Wall clock time and date at job start Sat Apr 11 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 O 1.21282 * 120.00082 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99978 * 180.02562 * 4 3 2 7 7 C 1.46496 * 119.99846 * 180.02562 * 6 4 3 8 8 C 1.50704 * 109.47056 * 90.00088 * 7 6 4 9 9 H 1.07998 * 120.00154 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99692 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99695 * 179.97438 * 10 8 7 12 12 Si 1.86802 * 120.00292 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46965 * 90.00315 * 12 10 8 14 14 H 1.48501 * 109.47201 * 210.00367 * 12 10 8 15 15 H 1.48496 * 109.47104 * 330.00541 * 12 10 8 16 16 C 1.46497 * 119.99801 * 359.97438 * 6 4 3 17 17 C 1.53005 * 109.46961 * 90.00424 * 16 6 4 18 18 C 1.47204 * 109.46788 * 179.97438 * 17 16 6 19 19 N 6.68959 * 104.77546 * 339.68515 * 2 1 3 20 20 C 1.39828 * 111.00187 * 236.04945 * 2 1 3 21 21 C 1.38405 * 120.18073 * 63.94816 * 20 2 1 22 22 C 1.38740 * 120.57948 * 179.97438 * 21 20 2 23 23 C 1.36630 * 120.59273 * 0.02562 * 22 21 20 24 24 C 1.39785 * 119.89968 * 0.02562 * 23 22 21 25 25 C 1.46476 * 133.97984 * 179.97438 * 24 23 22 26 26 C 1.34269 * 107.02218 * 180.02562 * 25 24 23 27 27 N 1.36752 * 109.90557 * 0.02562 * 26 25 24 28 28 H 0.97003 * 125.08097 * 180.02562 * 27 26 25 29 29 C 1.37847 * 109.84386 * 359.72050 * 27 26 25 30 30 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 31 31 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 33 33 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 34 34 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 35 35 H 1.09002 * 109.47248 * 209.99764 * 7 6 4 36 36 H 1.09000 * 109.47481 * 330.00016 * 7 6 4 37 37 H 0.97000 * 120.00234 * 179.97438 * 11 10 8 38 38 H 1.09000 * 109.47065 * 210.00008 * 16 6 4 39 39 H 1.09002 * 109.47641 * 330.00367 * 16 6 4 40 40 H 1.09000 * 109.46892 * 299.99690 * 17 16 6 41 41 H 1.08998 * 109.46794 * 60.00269 * 17 16 6 42 42 H 1.08009 * 119.70985 * 0.02562 * 21 20 2 43 43 H 1.08007 * 119.70795 * 180.02562 * 22 21 20 44 44 H 1.07995 * 120.05413 * 179.97438 * 23 22 21 45 45 H 1.07995 * 126.48937 * 0.05975 * 25 24 23 46 46 H 1.07995 * 125.04932 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 8 1.0046 1.4457 2.1407 6 7 2.0178 3.3203 1.5233 7 6 1.6697 3.9769 2.7857 8 6 2.7632 3.7374 3.7948 9 1 3.6304 3.1540 3.5230 10 6 2.6558 4.2621 5.0653 11 7 3.6098 4.0527 5.9460 12 14 1.1554 5.2706 5.5356 13 1 0.1085 4.3730 6.0866 14 1 1.5358 6.2753 6.5609 15 1 0.6291 5.9652 4.3333 16 6 2.7810 4.0470 0.5057 17 6 1.8160 4.7719 -0.4346 18 6 2.5829 5.5026 -1.4567 19 7 3.1751 6.0660 -2.2457 20 6 1.9702 -0.7290 -1.0828 21 6 1.7290 -0.3054 -2.3782 22 6 2.2227 -1.0221 -3.4587 23 6 2.9551 -2.1588 -3.2629 24 6 3.2112 -2.6076 -1.9641 25 6 3.9378 -3.7514 -1.4080 26 6 3.8446 -3.6640 -0.0714 27 7 3.1174 -2.5584 0.2734 28 1 2.9155 -2.2850 1.1819 29 6 2.7199 -1.8868 -0.8628 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.0796 1.3446 -0.1082 34 1 1.5610 1.9274 -0.8310 35 1 1.5574 5.0483 2.6192 36 1 0.7322 3.5675 3.1619 37 1 3.5345 4.4221 6.8397 38 1 3.4316 4.7750 0.9904 39 1 3.3859 3.3434 -0.0664 40 1 1.1654 4.0439 -0.9193 41 1 1.2112 5.4756 0.1374 42 1 1.1521 0.5915 -2.5494 43 1 2.0264 -0.6784 -4.4636 44 1 3.3348 -2.7101 -4.1103 45 1 4.4518 -4.5192 -1.9671 46 1 4.2794 -4.3631 0.6276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879342602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:28 Heat of formation + Delta-G solvation = 52.304776 kcal Electronic energy + Delta-G solvation = -29139.292646 eV Core-core repulsion = 25222.367069 eV Total energy + Delta-G solvation = -3916.925577 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17207 -40.97827 -38.95547 -37.97000 -36.86759 -36.40966 -34.79872 -32.40446 -31.99233 -30.66304 -30.09621 -29.27819 -28.61425 -25.99848 -25.23878 -24.08099 -22.81286 -22.41919 -21.14290 -19.88321 -19.16902 -18.98490 -18.45424 -17.93059 -17.24841 -17.07484 -16.66604 -16.38305 -15.98135 -15.82715 -15.71900 -15.36280 -15.21305 -14.95678 -14.75118 -14.51636 -14.26684 -14.11996 -13.79550 -13.72869 -13.57565 -13.52177 -13.37660 -13.09793 -12.85951 -12.74607 -12.64194 -12.57484 -12.39284 -12.37026 -11.98891 -11.92595 -11.85732 -11.67642 -10.76767 -10.60867 -10.45602 -9.53564 -9.35202 -9.10485 -8.51313 -8.27396 -6.32031 0.16251 0.77624 1.38953 1.42996 1.50324 1.67789 1.82128 1.85260 1.88774 2.18707 2.36853 2.40870 2.86786 2.97599 3.08145 3.17149 3.71487 3.94140 3.99726 4.07687 4.17410 4.20103 4.20927 4.27553 4.40729 4.46319 4.53376 4.56394 4.69145 4.77773 4.80786 4.88430 4.91562 5.01218 5.06143 5.08691 5.12532 5.17725 5.53213 5.54571 5.62764 5.66510 5.80478 5.83309 5.92254 6.14398 6.30132 6.53988 6.61396 6.70166 6.71699 6.71961 7.28543 7.47873 8.89695 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010584 B = 0.003379 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.840669 B = 8285.563368 C = 9905.831213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.507 5.507 3 C 0.052 3.948 4 C 0.508 3.492 5 O -0.563 6.563 6 N -0.595 5.595 7 C 0.225 3.775 8 C -0.532 4.532 9 H 0.026 0.974 10 C 0.008 3.992 11 N -0.951 5.951 12 Si 0.945 3.055 13 H -0.278 1.278 14 H -0.285 1.285 15 H -0.225 1.225 16 C 0.111 3.889 17 C -0.036 4.036 18 C 0.244 3.756 19 N -0.490 5.490 20 C 0.066 3.934 21 C -0.132 4.132 22 C -0.139 4.139 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.226 4.226 26 C 0.052 3.948 27 N -0.592 5.592 28 H 0.420 0.580 29 C 0.092 3.908 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.138 0.862 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.165 0.835 46 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 -10.172 -19.926 23.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.229 5.229 3 C -0.077 4.077 4 C 0.296 3.704 5 O -0.442 6.442 6 N -0.326 5.326 7 C 0.103 3.897 8 C -0.571 4.571 9 H 0.045 0.955 10 C -0.190 4.190 11 N -0.591 5.591 12 Si 0.768 3.232 13 H -0.204 1.204 14 H -0.211 1.211 15 H -0.148 1.148 16 C -0.014 4.014 17 C -0.077 4.077 18 C -0.074 4.074 19 N -0.167 5.167 20 C -0.029 4.029 21 C -0.153 4.153 22 C -0.159 4.159 23 C -0.101 4.101 24 C -0.133 4.133 25 C -0.251 4.251 26 C -0.075 4.075 27 N -0.193 5.193 28 H 0.257 0.743 29 C -0.017 4.017 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.159 0.841 45 H 0.183 0.817 46 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.765 -9.807 -19.891 22.684 hybrid contribution -0.544 0.573 1.278 1.503 sum -5.309 -9.234 -18.613 21.445 Atomic orbital electron populations 1.22489 0.84815 1.02208 1.01849 1.59021 1.09618 1.12749 1.41467 1.22111 1.02120 0.88825 0.94675 1.20920 0.79092 0.81261 0.89140 1.90636 1.41477 1.63919 1.48122 1.47828 1.54749 1.12609 1.17405 1.19392 0.94849 0.93913 0.81594 1.21629 1.05542 1.32711 0.97223 0.95530 1.25870 0.99478 0.97522 0.96086 1.70069 1.35855 1.47400 1.05802 0.85759 0.78950 0.78649 0.79853 1.20409 1.21093 1.14786 1.21521 0.93368 0.97295 0.89212 1.19852 0.96692 0.99754 0.91409 1.29186 0.92699 0.92384 0.93098 1.81269 1.10744 1.11695 1.13040 1.17898 1.01288 0.94163 0.89595 1.21508 1.01263 1.01199 0.91362 1.20793 0.99817 0.95832 0.99416 1.20602 0.97990 0.96583 0.94918 1.19590 1.03057 0.97604 0.93001 1.21974 1.08522 1.01137 0.93444 1.22459 0.96968 0.90681 0.97347 1.42070 1.46551 1.22559 1.08109 0.74257 1.18418 1.00794 0.95378 0.87118 0.93228 0.91998 0.91069 0.87958 0.88037 0.92168 0.95508 0.92580 0.89729 0.88573 0.84464 0.85100 0.84223 0.83582 0.84131 0.81701 0.78394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 8.94 127.69 1.14 1.95 16 2 N -0.51 -13.43 4.48 -723.98 -3.24 -16.67 16 3 C 0.05 1.28 3.59 85.56 0.31 1.58 16 4 C 0.51 17.27 7.40 87.66 0.65 17.92 16 5 O -0.56 -24.65 13.89 -3.04 -0.04 -24.69 16 6 N -0.59 -19.60 2.46 -826.15 -2.03 -21.62 16 7 C 0.22 9.41 4.23 85.64 0.36 9.78 16 8 C -0.53 -29.16 9.94 25.60 0.25 -28.90 16 9 H 0.03 1.66 8.06 -2.91 -0.02 1.63 16 10 C 0.01 0.44 5.47 84.66 0.46 0.90 16 11 N -0.95 -58.78 13.96 21.45 0.30 -58.48 16 12 Si 0.94 41.78 27.47 68.60 1.88 43.67 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 15 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 16 C 0.11 2.53 5.17 86.38 0.45 2.98 16 17 C -0.04 -0.53 6.03 28.79 0.17 -0.36 16 18 C 0.24 4.79 15.43 89.44 1.38 6.17 16 19 N -0.49 -12.88 18.54 20.01 0.37 -12.51 16 20 C 0.07 1.61 4.69 38.25 0.18 1.79 16 21 C -0.13 -2.53 8.70 22.43 0.20 -2.34 16 22 C -0.14 -2.38 9.97 22.01 0.22 -2.16 16 23 C -0.08 -1.56 10.05 22.27 0.22 -1.34 16 24 C -0.13 -2.92 6.37 -20.21 -0.13 -3.05 16 25 C -0.23 -4.38 11.08 23.51 0.26 -4.12 16 26 C 0.05 0.97 11.82 83.02 0.98 1.96 16 27 N -0.59 -14.02 6.08 -187.25 -1.14 -15.16 16 28 H 0.42 10.08 8.96 -92.71 -0.83 9.25 16 29 C 0.09 2.37 7.20 39.09 0.28 2.65 16 30 H 0.05 0.94 7.47 -2.39 -0.02 0.92 16 31 H 0.06 1.52 8.13 -2.38 -0.02 1.50 16 32 H 0.07 2.14 5.88 -2.39 -0.01 2.12 16 33 H 0.10 2.50 7.32 -2.39 -0.02 2.48 16 34 H 0.10 1.66 6.51 -2.38 -0.02 1.65 16 35 H 0.06 2.21 7.13 -2.39 -0.02 2.19 16 36 H 0.03 1.21 6.85 -2.39 -0.02 1.19 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.08 2.19 8.07 -2.39 -0.02 2.17 16 39 H 0.10 1.86 6.44 -2.39 -0.02 1.84 16 40 H 0.14 1.25 7.22 -2.39 -0.02 1.24 16 41 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.14 2.04 7.14 -2.91 -0.02 2.02 16 43 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 45 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -80.51 387.53 3.63 -76.88 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.14 Total: 23.18 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 7.39 Total: 5.40 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -5.74 Total: -124.44 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -0.04 Total: -24.69 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.67 kcal Total: -80.51 3.63 -76.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879342602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.187 kcal (2) G-P(sol) polarization free energy of solvation -80.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds