Wall clock time and date at job start Sat Apr 11 2020 06:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47026 * 240.00382 * 3 2 1 5 5 H 1.48498 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47179 * 120.00392 * 3 2 1 7 7 C 1.37880 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99413 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00049 * 169.99525 * 10 9 7 12 12 C 1.53049 * 109.36436 * 183.18539 * 11 10 9 13 13 N 1.46956 * 109.36632 * 301.60352 * 12 11 10 14 14 C 1.46900 * 111.00164 * 183.19000 * 13 12 11 15 15 C 1.50693 * 109.47672 * 169.99782 * 14 13 12 16 16 C 1.38169 * 120.02813 * 260.00091 * 15 14 13 17 17 C 1.38243 * 120.05455 * 179.97438 * 16 15 14 18 18 C 1.38295 * 120.11401 * 0.04496 * 17 16 15 19 19 C 1.38122 * 120.05026 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.02675 * 79.97324 * 15 14 13 21 21 O 1.35897 * 120.05621 * 0.04919 * 20 15 14 22 22 C 1.42904 * 116.99781 * 179.97438 * 21 20 15 23 23 C 1.53000 * 109.46835 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47497 * 300.00236 * 23 22 21 25 25 F 1.39903 * 109.47242 * 60.00080 * 23 22 21 26 26 C 1.46952 * 110.88403 * 59.32154 * 13 12 11 27 27 C 1.46956 * 110.99893 * 293.79820 * 10 9 7 28 28 H 0.97000 * 120.00254 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47151 * 59.99712 * 9 7 2 30 30 H 1.08999 * 109.46869 * 299.99958 * 9 7 2 31 31 H 1.09004 * 109.48349 * 63.22280 * 11 10 9 32 32 H 1.08997 * 109.49313 * 303.15838 * 11 10 9 33 33 H 1.08999 * 109.49073 * 181.63448 * 12 11 10 34 34 H 1.09004 * 109.48980 * 61.57116 * 12 11 10 35 35 H 1.09000 * 109.46954 * 49.99406 * 14 13 12 36 36 H 1.09004 * 109.47193 * 290.00050 * 14 13 12 37 37 H 1.07998 * 119.97356 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.94707 * 180.02562 * 17 16 15 39 39 H 1.07997 * 119.97026 * 179.70067 * 18 17 16 40 40 H 1.08002 * 120.02294 * 179.97438 * 19 18 17 41 41 H 1.08993 * 109.47145 * 299.99865 * 22 21 20 42 42 H 1.08996 * 109.47124 * 60.00356 * 22 21 20 43 43 H 1.09002 * 109.47276 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.48917 * 60.64050 * 26 13 12 45 45 H 1.08998 * 109.48868 * 180.71842 * 26 13 12 46 46 H 1.08998 * 109.48931 * 296.77707 * 27 10 9 47 47 H 1.08996 * 109.48944 * 56.84745 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5209 -4.8940 0.2378 12 6 2.5564 -6.0187 0.3094 13 7 3.3194 -6.0592 -0.9459 14 6 4.2740 -7.1758 -0.9460 15 6 4.8580 -7.3374 -2.3258 16 6 4.3710 -8.3146 -3.1725 17 6 4.9060 -8.4631 -4.4386 18 6 5.9301 -7.6350 -4.8606 19 6 6.4206 -6.6569 -4.0177 20 6 5.8845 -6.5050 -2.7470 21 8 6.3654 -5.5434 -1.9158 22 6 7.4233 -4.7232 -2.4162 23 6 7.8293 -3.7064 -1.3475 24 9 6.7294 -2.9039 -1.0254 25 9 8.2647 -4.3820 -0.2024 26 6 4.0042 -4.7810 -1.1842 27 6 2.9686 -3.6562 -1.2558 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 0.8253 -5.0915 -0.5779 32 1 0.9733 -4.8434 1.1789 33 1 2.0486 -6.9718 0.4572 34 1 3.2356 -5.8353 1.1420 35 1 3.7600 -8.0932 -0.6592 36 1 5.0739 -6.9700 -0.2347 37 1 3.5718 -8.9630 -2.8451 38 1 4.5237 -9.2272 -5.0992 39 1 6.3496 -7.7562 -5.8483 40 1 7.2207 -6.0108 -4.3475 41 1 8.2800 -5.3484 -2.6674 42 1 7.0838 -4.1964 -3.3080 43 1 8.6359 -3.0804 -1.7292 44 1 4.6997 -4.5834 -0.3686 45 1 4.5516 -4.8317 -2.1254 46 1 2.2894 -3.8397 -2.0884 47 1 3.4765 -2.7032 -1.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895461742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:35 Heat of formation + Delta-G solvation = -92.449254 kcal Electronic energy + Delta-G solvation = -31169.124336 eV Core-core repulsion = 26795.232566 eV Total energy + Delta-G solvation = -4373.891769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.00026 -47.02149 -40.66998 -38.40070 -37.65326 -35.11519 -32.65336 -31.62921 -30.97235 -30.19281 -29.61072 -27.97530 -25.81102 -24.22721 -23.73496 -22.86975 -21.93842 -21.45175 -20.93903 -19.00588 -18.68243 -17.64131 -17.13813 -17.00253 -16.28310 -16.22526 -15.84436 -15.60245 -15.21731 -14.58119 -14.53474 -14.37033 -14.04450 -13.94676 -13.81385 -13.44725 -13.39488 -13.35718 -13.24315 -12.68473 -12.61977 -12.44266 -12.05312 -11.91548 -11.71761 -11.43733 -11.29900 -11.26135 -11.08169 -10.92373 -10.74162 -10.54029 -10.52261 -10.19780 -10.11010 -9.56872 -9.09951 -9.01653 -8.36889 -8.34613 -7.90765 -7.07869 -5.94261 -3.94786 1.16688 1.27744 2.67948 3.38718 3.41959 3.45852 3.53981 3.56132 3.92136 4.16458 4.40625 4.49845 4.53694 4.60635 4.65580 4.81414 4.87729 5.07505 5.10724 5.14756 5.18741 5.41174 5.42435 5.46730 5.56321 5.66695 5.77443 5.90513 5.91622 6.02463 6.13234 6.18941 6.26807 6.29818 6.38680 6.42997 6.56857 6.60370 6.79515 6.87402 7.11514 7.34579 7.40800 7.47164 7.54722 7.90743 8.20598 8.34366 8.67773 9.13206 9.68822 11.16757 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.003810 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.130237 B = 7346.646919 C = 8734.569804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.058 3.942 12 C 0.061 3.939 13 N -0.534 5.534 14 C 0.100 3.900 15 C -0.096 4.096 16 C -0.066 4.066 17 C -0.156 4.156 18 C -0.085 4.085 19 C -0.209 4.209 20 C 0.133 3.867 21 O -0.292 6.292 22 C 0.002 3.998 23 C 0.271 3.729 24 F -0.185 7.185 25 F -0.200 7.200 26 C 0.065 3.935 27 C 0.070 3.930 28 H 0.261 0.739 29 H -0.010 1.010 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.044 0.956 37 H 0.130 0.870 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.022 0.978 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.534 -16.676 -8.742 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.262 5.262 11 C -0.071 4.071 12 C -0.067 4.067 13 N -0.260 5.260 14 C -0.028 4.028 15 C -0.097 4.097 16 C -0.084 4.084 17 C -0.174 4.174 18 C -0.103 4.103 19 C -0.228 4.228 20 C 0.087 3.913 21 O -0.206 6.206 22 C -0.074 4.074 23 C 0.217 3.783 24 F -0.166 7.166 25 F -0.181 7.181 26 C -0.063 4.063 27 C -0.059 4.059 28 H 0.070 0.930 29 H 0.008 0.992 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.145 0.855 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.289 -16.476 -8.478 24.671 hybrid contribution 0.465 1.032 -0.211 1.152 sum 16.753 -15.444 -8.689 24.386 Atomic orbital electron populations 1.69955 1.06036 1.26716 1.51330 1.24977 0.94827 0.99194 0.95603 0.86583 0.79439 0.82886 0.78632 1.20322 1.21428 1.20195 1.21147 0.93474 0.89976 1.49623 0.91940 1.19684 0.90069 0.87422 0.95952 1.62265 1.27934 1.02606 1.33439 1.22041 0.94700 0.90123 1.00257 1.22148 0.96073 0.98381 0.90071 1.62286 1.25491 1.03528 1.34653 1.20843 0.94475 0.95362 0.92080 1.19199 0.96054 0.96536 0.97921 1.20893 0.97998 0.96560 0.92968 1.21047 0.98563 1.01163 0.96647 1.20886 0.96138 0.94377 0.98897 1.21155 1.04269 1.03123 0.94228 1.18763 0.94054 0.89080 0.89357 1.86371 1.49466 1.43967 1.40783 1.24023 0.91920 0.93716 0.97751 1.21976 0.86749 0.87014 0.82516 1.93135 1.55937 1.73994 1.93539 1.93021 1.89805 1.81481 1.53784 1.22390 0.95299 0.87668 1.00916 1.21998 0.95337 0.97733 0.90849 0.92988 0.99207 0.95339 0.95313 0.91153 0.91391 0.94374 0.90395 0.93752 0.85259 0.85945 0.85961 0.85697 0.89217 0.88808 0.85531 0.93991 0.90690 0.95932 0.89875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.29 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.50 -14.74 8.47 -34.44 -0.29 -15.04 16 8 H 0.06 1.83 7.13 -52.49 -0.37 1.45 16 9 C 0.19 5.34 4.72 -4.98 -0.02 5.32 16 10 N -0.54 -12.60 4.70 -235.92 -1.11 -13.71 16 11 C 0.06 1.15 5.61 -3.77 -0.02 1.12 16 12 C 0.06 1.02 5.61 -3.77 -0.02 1.00 16 13 N -0.53 -8.84 4.70 -235.91 -1.11 -9.95 16 14 C 0.10 1.36 4.99 -4.98 -0.02 1.34 16 15 C -0.10 -1.22 5.18 -104.48 -0.54 -1.76 16 16 C -0.07 -0.71 9.67 -39.60 -0.38 -1.09 16 17 C -0.16 -1.48 10.04 -39.56 -0.40 -1.88 16 18 C -0.08 -0.77 10.04 -39.60 -0.40 -1.17 16 19 C -0.21 -2.07 9.04 -39.43 -0.36 -2.43 16 20 C 0.13 1.62 5.41 -39.22 -0.21 1.41 16 21 O -0.29 -3.70 6.13 -19.42 -0.12 -3.82 16 22 C 0.00 0.02 4.96 37.16 0.18 0.21 16 23 C 0.27 2.60 5.63 37.16 0.21 2.81 16 24 F -0.18 -2.68 17.28 2.25 0.04 -2.64 16 25 F -0.20 -2.44 17.28 2.25 0.04 -2.40 16 26 C 0.06 1.18 4.15 -3.77 -0.02 1.17 16 27 C 0.07 1.52 5.43 -3.76 -0.02 1.50 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H -0.01 -0.29 8.12 -51.93 -0.42 -0.71 16 30 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.91 7.89 -51.93 -0.41 0.50 16 36 H 0.04 0.65 7.83 -51.93 -0.41 0.24 16 37 H 0.13 1.19 8.04 -52.49 -0.42 0.76 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 41 H 0.09 0.53 7.66 -51.93 -0.40 0.13 16 42 H 0.09 0.67 7.66 -51.93 -0.40 0.27 16 43 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 45 H 0.08 1.30 4.69 -51.93 -0.24 1.06 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.08 1.95 6.79 -51.93 -0.35 1.59 16 LS Contribution 379.79 15.07 5.72 5.72 Total: -1.00 -34.49 379.79 -10.32 -44.81 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -7.09 Total: -2.49 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -2.41 Total: -5.99 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -1.48 Total: -50.46 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: -0.12 Total: -3.82 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.08 Total: -5.04 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.49 -10.32 -44.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895461742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.638 kcal (2) G-P(sol) polarization free energy of solvation -34.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds