Wall clock time and date at job start Sat Apr 11 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00179 * 2 1 4 4 H 1.48501 * 109.47043 * 272.93616 * 3 2 1 5 5 H 1.48498 * 109.47119 * 32.94366 * 3 2 1 6 6 H 1.48500 * 109.46634 * 152.94113 * 3 2 1 7 7 C 1.38816 * 119.99210 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00509 * 339.34677 * 7 2 1 9 9 N 1.36936 * 119.99365 * 159.34751 * 7 2 1 10 10 C 1.46928 * 120.63103 * 332.63057 * 9 7 2 11 11 C 1.53195 * 108.77413 * 233.58370 * 10 9 7 12 12 C 1.53035 * 109.31469 * 305.36952 * 11 10 9 13 13 N 1.46901 * 109.45986 * 181.38514 * 12 11 10 14 14 C 1.46904 * 111.00015 * 154.99751 * 13 12 11 15 15 C 1.50701 * 109.47128 * 179.97438 * 14 13 12 16 16 C 1.38169 * 120.02920 * 260.02517 * 15 14 13 17 17 C 1.38244 * 120.05736 * 179.97438 * 16 15 14 18 18 C 1.38291 * 120.11022 * 359.97438 * 17 16 15 19 19 C 1.38122 * 120.05677 * 0.02562 * 18 17 16 20 20 C 1.38711 * 120.03093 * 79.99940 * 15 14 13 21 21 O 1.35901 * 120.05167 * 0.02562 * 20 15 14 22 22 C 1.42898 * 117.00059 * 180.02562 * 21 20 15 23 23 C 1.53002 * 109.47360 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.46933 * 300.00043 * 23 22 21 25 25 F 1.39907 * 109.47104 * 59.99607 * 23 22 21 26 26 C 1.53036 * 109.54081 * 61.36366 * 12 11 10 27 27 C 1.46930 * 120.62972 * 152.61066 * 9 7 2 28 28 H 0.97006 * 119.99645 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.58851 * 113.80297 * 10 9 7 30 30 H 1.08994 * 109.70745 * 353.44242 * 10 9 7 31 31 H 1.08999 * 109.49637 * 185.41282 * 11 10 9 32 32 H 1.09002 * 109.49604 * 65.32160 * 11 10 9 33 33 H 1.09001 * 109.45874 * 301.35212 * 12 11 10 34 34 H 1.00897 * 111.00059 * 31.04731 * 13 12 11 35 35 H 1.09008 * 109.47157 * 60.00226 * 14 13 12 36 36 H 1.08994 * 109.47412 * 300.00140 * 14 13 12 37 37 H 1.08004 * 119.96735 * 359.97438 * 16 15 14 38 38 H 1.07999 * 119.94462 * 180.02562 * 17 16 15 39 39 H 1.07997 * 119.96819 * 180.28706 * 18 17 16 40 40 H 1.07996 * 120.02787 * 180.02562 * 19 18 17 41 41 H 1.09000 * 109.46806 * 299.99551 * 22 21 20 42 42 H 1.08991 * 109.47465 * 59.99795 * 22 21 20 43 43 H 1.08993 * 109.47435 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.49892 * 58.58776 * 26 12 11 45 45 H 1.09003 * 109.49832 * 178.68183 * 26 12 11 46 46 H 1.09009 * 109.58485 * 246.20016 * 27 9 7 47 47 H 1.08995 * 109.58739 * 6.47659 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4356 2.0822 -1.3982 5 1 1.4803 2.6338 0.7614 6 1 3.5775 1.4228 0.6369 7 6 2.0101 -1.2023 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3135 -1.2406 -0.4177 10 6 3.8172 -0.2596 -1.3887 11 6 4.4622 -1.0100 -2.5582 12 6 5.5288 -1.9662 -2.0196 13 7 6.1724 -2.6632 -3.1412 14 6 7.5254 -3.1064 -2.7789 15 6 8.1523 -3.8161 -3.9512 16 6 8.1735 -5.1970 -3.9927 17 6 8.7479 -5.8487 -5.0681 18 6 9.3022 -5.1207 -6.1050 19 6 9.2835 -3.7401 -6.0683 20 6 8.7080 -3.0837 -4.9898 21 8 8.6884 -1.7254 -4.9513 22 6 9.2786 -1.0365 -6.0555 23 6 9.1618 0.4732 -5.8362 24 9 7.8120 0.8264 -5.7337 25 9 9.8269 0.8260 -4.6570 26 6 4.8750 -2.9910 -1.0900 27 6 4.2349 -2.2632 0.0962 28 1 -0.4850 0.8401 -0.0004 29 1 4.5597 0.3795 -0.9107 30 1 2.9924 0.3505 -1.7564 31 1 4.9247 -0.2949 -3.2385 32 1 3.6996 -1.5784 -3.0907 33 1 6.2779 -1.3999 -1.4661 34 1 6.1911 -2.0818 -3.9655 35 1 7.4694 -3.7877 -1.9298 36 1 8.1316 -2.2411 -2.5110 37 1 7.7408 -5.7678 -3.1842 38 1 8.7631 -6.9282 -5.0988 39 1 9.7462 -5.6322 -6.9462 40 1 9.7161 -3.1721 -6.8785 41 1 10.3301 -1.3121 -6.1355 42 1 8.7601 -1.3110 -6.9741 43 1 9.6123 0.9986 -6.6781 44 1 4.1086 -3.5408 -1.6362 45 1 5.6315 -3.6860 -0.7252 46 1 5.0114 -1.7875 0.6953 47 1 3.6843 -2.9754 0.7108 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885975080.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:31 Heat of formation + Delta-G solvation = -110.707751 kcal Electronic energy + Delta-G solvation = -30213.535138 eV Core-core repulsion = 25838.851621 eV Total energy + Delta-G solvation = -4374.683517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92487 -47.98994 -41.29540 -39.79169 -38.48659 -36.81340 -34.41362 -32.99349 -31.96843 -31.72667 -31.01676 -30.05314 -27.02141 -25.58314 -24.90570 -24.21089 -23.13444 -22.68489 -22.14156 -20.87394 -19.46896 -18.82382 -18.49182 -17.94004 -17.85305 -17.37193 -17.00650 -16.61547 -16.38837 -16.02376 -15.91370 -15.75683 -15.41870 -15.29631 -15.06357 -14.85551 -14.44959 -14.35847 -14.35352 -14.28232 -13.92892 -13.70074 -13.38506 -13.35379 -13.26538 -13.20196 -12.59050 -12.46053 -12.35992 -12.21336 -12.10393 -12.05525 -11.94936 -11.69823 -11.63491 -11.35304 -11.22287 -10.72323 -9.85069 -9.39398 -9.11352 -8.95580 -8.17926 -5.49146 0.37531 0.49512 1.27876 1.38264 1.47997 1.95618 2.40081 2.75274 2.81931 3.03241 3.25982 3.28803 3.41261 3.48077 3.78300 3.82383 3.89837 3.96414 4.01180 4.13162 4.17846 4.28909 4.36248 4.37514 4.41436 4.44690 4.50447 4.57144 4.65435 4.68089 4.78562 4.82002 4.90238 4.94410 5.03459 5.08860 5.15011 5.23097 5.35351 5.50567 5.54109 5.64577 5.85319 5.85880 6.08205 6.12363 6.35400 6.42262 6.90183 7.60966 8.02592 9.02180 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.012211 B = 0.003188 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.493388 B = 8780.717226 C =10550.004301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.307 1.307 6 H -0.264 1.264 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.620 5.620 10 C 0.126 3.874 11 C -0.123 4.123 12 C 0.105 3.895 13 N -0.676 5.676 14 C 0.111 3.889 15 C -0.127 4.127 16 C -0.074 4.074 17 C -0.160 4.160 18 C -0.083 4.083 19 C -0.210 4.210 20 C 0.117 3.883 21 O -0.329 6.329 22 C -0.001 4.001 23 C 0.260 3.740 24 F -0.220 7.220 25 F -0.220 7.220 26 C -0.105 4.105 27 C 0.143 3.857 28 H 0.262 0.738 29 H 0.029 0.971 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.037 0.963 34 H 0.339 0.661 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.183 0.817 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.417 -7.012 -18.543 34.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.229 4.229 3 Si 0.774 3.226 4 H -0.203 1.203 5 H -0.236 1.236 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.344 5.344 10 C 0.000 4.000 11 C -0.163 4.163 12 C -0.004 4.004 13 N -0.307 5.307 14 C -0.017 4.017 15 C -0.129 4.129 16 C -0.093 4.093 17 C -0.178 4.178 18 C -0.101 4.101 19 C -0.229 4.229 20 C 0.072 3.928 21 O -0.244 6.244 22 C -0.077 4.077 23 C 0.207 3.793 24 F -0.202 7.202 25 F -0.202 7.202 26 C -0.145 4.145 27 C 0.018 3.982 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.157 0.843 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.200 0.800 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 27.912 -7.388 -18.188 34.125 hybrid contribution 0.070 1.871 0.299 1.897 sum 27.982 -5.517 -17.889 33.667 Atomic orbital electron populations 1.69968 1.07302 1.27189 1.55814 1.25877 0.95838 1.00808 1.00368 0.85927 0.78706 0.80470 0.77488 1.20312 1.23621 1.18860 1.18898 0.86777 0.93631 1.38452 0.92861 1.44501 1.07943 1.34677 1.47328 1.21307 0.96524 0.91982 0.90173 1.22036 0.98291 0.98311 0.97626 1.21253 0.94230 0.93244 0.91709 1.60649 1.18670 1.45110 1.06243 1.20678 0.87803 0.97775 0.95438 1.19258 1.03318 0.93939 0.96338 1.21113 0.96884 0.92212 0.99065 1.21391 1.00675 1.01289 0.94483 1.21319 0.96970 0.93082 0.98694 1.21486 1.05940 0.96433 0.99021 1.19004 0.96948 0.81676 0.95196 1.86103 1.76559 1.16781 1.44933 1.24341 1.02393 0.89976 0.90969 1.22815 0.75035 0.94304 0.87138 1.93007 1.36847 1.93410 1.96899 1.92988 1.80522 1.93428 1.53236 1.21830 0.99309 0.97352 0.95970 1.21131 0.91861 0.90548 0.94676 0.92912 0.95278 0.93163 0.91238 0.92331 0.94548 0.84276 0.89899 0.95500 0.84658 0.83797 0.83009 0.82912 0.86474 0.86740 0.80026 0.92948 0.90302 0.94963 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.06 13.97 21.65 0.30 -61.76 16 2 C -0.03 -2.08 5.23 84.86 0.44 -1.64 16 3 Si 0.95 48.74 24.35 68.60 1.67 50.42 16 4 H -0.28 -13.57 6.62 99.48 0.66 -12.91 16 5 H -0.31 -15.91 7.11 99.48 0.71 -15.21 16 6 H -0.26 -13.15 6.64 99.48 0.66 -12.49 16 7 C -0.25 -14.74 10.04 84.03 0.84 -13.89 16 8 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 9 N -0.62 -30.98 2.77 -699.09 -1.94 -32.92 16 10 C 0.13 5.74 4.20 86.36 0.36 6.11 16 11 C -0.12 -4.67 5.36 30.67 0.16 -4.50 16 12 C 0.11 3.51 2.46 44.94 0.11 3.62 16 13 N -0.68 -19.72 6.30 -495.44 -3.12 -22.84 16 14 C 0.11 2.83 5.27 85.56 0.45 3.28 16 15 C -0.13 -2.84 5.41 -19.77 -0.11 -2.95 16 16 C -0.07 -1.41 9.66 22.25 0.22 -1.19 16 17 C -0.16 -2.37 10.04 22.28 0.22 -2.15 16 18 C -0.08 -1.05 10.04 22.25 0.22 -0.82 16 19 C -0.21 -2.94 9.04 22.36 0.20 -2.74 16 20 C 0.12 2.33 6.66 22.51 0.15 2.48 16 21 O -0.33 -6.73 9.21 -92.43 -0.85 -7.58 16 22 C 0.00 -0.01 4.96 71.98 0.36 0.34 16 23 C 0.26 3.14 5.63 71.98 0.41 3.54 16 24 F -0.22 -4.59 17.28 44.97 0.78 -3.81 16 25 F -0.22 -4.32 17.28 44.97 0.78 -3.54 16 26 C -0.11 -3.63 5.59 30.67 0.17 -3.46 16 27 C 0.14 5.86 6.52 86.36 0.56 6.42 16 28 H 0.26 16.10 8.31 -92.70 -0.77 15.33 16 29 H 0.03 1.30 7.08 -2.39 -0.02 1.28 16 30 H 0.05 2.52 4.50 -2.39 -0.01 2.51 16 31 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 1.23 7.80 -2.39 -0.02 1.22 16 34 H 0.34 10.08 8.27 -89.70 -0.74 9.34 16 35 H 0.08 1.98 7.27 -2.38 -0.02 1.97 16 36 H 0.03 0.74 7.77 -2.39 -0.02 0.72 16 37 H 0.14 2.31 8.04 -2.91 -0.02 2.29 16 38 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 39 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 40 H 0.15 1.13 6.30 -2.91 -0.02 1.11 16 41 H 0.12 0.58 7.66 -2.39 -0.02 0.56 16 42 H 0.11 0.68 7.66 -2.39 -0.02 0.66 16 43 H 0.18 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.08 2.29 7.42 -2.39 -0.02 2.27 16 46 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 47 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 Total: -1.00 -77.17 378.47 2.55 -74.62 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.15 Total: 14.98 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 4.78 Total: -7.56 kcal Atomic # 7 Polarization: -112.76 SS G_CDS: -4.75 Total: -117.51 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.85 Total: -7.58 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 1.55 Total: -7.36 kcal Atomic # 14 Polarization: 48.74 SS G_CDS: 1.67 Total: 50.42 kcal Total: -77.17 2.55 -74.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885975080.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.089 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds