Wall clock time and date at job start Sat Apr 11 2020 06:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 O 1.21282 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99978 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99846 * 180.02562 * 6 4 3 8 8 C 1.50704 * 109.47056 * 90.00088 * 7 6 4 9 9 H 1.07998 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99692 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99695 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00292 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46965 * 90.00315 * 12 10 8 14 14 H 1.48501 * 109.47201 * 210.00367 * 12 10 8 15 15 H 1.48496 * 109.47104 * 330.00541 * 12 10 8 16 16 C 1.46497 * 119.99801 * 359.97438 * 6 4 3 17 17 C 1.53005 * 109.46961 * 90.00424 * 16 6 4 18 18 C 1.47204 * 109.46788 * 179.97438 * 17 16 6 19 19 N 6.68959 * 104.77546 * 339.68515 * 2 1 3 20 20 C 1.39828 * 111.00187 * 236.04945 * 2 1 3 21 21 C 1.38405 * 120.18073 * 63.94816 * 20 2 1 22 22 C 1.38740 * 120.57948 * 179.97438 * 21 20 2 23 23 C 1.36630 * 120.59273 * 0.02562 * 22 21 20 24 24 C 1.39785 * 119.89968 * 0.02562 * 23 22 21 25 25 C 1.46476 * 133.97984 * 179.97438 * 24 23 22 26 26 C 1.34269 * 107.02218 * 180.02562 * 25 24 23 27 27 N 1.36752 * 109.90557 * 0.02562 * 26 25 24 28 28 H 0.97003 * 125.08097 * 180.02562 * 27 26 25 29 29 C 1.37847 * 109.84386 * 359.72050 * 27 26 25 30 30 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 31 31 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 33 33 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 34 34 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 35 35 H 1.09002 * 109.47248 * 209.99764 * 7 6 4 36 36 H 1.09000 * 109.47481 * 330.00016 * 7 6 4 37 37 H 0.97000 * 120.00234 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47065 * 210.00008 * 16 6 4 39 39 H 1.09002 * 109.47641 * 330.00367 * 16 6 4 40 40 H 1.09000 * 109.46892 * 299.99690 * 17 16 6 41 41 H 1.08998 * 109.46794 * 60.00269 * 17 16 6 42 42 H 1.08009 * 119.70985 * 0.02562 * 21 20 2 43 43 H 1.08007 * 119.70795 * 180.02562 * 22 21 20 44 44 H 1.07995 * 120.05413 * 179.97438 * 23 22 21 45 45 H 1.07995 * 126.48937 * 0.05975 * 25 24 23 46 46 H 1.07995 * 125.04932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0046 1.4457 2.1407 6 7 2.0178 3.3203 1.5233 7 6 1.6697 3.9769 2.7857 8 6 2.7632 3.7374 3.7948 9 1 3.6304 3.1540 3.5230 10 6 2.6558 4.2621 5.0653 11 7 3.6098 4.0527 5.9460 12 14 1.1554 5.2706 5.5356 13 1 0.1085 4.3730 6.0866 14 1 1.5358 6.2753 6.5609 15 1 0.6291 5.9652 4.3333 16 6 2.7810 4.0470 0.5057 17 6 1.8160 4.7719 -0.4346 18 6 2.5829 5.5026 -1.4567 19 7 3.1751 6.0660 -2.2457 20 6 1.9702 -0.7290 -1.0828 21 6 1.7290 -0.3054 -2.3782 22 6 2.2227 -1.0221 -3.4587 23 6 2.9551 -2.1588 -3.2629 24 6 3.2112 -2.6076 -1.9641 25 6 3.9378 -3.7514 -1.4080 26 6 3.8446 -3.6640 -0.0714 27 7 3.1174 -2.5584 0.2734 28 1 2.9155 -2.2850 1.1819 29 6 2.7199 -1.8868 -0.8628 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.0796 1.3446 -0.1082 34 1 1.5610 1.9274 -0.8310 35 1 1.5574 5.0483 2.6192 36 1 0.7322 3.5675 3.1619 37 1 3.5345 4.4221 6.8397 38 1 3.4316 4.7750 0.9904 39 1 3.3859 3.3434 -0.0664 40 1 1.1654 4.0439 -0.9193 41 1 1.2112 5.4756 0.1374 42 1 1.1521 0.5915 -2.5494 43 1 2.0264 -0.6784 -4.4636 44 1 3.3348 -2.7101 -4.1103 45 1 4.4518 -4.5192 -1.9671 46 1 4.2794 -4.3631 0.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879342602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:29 Heat of formation + Delta-G solvation = 74.769256 kcal Electronic energy + Delta-G solvation = -29138.318513 eV Core-core repulsion = 25222.367069 eV Total energy + Delta-G solvation = -3915.951444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35010 -39.72460 -37.97575 -36.93522 -35.85452 -35.21625 -32.84977 -31.22555 -31.02635 -29.53197 -29.06806 -28.42670 -27.21508 -24.95555 -24.07819 -22.53369 -21.99623 -21.46773 -20.29482 -18.59331 -18.09705 -17.75030 -16.89335 -16.85474 -16.21400 -15.88735 -15.77598 -15.18147 -14.90221 -14.65391 -14.57502 -14.35331 -14.03240 -13.92166 -13.74865 -13.32370 -13.03571 -12.97743 -12.76878 -12.61063 -12.53918 -12.34492 -12.10498 -11.90268 -11.77198 -11.68057 -11.61829 -11.51501 -11.15020 -11.07324 -10.89214 -10.59904 -10.23912 -9.66216 -9.61817 -9.19512 -8.65280 -8.48466 -8.28727 -7.93663 -7.70805 -6.14574 -4.14289 0.97083 1.59100 2.63894 2.65039 2.73258 3.15109 3.19541 3.23471 3.28451 3.30729 3.38275 3.79356 3.82802 4.16008 4.33239 4.67017 4.80856 4.89860 4.94204 4.95925 4.99868 5.10600 5.14323 5.19237 5.29596 5.35105 5.37183 5.48697 5.49749 5.57275 5.69420 5.70782 5.81510 5.94293 5.97445 6.14850 6.34207 6.43824 6.52238 6.58884 6.69282 6.77032 6.84215 6.96317 7.15824 7.41826 7.49320 7.52707 7.54370 8.03628 8.38996 8.80447 8.89956 9.44795 10.98720 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.003379 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.840669 B = 8285.563368 C = 9905.831213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.489 5.489 3 C 0.040 3.960 4 C 0.512 3.488 5 O -0.514 6.514 6 N -0.593 5.593 7 C 0.216 3.784 8 C -0.531 4.531 9 H 0.075 0.925 10 C 0.073 3.927 11 N -0.896 5.896 12 Si 0.875 3.125 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.265 1.265 16 C 0.116 3.884 17 C -0.050 4.050 18 C 0.215 3.785 19 N -0.440 5.440 20 C 0.085 3.915 21 C -0.134 4.134 22 C -0.138 4.138 23 C -0.077 4.077 24 C -0.107 4.107 25 C -0.215 4.215 26 C 0.056 3.944 27 N -0.581 5.581 28 H 0.424 0.576 29 C 0.123 3.877 30 H 0.025 0.975 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.144 0.856 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 -10.764 -17.118 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.210 5.210 3 C -0.090 4.090 4 C 0.298 3.702 5 O -0.389 6.389 6 N -0.325 5.325 7 C 0.096 3.904 8 C -0.570 4.570 9 H 0.093 0.907 10 C -0.129 4.129 11 N -0.534 5.534 12 Si 0.702 3.298 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.190 1.190 16 C -0.010 4.010 17 C -0.092 4.092 18 C -0.103 4.103 19 N -0.118 5.118 20 C -0.011 4.011 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.096 4.096 24 C -0.112 4.112 25 C -0.241 4.241 26 C -0.072 4.072 27 N -0.182 5.182 28 H 0.262 0.738 29 C 0.013 3.987 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.162 0.838 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -3.251 -10.408 -17.008 20.203 hybrid contribution -1.126 0.891 0.419 1.496 sum -4.378 -9.517 -16.589 19.619 Atomic orbital electron populations 1.22616 0.85011 1.02433 1.02030 1.59180 1.09243 1.12487 1.40097 1.22189 1.01900 0.88656 0.96267 1.20152 0.80256 0.81611 0.88167 1.90653 1.39256 1.62857 1.46163 1.47881 1.54473 1.12212 1.17935 1.19712 0.97624 0.92206 0.80844 1.21303 1.05689 1.34291 0.95686 0.90685 1.24858 0.96057 0.95898 0.96119 1.69891 1.33055 1.45238 1.05186 0.86873 0.83602 0.80430 0.78882 1.19921 1.21123 1.18994 1.21344 0.92912 0.97156 0.89621 1.19884 0.97626 0.99234 0.92408 1.29034 0.93850 0.93559 0.93905 1.81223 1.09388 1.09954 1.11190 1.17805 1.00239 0.93871 0.89235 1.21271 1.01625 1.00651 0.91997 1.20459 1.00634 0.96290 0.98384 1.20254 0.98266 0.96239 0.94827 1.19183 1.02586 0.96974 0.92475 1.21619 1.08426 1.00960 0.93070 1.21887 0.97704 0.90984 0.96623 1.41916 1.46018 1.21891 1.08402 0.73769 1.18025 0.99788 0.94535 0.86345 0.95681 0.91679 0.88549 0.88125 0.91949 0.95010 0.94279 0.92508 0.88394 0.90388 0.87691 0.86616 0.86131 0.86219 0.86224 0.83801 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 8.94 60.07 0.54 0.86 16 2 N -0.49 -6.68 4.48 -180.19 -0.81 -7.49 16 3 C 0.04 0.52 3.59 -4.97 -0.02 0.51 16 4 C 0.51 8.88 7.40 -10.98 -0.08 8.80 16 5 O -0.51 -11.04 13.89 5.56 0.08 -10.96 16 6 N -0.59 -10.15 2.46 -175.06 -0.43 -10.57 16 7 C 0.22 4.64 4.23 -5.19 -0.02 4.62 16 8 C -0.53 -14.18 9.94 -34.44 -0.34 -14.52 16 9 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 10 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 12 Si 0.88 20.37 27.47 -169.99 -4.67 15.70 16 13 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.27 -5.66 6.54 56.52 0.37 -5.29 16 16 C 0.12 1.46 5.17 -4.04 -0.02 1.44 16 17 C -0.05 -0.47 6.03 -29.51 -0.18 -0.65 16 18 C 0.21 2.45 15.43 -20.76 -0.32 2.12 16 19 N -0.44 -6.25 18.54 42.15 0.78 -5.46 16 20 C 0.08 1.08 4.69 -83.61 -0.39 0.69 16 21 C -0.13 -1.47 8.70 -39.33 -0.34 -1.82 16 22 C -0.14 -1.39 9.97 -39.98 -0.40 -1.79 16 23 C -0.08 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.11 -1.29 6.37 -105.15 -0.67 -1.96 16 25 C -0.22 -2.21 11.08 -37.66 -0.42 -2.63 16 26 C 0.06 0.54 11.82 -16.76 -0.20 0.34 16 27 N -0.58 -6.79 6.08 -10.54 -0.06 -6.86 16 28 H 0.42 4.83 8.96 -40.82 -0.37 4.46 16 29 C 0.12 1.60 7.20 -83.77 -0.60 0.99 16 30 H 0.02 0.27 7.47 -51.93 -0.39 -0.12 16 31 H 0.06 0.80 8.13 -51.92 -0.42 0.38 16 32 H 0.10 1.44 5.88 -51.93 -0.31 1.14 16 33 H 0.10 1.31 7.32 -51.93 -0.38 0.93 16 34 H 0.06 0.64 6.51 -51.93 -0.34 0.31 16 35 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 36 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 38 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.08 0.85 6.44 -51.93 -0.33 0.52 16 40 H 0.11 0.77 7.22 -51.93 -0.37 0.40 16 41 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.12 1.14 7.14 -52.48 -0.37 0.76 16 43 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 46 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -34.55 387.53 -8.59 -43.14 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -6.13 Total: 4.81 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.96 Total: -2.27 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: 0.25 Total: -56.26 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.70 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.55 -8.59 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879342602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.913 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds