16 18 C 0.05 0.68 11.42 83.46 0.95 1.63 16 19 C -0.26 -3.76 10.17 22.19 0.23 -3.54 16 20 C 0.07 1.38 6.99 42.49 0.30 1.68 16 21 C 0.01 0.22 5.88 -19.99 -0.12 0.11 16 22 C -0.09 -0.94 9.56 22.44 0.21 -0.72 16 23 C -0.06 -0.53 9.74 22.50 0.22 -0.31 16 24 C -0.04 -0.52 5.74 -21.29 -0.12 -0.64 16 25 C 0.28 4.87 15.32 88.33 1.35 6.22 16 26 N -0.47 -10.60 18.54 19.00 0.35 -10.25 16 27 C -0.07 -0.95 9.74 22.50 0.22 -0.73 16 28 C -0.11 -1.89 9.67 22.43 0.22 -1.67 16 29 N -0.29 -6.97 11.20 -48.19 -0.54 -7.51 16 30 H 0.07 2.29 6.47 -2.39 -0.02 2.27 16 31 H 0.05 2.20 6.76 -2.39 -0.02 2.18 16 32 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.01 0.41 7.93 -2.39 -0.02 0.39 16 34 H -0.04 -1.96 8.12 -2.39 -0.02 -1.98 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.08 2.23 7.93 -2.39 -0.02 2.21 16 37 H 0.04 1.22 8.12 -2.39 -0.02 1.20 16 38 H 0.38 9.48 9.04 -74.06 -0.67 8.81 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.14 1.32 8.07 -2.38 -0.02 1.30 16 41 H 0.21 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.18 1.31 7.32 -2.91 -0.02 1.28 16 43 H 0.17 0.72 7.01 -2.91 -0.02 0.70 16 44 H 0.16 0.63 8.06 -2.91 -0.02 0.61 16 45 H 0.14 1.70 8.06 -2.92 -0.02 1.67 16 46 H 0.13 2.59 7.84 -2.91 -0.02 2.56 16 Total: -1.00 -76.36 397.31 1.81 -74.55 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.34 Total: 11.29 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: 6.73 Total: -6.42 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -5.47 Total: -107.61 kcal Atomic # 8 Polarization: -16.29 SS G_CDS: -1.82 Total: -18.11 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -76.36 1.81 -74.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840750200.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.087 kcal (2) G-P(sol) polarization free energy of solvation -76.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds