Wall clock time and date at job start Sat Apr 11 2020 06:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48501 * 109.47043 * 272.93616 * 3 2 1 5 5 H 1.48498 * 109.47119 * 32.94366 * 3 2 1 6 6 H 1.48500 * 109.46634 * 152.94113 * 3 2 1 7 7 C 1.38816 * 119.99210 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00509 * 339.34677 * 7 2 1 9 9 N 1.36936 * 119.99365 * 159.34751 * 7 2 1 10 10 C 1.46928 * 120.63103 * 332.63057 * 9 7 2 11 11 C 1.53195 * 108.77413 * 233.58370 * 10 9 7 12 12 C 1.53035 * 109.31469 * 305.36952 * 11 10 9 13 13 N 1.46901 * 109.45986 * 181.38514 * 12 11 10 14 14 C 1.46904 * 111.00015 * 154.99751 * 13 12 11 15 15 C 1.50701 * 109.47128 * 179.97438 * 14 13 12 16 16 C 1.38169 * 120.02920 * 260.02517 * 15 14 13 17 17 C 1.38244 * 120.05736 * 179.97438 * 16 15 14 18 18 C 1.38291 * 120.11022 * 359.97438 * 17 16 15 19 19 C 1.38122 * 120.05677 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.03093 * 79.99940 * 15 14 13 21 21 O 1.35901 * 120.05167 * 0.02562 * 20 15 14 22 22 C 1.42898 * 117.00059 * 180.02562 * 21 20 15 23 23 C 1.53002 * 109.47360 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.46933 * 300.00043 * 23 22 21 25 25 F 1.39907 * 109.47104 * 59.99607 * 23 22 21 26 26 C 1.53036 * 109.54081 * 61.36366 * 12 11 10 27 27 C 1.46930 * 120.62972 * 152.61066 * 9 7 2 28 28 H 0.97006 * 119.99645 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58851 * 113.80297 * 10 9 7 30 30 H 1.08994 * 109.70745 * 353.44242 * 10 9 7 31 31 H 1.08999 * 109.49637 * 185.41282 * 11 10 9 32 32 H 1.09002 * 109.49604 * 65.32160 * 11 10 9 33 33 H 1.09001 * 109.45874 * 301.35212 * 12 11 10 34 34 H 1.00897 * 111.00059 * 31.04731 * 13 12 11 35 35 H 1.09008 * 109.47157 * 60.00226 * 14 13 12 36 36 H 1.08994 * 109.47412 * 300.00140 * 14 13 12 37 37 H 1.08004 * 119.96735 * 359.97438 * 16 15 14 38 38 H 1.07999 * 119.94462 * 180.02562 * 17 16 15 39 39 H 1.07997 * 119.96819 * 180.28706 * 18 17 16 40 40 H 1.07996 * 120.02787 * 180.02562 * 19 18 17 41 41 H 1.09000 * 109.46806 * 299.99551 * 22 21 20 42 42 H 1.08991 * 109.47465 * 59.99795 * 22 21 20 43 43 H 1.08993 * 109.47435 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.49892 * 58.58776 * 26 12 11 45 45 H 1.09003 * 109.49832 * 178.68183 * 26 12 11 46 46 H 1.09009 * 109.58485 * 246.20016 * 27 9 7 47 47 H 1.08995 * 109.58739 * 6.47659 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4356 2.0822 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5775 1.4228 0.6369 7 6 2.0101 -1.2023 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3135 -1.2406 -0.4177 10 6 3.8172 -0.2596 -1.3887 11 6 4.4622 -1.0100 -2.5582 12 6 5.5288 -1.9662 -2.0196 13 7 6.1724 -2.6632 -3.1412 14 6 7.5254 -3.1064 -2.7789 15 6 8.1523 -3.8161 -3.9512 16 6 8.1735 -5.1970 -3.9927 17 6 8.7479 -5.8487 -5.0681 18 6 9.3022 -5.1207 -6.1050 19 6 9.2835 -3.7401 -6.0683 20 6 8.7080 -3.0837 -4.9898 21 8 8.6884 -1.7254 -4.9513 22 6 9.2786 -1.0365 -6.0555 23 6 9.1618 0.4732 -5.8362 24 9 7.8120 0.8264 -5.7337 25 9 9.8269 0.8260 -4.6570 26 6 4.8750 -2.9910 -1.0900 27 6 4.2349 -2.2632 0.0962 28 1 -0.4850 0.8401 -0.0004 29 1 4.5597 0.3795 -0.9107 30 1 2.9924 0.3505 -1.7564 31 1 4.9247 -0.2949 -3.2385 32 1 3.6996 -1.5784 -3.0907 33 1 6.2779 -1.3999 -1.4661 34 1 6.1911 -2.0818 -3.9655 35 1 7.4694 -3.7877 -1.9298 36 1 8.1316 -2.2411 -2.5110 37 1 7.7408 -5.7678 -3.1842 38 1 8.7631 -6.9282 -5.0988 39 1 9.7462 -5.6322 -6.9462 40 1 9.7161 -3.1721 -6.8785 41 1 10.3301 -1.3121 -6.1355 42 1 8.7601 -1.3110 -6.9741 43 1 9.6123 0.9986 -6.6781 44 1 4.1086 -3.5408 -1.6362 45 1 5.6315 -3.6860 -0.7252 46 1 5.0114 -1.7875 0.6953 47 1 3.6843 -2.9754 0.7108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885975080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:32 Heat of formation + Delta-G solvation = -87.899978 kcal Electronic energy + Delta-G solvation = -30212.546118 eV Core-core repulsion = 25838.851621 eV Total energy + Delta-G solvation = -4373.694498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.28141 -47.31268 -40.61155 -38.27172 -37.74983 -35.36461 -32.77461 -31.50609 -31.11101 -30.28430 -29.93369 -29.04783 -25.60961 -24.33428 -23.95936 -22.63716 -22.11291 -21.43044 -21.23520 -19.23846 -18.84332 -17.88033 -17.35121 -17.23840 -16.76935 -16.14083 -15.98643 -15.70008 -15.35967 -14.84757 -14.64545 -14.46460 -14.13708 -14.05589 -13.78819 -13.70108 -13.65377 -13.46811 -13.02594 -12.91247 -12.69388 -12.54354 -12.31850 -12.09242 -11.83134 -11.72228 -11.55265 -11.50387 -11.47190 -10.93929 -10.82000 -10.67829 -10.30989 -10.09708 -9.82602 -9.61940 -9.34856 -9.12772 -8.56901 -8.46481 -8.11608 -6.88533 -5.87473 -3.21987 1.06234 1.16512 2.48841 3.30132 3.38782 3.47095 3.54070 3.58205 3.67275 3.93333 4.33216 4.40013 4.51674 4.56536 4.60553 4.65900 4.82344 4.83456 5.05491 5.06634 5.09467 5.33966 5.35099 5.45579 5.49938 5.58035 5.65574 5.84708 5.86076 6.00559 6.01534 6.17944 6.20951 6.30763 6.33430 6.37564 6.46771 6.49947 6.54864 6.71614 6.75831 6.87499 6.97972 7.09286 7.37921 7.64619 8.05253 8.41019 9.02972 9.80612 10.19641 11.28797 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.003188 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.493388 B = 8780.717226 C =10550.004301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.256 4.256 8 H 0.085 0.915 9 N -0.606 5.606 10 C 0.130 3.870 11 C -0.133 4.133 12 C 0.097 3.903 13 N -0.679 5.679 14 C 0.105 3.895 15 C -0.099 4.099 16 C -0.063 4.063 17 C -0.154 4.154 18 C -0.084 4.084 19 C -0.210 4.210 20 C 0.129 3.871 21 O -0.301 6.301 22 C 0.006 3.994 23 C 0.272 3.728 24 F -0.194 7.194 25 F -0.197 7.197 26 C -0.118 4.118 27 C 0.148 3.852 28 H 0.262 0.738 29 H 0.022 0.978 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.339 0.661 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.068 0.932 45 H 0.050 0.950 46 H 0.018 0.982 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.088 -6.581 -16.345 30.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.177 4.177 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.384 4.384 8 H 0.103 0.897 9 N -0.329 5.329 10 C 0.004 3.996 11 C -0.173 4.173 12 C -0.012 4.012 13 N -0.310 5.310 14 C -0.024 4.024 15 C -0.100 4.100 16 C -0.081 4.081 17 C -0.173 4.173 18 C -0.103 4.103 19 C -0.229 4.229 20 C 0.084 3.916 21 O -0.214 6.214 22 C -0.070 4.070 23 C 0.219 3.781 24 F -0.175 7.175 25 F -0.179 7.179 26 C -0.158 4.158 27 C 0.021 3.979 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.158 0.842 35 H 0.098 0.902 36 H 0.057 0.943 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.147 0.853 44 H 0.087 0.913 45 H 0.068 0.932 46 H 0.036 0.964 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.529 -6.940 -15.973 30.082 hybrid contribution 1.041 1.852 -0.321 2.149 sum 25.570 -5.088 -16.293 30.744 Atomic orbital electron populations 1.69847 1.05703 1.26424 1.53398 1.25273 0.95221 0.97522 0.99680 0.86953 0.80017 0.84756 0.76994 1.21655 1.23230 1.19641 1.18944 0.85040 0.94723 1.39711 0.89700 1.44363 1.08660 1.33443 1.46484 1.21284 0.97086 0.91984 0.89294 1.22200 0.98147 0.97942 0.99009 1.21441 0.94841 0.93794 0.91156 1.60694 1.17220 1.45893 1.07195 1.20742 0.89217 0.98132 0.94300 1.19270 1.01505 0.93230 0.96035 1.20959 0.96412 0.92577 0.98176 1.21089 1.01213 1.00092 0.94868 1.20899 0.98047 0.93069 0.98267 1.21138 1.06728 0.95916 0.99080 1.18836 0.96569 0.81464 0.94717 1.86148 1.75839 1.16540 1.42880 1.24003 1.00782 0.90891 0.91357 1.22016 0.76342 0.93123 0.86660 1.93068 1.34540 1.93104 1.96765 1.93041 1.80198 1.93160 1.51468 1.22000 0.99261 0.97282 0.97226 1.20948 0.92256 0.91314 0.93337 0.92870 0.95994 0.90889 0.93106 0.90915 0.94581 0.84231 0.90231 0.94272 0.84991 0.85794 0.85894 0.85759 0.89030 0.88843 0.85292 0.91312 0.93172 0.96357 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.68 13.97 55.49 0.78 -27.90 16 2 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 3 Si 0.88 23.25 24.35 -169.99 -4.14 19.11 16 4 H -0.29 -7.37 6.62 56.52 0.37 -6.99 16 5 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 6 H -0.27 -7.06 6.64 56.52 0.38 -6.69 16 7 C -0.26 -7.41 10.04 -15.06 -0.15 -7.56 16 8 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 9 N -0.61 -15.10 2.77 -172.32 -0.48 -15.58 16 10 C 0.13 3.01 4.20 -3.71 -0.02 2.99 16 11 C -0.13 -2.58 5.36 -26.61 -0.14 -2.72 16 12 C 0.10 1.67 2.46 -67.68 -0.17 1.50 16 13 N -0.68 -10.27 6.30 -107.95 -0.68 -10.95 16 14 C 0.10 1.38 5.27 -4.97 -0.03 1.36 16 15 C -0.10 -1.17 5.41 -104.47 -0.56 -1.73 16 16 C -0.06 -0.64 9.66 -39.60 -0.38 -1.02 16 17 C -0.15 -1.35 10.04 -39.56 -0.40 -1.74 16 18 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 19 C -0.21 -1.81 9.04 -39.43 -0.36 -2.16 16 20 C 0.13 1.41 6.66 -39.22 -0.26 1.15 16 21 O -0.30 -3.30 9.21 -19.43 -0.18 -3.48 16 22 C 0.01 0.04 4.96 37.16 0.18 0.23 16 23 C 0.27 1.94 5.63 37.16 0.21 2.15 16 24 F -0.19 -2.12 17.28 2.25 0.04 -2.09 16 25 F -0.20 -2.05 17.28 2.25 0.04 -2.01 16 26 C -0.12 -2.10 5.59 -26.62 -0.15 -2.25 16 27 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 28 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 29 H 0.02 0.51 7.08 -51.93 -0.37 0.14 16 30 H 0.07 1.84 4.50 -51.93 -0.23 1.61 16 31 H 0.05 0.90 8.10 -51.93 -0.42 0.48 16 32 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 33 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16 34 H 0.34 5.20 8.27 -39.29 -0.33 4.87 16 35 H 0.08 1.00 7.27 -51.92 -0.38 0.62 16 36 H 0.04 0.55 7.77 -51.93 -0.40 0.15 16 37 H 0.13 1.20 8.04 -52.48 -0.42 0.78 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.12 0.73 6.30 -52.49 -0.33 0.40 16 41 H 0.09 0.39 7.66 -51.93 -0.40 0.00 16 42 H 0.09 0.44 7.66 -51.93 -0.40 0.04 16 43 H 0.13 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.78 7.42 -51.93 -0.39 0.39 16 46 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -34.46 378.47 -8.68 -43.14 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.03 Total: 1.36 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -2.73 Total: -7.31 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.38 Total: -54.42 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.18 Total: -3.48 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.08 Total: -4.10 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.14 Total: 19.11 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.46 -8.68 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885975080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.760 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds