Wall clock time and date at job start Sat Apr 11 2020 06:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00384 * 2 1 4 4 C 1.52996 * 109.47256 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46971 * 179.97438 * 4 3 2 6 6 N 1.46506 * 109.47161 * 180.02562 * 5 4 3 7 7 C 1.37315 * 125.82424 * 265.02875 * 6 5 4 8 8 N 1.29420 * 108.83100 * 179.97438 * 7 6 5 9 9 N 1.40169 * 108.13424 * 359.97438 * 8 7 6 10 10 C 1.46502 * 126.35386 * 180.02562 * 9 8 7 11 11 N 1.46904 * 109.47068 * 89.97232 * 10 9 8 12 12 C 1.46842 * 111.00112 * 66.04560 * 11 10 9 13 13 C 1.53034 * 109.52608 * 174.15896 * 12 11 10 14 14 C 1.53121 * 109.27654 * 59.17943 * 13 12 11 15 15 C 1.53113 * 109.16292 * 302.34870 * 14 13 12 16 16 H 1.09004 * 109.50021 * 297.67214 * 15 14 13 17 17 C 1.50701 * 109.50790 * 177.59480 * 15 14 13 18 18 H 1.07999 * 120.00033 * 240.00149 * 17 15 14 19 19 C 1.37878 * 119.99903 * 59.99232 * 17 15 14 20 20 N 1.31513 * 119.99977 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00089 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47119 * 60.00767 * 21 19 17 23 23 H 1.48503 * 109.47532 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47543 * 300.00750 * 21 19 17 25 25 C 1.46846 * 110.99941 * 301.83499 * 11 10 9 26 26 C 1.34811 * 125.82984 * 84.71360 * 6 5 4 27 27 S 1.71198 * 126.30182 * 359.97438 * 26 6 5 28 28 H 1.09003 * 109.46627 * 60.00010 * 1 2 3 29 29 H 1.09000 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47297 * 300.00217 * 1 2 3 31 31 H 1.09008 * 109.47088 * 59.99572 * 3 2 1 32 32 H 1.09002 * 109.46667 * 300.00126 * 3 2 1 33 33 H 1.09004 * 109.47172 * 60.00483 * 4 3 2 34 34 H 1.08998 * 109.47218 * 299.99888 * 4 3 2 35 35 H 1.08996 * 109.47547 * 60.00285 * 5 4 3 36 36 H 1.08998 * 109.47097 * 300.00010 * 5 4 3 37 37 H 1.08002 * 125.58610 * 0.02562 * 7 6 5 38 38 H 1.08996 * 109.47508 * 209.97524 * 10 9 8 39 39 H 1.09000 * 109.47171 * 329.97594 * 10 9 8 40 40 H 1.08994 * 109.46427 * 294.17971 * 12 11 10 41 41 H 1.09004 * 109.45867 * 54.14442 * 12 11 10 42 42 H 1.08994 * 109.50705 * 179.12005 * 13 12 11 43 43 H 1.09001 * 109.50503 * 299.24237 * 13 12 11 44 44 H 1.09002 * 109.51971 * 62.25439 * 14 13 12 45 45 H 1.09001 * 109.52237 * 182.37655 * 14 13 12 46 46 H 0.97005 * 120.00312 * 179.97438 * 20 19 17 47 47 H 1.08998 * 109.46318 * 305.85733 * 25 11 10 48 48 H 1.09002 * 109.46167 * 65.82314 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5822 0.0000 6 7 5.6183 2.4665 0.0000 7 6 6.4271 2.4997 1.1091 8 7 7.6583 2.3686 0.7324 9 7 7.6764 2.2438 -0.6636 10 6 8.8637 2.0745 -1.5050 11 7 9.1511 0.6427 -1.6642 12 6 8.0868 -0.0265 -2.4230 13 6 8.4874 -1.4784 -2.6942 14 6 8.7185 -2.1963 -1.3617 15 6 9.7970 -1.4517 -0.5700 16 1 10.7351 -1.4725 -1.1247 17 6 9.9889 -2.1175 0.7682 18 1 9.8185 -1.5607 1.6778 19 6 10.3818 -3.4376 0.8313 20 7 10.5895 -4.1155 -0.2763 21 14 10.6189 -4.2632 2.4900 22 1 9.3406 -4.2330 3.2453 23 1 11.0405 -5.6725 2.2859 24 1 11.6647 -3.5405 3.2578 25 6 9.3585 -0.0005 -0.3604 26 6 6.3970 2.3034 -1.0883 27 16 5.8614 2.1938 -2.7106 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8575 0.6435 -0.8892 34 1 3.8567 0.6438 0.8908 35 1 3.8360 3.1237 0.8895 36 1 3.8365 3.1226 -0.8904 37 1 6.0909 2.6154 2.1290 38 1 8.6823 2.5196 -2.4833 39 1 9.7154 2.5659 -1.0347 40 1 7.1620 -0.0065 -1.8465 41 1 7.9354 0.4915 -3.3701 42 1 7.6905 -1.9792 -3.2439 43 1 9.4047 -1.4990 -3.2826 44 1 7.7908 -2.2100 -0.7896 45 1 9.0450 -3.2190 -1.5508 46 1 10.8663 -5.0442 -0.2319 47 1 10.1307 0.5363 0.1906 48 1 8.4277 0.0194 0.2065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853525720.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:13 Heat of formation + Delta-G solvation = 28.989322 kcal Electronic energy + Delta-G solvation = -28535.377669 eV Core-core repulsion = 24752.885009 eV Total energy + Delta-G solvation = -3782.492660 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.79901 -40.07638 -38.99950 -37.18489 -35.75703 -34.25230 -32.94091 -32.59677 -31.74961 -28.68931 -27.64574 -27.02355 -26.19501 -24.66429 -23.99814 -23.37569 -23.05414 -22.58558 -20.61406 -19.25810 -18.57783 -17.74317 -17.71891 -17.54021 -17.11950 -16.83715 -16.57331 -16.29157 -16.11238 -15.83626 -15.59487 -15.17416 -15.16753 -14.53468 -14.41964 -14.24139 -13.74773 -13.49793 -13.42487 -13.13095 -12.94961 -12.84816 -12.76059 -12.66706 -12.53757 -12.38050 -12.13846 -12.07250 -11.95554 -11.88376 -11.71191 -11.60014 -11.46907 -10.96161 -10.76937 -10.61751 -10.43525 -9.83871 -8.85110 -8.73261 -8.10547 -6.25619 -0.03111 0.26150 0.78473 1.19151 1.39694 1.41177 1.48921 1.61330 2.39966 2.80867 2.85025 3.08070 3.16349 3.58280 3.73506 3.94254 4.00639 4.02759 4.07847 4.10980 4.18693 4.26987 4.34668 4.36445 4.45124 4.48720 4.54563 4.55629 4.59850 4.64174 4.81074 4.85704 4.86768 4.95135 5.00443 5.06148 5.06582 5.10944 5.26503 5.41375 5.44883 5.58226 5.76630 5.93773 5.97613 6.08532 6.15853 6.25138 6.35567 6.85082 7.42294 8.94044 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.003622 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.131807 B = 7728.458448 C = 8932.057778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.427 6.427 3 C 0.070 3.930 4 C -0.134 4.134 5 C 0.123 3.877 6 N -0.489 5.489 7 C 0.265 3.735 8 N -0.304 5.304 9 N -0.391 5.391 10 C 0.296 3.704 11 N -0.527 5.527 12 C 0.082 3.918 13 C -0.114 4.114 14 C -0.098 4.098 15 C 0.055 3.945 16 H 0.002 0.998 17 C -0.536 4.536 18 H 0.051 0.949 19 C 0.015 3.985 20 N -0.915 5.915 21 Si 0.955 3.045 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.268 1.268 25 C 0.094 3.906 26 C 0.463 3.537 27 S -0.655 6.655 28 H 0.050 0.950 29 H 0.087 0.913 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.297 0.703 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.015 0.985 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.010 0.990 45 H 0.061 0.939 46 H 0.261 0.739 47 H 0.064 0.936 48 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.631 17.596 5.445 25.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.346 6.346 3 C -0.007 4.007 4 C -0.173 4.173 5 C 0.003 3.997 6 N -0.188 5.188 7 C -0.034 4.034 8 N -0.122 5.122 9 N -0.186 5.186 10 C 0.088 3.912 11 N -0.250 5.250 12 C -0.046 4.046 13 C -0.152 4.152 14 C -0.137 4.137 15 C 0.036 3.964 16 H 0.020 0.980 17 C -0.574 4.574 18 H 0.070 0.930 19 C -0.184 4.184 20 N -0.554 5.554 21 Si 0.781 3.219 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.033 4.033 26 C 0.098 3.902 27 S -0.529 6.529 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.125 0.875 37 H 0.312 0.688 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.033 0.967 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.029 0.971 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.082 0.918 48 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -16.212 17.086 4.430 23.967 hybrid contribution -0.959 -0.766 1.472 1.917 sum -17.171 16.320 5.902 24.414 Atomic orbital electron populations 1.22911 0.79186 1.03584 1.01211 1.87868 1.21785 1.29282 1.95701 1.22394 0.91374 0.84614 1.02299 1.21755 0.95604 0.96921 1.02976 1.22153 0.71028 0.98045 1.08469 1.46556 1.10745 1.57440 1.04096 1.27735 0.84400 0.94498 0.96770 1.77355 1.20592 1.22986 0.91306 1.51118 1.06920 1.56164 1.04420 1.23449 0.82769 0.90594 0.94436 1.62462 1.42012 1.01717 1.18797 1.22111 0.90173 0.94631 0.97656 1.21639 1.00649 0.94878 0.97987 1.21432 0.96807 1.01191 0.94249 1.18583 0.93521 0.89785 0.94534 0.98012 1.21396 1.46359 0.96861 0.92827 0.93039 1.25736 0.94882 0.97969 0.99852 1.70028 1.47106 1.09904 1.28352 0.85658 0.78704 0.77442 0.80141 1.19771 1.20937 1.19300 1.21898 0.98051 0.96085 0.87306 1.23694 0.84718 0.87577 0.94204 1.93422 1.83809 1.77040 0.98607 0.93171 0.89423 0.92181 0.89699 0.92144 0.93609 0.90794 0.82209 0.87503 0.68849 0.85265 0.85033 0.96660 0.89296 0.92074 0.92291 0.97132 0.92074 0.92989 0.91779 0.96814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.59 16 2 O -0.43 -8.71 10.70 -148.98 -1.59 -10.30 16 3 C 0.07 0.95 5.94 71.98 0.43 1.38 16 4 C -0.13 -2.29 5.91 30.59 0.18 -2.11 16 5 C 0.12 1.43 5.81 86.38 0.50 1.93 16 6 N -0.49 -9.19 2.74 -531.12 -1.45 -10.64 16 7 C 0.26 4.00 12.65 179.83 2.27 6.27 16 8 N -0.30 -7.42 11.61 -59.43 -0.69 -8.11 16 9 N -0.39 -11.13 2.85 -359.54 -1.02 -12.15 16 10 C 0.30 8.71 6.27 170.80 1.07 9.78 16 11 N -0.53 -19.63 4.87 -908.73 -4.42 -24.06 16 12 C 0.08 3.19 4.01 86.33 0.35 3.54 16 13 C -0.11 -4.90 6.09 30.65 0.19 -4.71 16 14 C -0.10 -5.04 5.02 30.67 0.15 -4.89 16 15 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 16 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 17 C -0.54 -30.09 8.56 25.60 0.22 -29.87 16 18 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 19 C 0.01 0.83 5.30 84.66 0.45 1.27 16 20 N -0.91 -54.02 11.35 21.45 0.24 -53.78 16 21 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 25 C 0.09 4.03 4.19 86.33 0.36 4.39 16 26 C 0.46 13.06 6.68 178.99 1.20 14.26 16 27 S -0.66 -22.67 27.25 -56.49 -1.54 -24.21 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.16 0.09 8.13 -2.39 -0.02 0.07 16 36 H 0.11 1.47 7.81 -2.39 -0.02 1.45 16 37 H 0.30 0.47 8.06 -2.91 -0.02 0.44 16 38 H 0.13 3.62 7.62 -2.39 -0.02 3.61 16 39 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 40 H 0.02 0.64 6.25 -2.39 -0.01 0.63 16 41 H 0.09 3.36 7.40 -2.38 -0.02 3.34 16 42 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.06 3.49 6.15 -2.39 -0.01 3.48 16 46 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 47 H 0.06 2.71 8.12 -2.39 -0.02 2.69 16 48 H 0.01 0.61 7.04 -2.39 -0.02 0.59 16 Total: -1.00 -79.69 392.30 1.07 -78.63 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.93 Total: 12.98 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 8.59 Total: 5.66 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -7.35 Total: -108.74 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -1.59 Total: -10.30 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -22.67 SS G_CDS: -1.54 Total: -24.21 kcal Total: -79.69 1.07 -78.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525720.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.616 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds