Wall clock time and date at job start Sat Apr 11 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99936 * 2 1 4 4 H 1.48504 * 109.47026 * 240.00382 * 3 2 1 5 5 H 1.48498 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47179 * 120.00392 * 3 2 1 7 7 C 1.37880 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99413 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00085 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.46955 * 111.00049 * 169.99525 * 10 9 7 12 12 C 1.53049 * 109.36436 * 183.18539 * 11 10 9 13 13 N 1.46956 * 109.36632 * 301.60352 * 12 11 10 14 14 C 1.46900 * 111.00164 * 183.19000 * 13 12 11 15 15 C 1.50693 * 109.47672 * 169.99782 * 14 13 12 16 16 C 1.38169 * 120.02813 * 260.00091 * 15 14 13 17 17 C 1.38243 * 120.05455 * 179.97438 * 16 15 14 18 18 C 1.38295 * 120.11401 * 0.04496 * 17 16 15 19 19 C 1.38122 * 120.05026 * 359.97438 * 18 17 16 20 20 C 1.38712 * 120.02675 * 79.97324 * 15 14 13 21 21 O 1.35897 * 120.05621 * 0.04919 * 20 15 14 22 22 C 1.42904 * 116.99781 * 179.97438 * 21 20 15 23 23 C 1.53000 * 109.46835 * 179.97438 * 22 21 20 24 24 F 1.39902 * 109.47497 * 300.00236 * 23 22 21 25 25 F 1.39903 * 109.47242 * 60.00080 * 23 22 21 26 26 C 1.46952 * 110.88403 * 59.32154 * 13 12 11 27 27 C 1.46956 * 110.99893 * 293.79820 * 10 9 7 28 28 H 0.97000 * 120.00254 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47151 * 59.99712 * 9 7 2 30 30 H 1.08999 * 109.46869 * 299.99958 * 9 7 2 31 31 H 1.09004 * 109.48349 * 63.22280 * 11 10 9 32 32 H 1.08997 * 109.49313 * 303.15838 * 11 10 9 33 33 H 1.08999 * 109.49073 * 181.63448 * 12 11 10 34 34 H 1.09004 * 109.48980 * 61.57116 * 12 11 10 35 35 H 1.09000 * 109.46954 * 49.99406 * 14 13 12 36 36 H 1.09004 * 109.47193 * 290.00050 * 14 13 12 37 37 H 1.07998 * 119.97356 * 359.97438 * 16 15 14 38 38 H 1.07997 * 119.94707 * 180.02562 * 17 16 15 39 39 H 1.07997 * 119.97026 * 179.70067 * 18 17 16 40 40 H 1.08002 * 120.02294 * 179.97438 * 19 18 17 41 41 H 1.08993 * 109.47145 * 299.99865 * 22 21 20 42 42 H 1.08996 * 109.47124 * 60.00356 * 22 21 20 43 43 H 1.09002 * 109.47276 * 180.02562 * 23 22 21 44 44 H 1.08998 * 109.48917 * 60.64050 * 26 13 12 45 45 H 1.08998 * 109.48868 * 180.71842 * 26 13 12 46 46 H 1.08998 * 109.48931 * 296.77707 * 27 10 9 47 47 H 1.08996 * 109.48944 * 56.84745 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5209 -4.8940 0.2378 12 6 2.5564 -6.0187 0.3094 13 7 3.3194 -6.0592 -0.9459 14 6 4.2740 -7.1758 -0.9460 15 6 4.8580 -7.3374 -2.3258 16 6 4.3710 -8.3146 -3.1725 17 6 4.9060 -8.4631 -4.4386 18 6 5.9301 -7.6350 -4.8606 19 6 6.4206 -6.6569 -4.0177 20 6 5.8845 -6.5050 -2.7470 21 8 6.3654 -5.5434 -1.9158 22 6 7.4233 -4.7232 -2.4162 23 6 7.8293 -3.7064 -1.3475 24 9 6.7294 -2.9039 -1.0254 25 9 8.2647 -4.3820 -0.2024 26 6 4.0042 -4.7810 -1.1842 27 6 2.9686 -3.6562 -1.2558 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8902 30 1 0.6247 -2.5571 0.8897 31 1 0.8253 -5.0915 -0.5779 32 1 0.9733 -4.8434 1.1789 33 1 2.0486 -6.9718 0.4572 34 1 3.2356 -5.8353 1.1420 35 1 3.7600 -8.0932 -0.6592 36 1 5.0739 -6.9700 -0.2347 37 1 3.5718 -8.9630 -2.8451 38 1 4.5237 -9.2272 -5.0992 39 1 6.3496 -7.7562 -5.8483 40 1 7.2207 -6.0108 -4.3475 41 1 8.2800 -5.3484 -2.6674 42 1 7.0838 -4.1964 -3.3080 43 1 8.6359 -3.0804 -1.7292 44 1 4.6997 -4.5834 -0.3686 45 1 4.5516 -4.8317 -2.1254 46 1 2.2894 -3.8397 -2.0884 47 1 3.4765 -2.7032 -1.4036 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895461742.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:34 Heat of formation + Delta-G solvation = -115.662949 kcal Electronic energy + Delta-G solvation = -31170.130957 eV Core-core repulsion = 26795.232566 eV Total energy + Delta-G solvation = -4374.898391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.87120 -47.93357 -41.52054 -39.89111 -38.45093 -36.71081 -34.66758 -32.80674 -31.83609 -31.63658 -30.48681 -29.63242 -27.43578 -25.28434 -25.04760 -24.30456 -23.27810 -22.67369 -22.00101 -20.62450 -19.43662 -18.49512 -18.47583 -17.96210 -17.80280 -17.47182 -16.71738 -16.68109 -16.42371 -16.20923 -15.81094 -15.68943 -15.44677 -15.25249 -14.95198 -14.90326 -14.76315 -14.29771 -14.26087 -14.10703 -13.66519 -13.48399 -13.40778 -13.25895 -13.14820 -12.89453 -12.70763 -12.44904 -12.36316 -12.23050 -12.20348 -12.04625 -11.96017 -11.87466 -11.65617 -11.32284 -11.19314 -10.62160 -9.81739 -9.35118 -9.09742 -9.00284 -8.21289 -6.31750 0.40036 0.52018 1.38387 1.42793 1.50868 1.98946 2.39616 2.72610 2.85725 3.10139 3.19854 3.29991 3.32511 3.51434 3.79251 3.86924 3.96993 4.02061 4.10140 4.17788 4.23543 4.32864 4.39089 4.40946 4.41079 4.47981 4.53202 4.61245 4.67752 4.71576 4.85197 4.88974 4.97515 5.03683 5.08700 5.10492 5.20557 5.27508 5.38504 5.54352 5.62857 5.65543 5.88166 6.00943 6.07524 6.10121 6.34074 6.39494 6.62682 6.83163 7.37603 8.89939 Molecular weight = 340.17amu Principal moments of inertia in cm(-1) A = 0.011025 B = 0.003810 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.130237 B = 7346.646919 C = 8734.569804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.524 4.524 8 H 0.057 0.943 9 C 0.210 3.790 10 N -0.546 5.546 11 C 0.055 3.945 12 C 0.069 3.931 13 N -0.540 5.540 14 C 0.106 3.894 15 C -0.126 4.126 16 C -0.072 4.072 17 C -0.160 4.160 18 C -0.084 4.084 19 C -0.212 4.212 20 C 0.114 3.886 21 O -0.323 6.323 22 C -0.003 4.003 23 C 0.257 3.743 24 F -0.219 7.219 25 F -0.218 7.218 26 C 0.090 3.910 27 C 0.075 3.925 28 H 0.265 0.735 29 H -0.041 1.041 30 H 0.005 0.995 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.031 0.969 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.141 0.859 38 H 0.146 0.854 39 H 0.151 0.849 40 H 0.150 0.850 41 H 0.121 0.879 42 H 0.110 0.890 43 H 0.180 0.820 44 H 0.022 0.978 45 H 0.088 0.912 46 H 0.009 0.991 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.554 -17.636 -10.411 27.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.084 3.916 10 N -0.271 5.271 11 C -0.073 4.073 12 C -0.059 4.059 13 N -0.265 5.265 14 C -0.021 4.021 15 C -0.127 4.127 16 C -0.091 4.091 17 C -0.178 4.178 18 C -0.102 4.102 19 C -0.231 4.231 20 C 0.069 3.931 21 O -0.237 6.237 22 C -0.079 4.079 23 C 0.204 3.796 24 F -0.201 7.201 25 F -0.200 7.200 26 C -0.038 4.038 27 C -0.054 4.054 28 H 0.074 0.926 29 H -0.023 1.023 30 H 0.023 0.977 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.049 0.951 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.169 0.831 40 H 0.168 0.832 41 H 0.139 0.861 42 H 0.127 0.873 43 H 0.197 0.803 44 H 0.041 0.959 45 H 0.106 0.894 46 H 0.027 0.973 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.324 -17.469 -10.150 27.275 hybrid contribution -0.154 1.252 0.252 1.287 sum 18.170 -16.217 -9.898 26.288 Atomic orbital electron populations 1.70082 1.07710 1.28020 1.51626 1.25914 0.95769 1.03152 0.94627 0.85439 0.78222 0.77841 0.79152 1.19125 1.20378 1.19429 1.21379 0.93358 0.91155 1.50369 0.92439 1.19342 0.90025 0.89001 0.93261 1.62212 1.27297 1.03239 1.34321 1.22160 0.95636 0.89470 1.00063 1.22106 0.95267 0.98482 0.90012 1.62294 1.26313 1.03470 1.34401 1.20840 0.93540 0.94591 0.93090 1.19278 0.97405 0.98259 0.97786 1.21115 0.98312 0.96252 0.93402 1.21391 0.98409 1.01624 0.96381 1.21311 0.95536 0.93440 0.99906 1.21482 1.04662 1.03587 0.93328 1.19007 0.94521 0.89252 0.90299 1.86302 1.50840 1.44569 1.41980 1.24312 0.92228 0.93691 0.97641 1.22805 0.87087 0.87680 0.81987 1.93061 1.58080 1.75069 1.93872 1.92974 1.89888 1.81994 1.55143 1.22059 0.93445 0.87388 1.00882 1.21937 0.95478 0.98353 0.89607 0.92586 1.02331 0.97692 0.95946 0.90838 0.87772 0.95080 0.88231 0.95133 0.84075 0.83619 0.83132 0.83215 0.86094 0.87250 0.80311 0.95923 0.89408 0.97263 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.97 46.13 29.54 68.60 2.03 48.16 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.52 -31.82 8.47 25.60 0.22 -31.60 16 8 H 0.06 3.48 7.13 -2.91 -0.02 3.46 16 9 C 0.21 12.20 4.72 85.56 0.40 12.60 16 10 N -0.55 -26.77 4.70 -900.31 -4.23 -31.00 16 11 C 0.06 2.24 5.61 86.31 0.48 2.73 16 12 C 0.07 2.27 5.61 86.31 0.48 2.75 16 13 N -0.54 -17.71 4.70 -900.29 -4.23 -21.94 16 14 C 0.11 2.81 4.99 85.55 0.43 3.24 16 15 C -0.13 -3.05 5.18 -19.77 -0.10 -3.15 16 16 C -0.07 -1.42 9.67 22.25 0.22 -1.20 16 17 C -0.16 -2.56 10.04 22.28 0.22 -2.34 16 18 C -0.08 -1.25 10.04 22.26 0.22 -1.03 16 19 C -0.21 -3.63 9.04 22.37 0.20 -3.42 16 20 C 0.11 2.63 5.41 22.51 0.12 2.76 16 21 O -0.32 -7.96 6.13 -92.39 -0.57 -8.52 16 22 C 0.00 -0.05 4.96 71.98 0.36 0.31 16 23 C 0.26 4.67 5.63 71.98 0.41 5.07 16 24 F -0.22 -6.50 17.28 44.97 0.78 -5.72 16 25 F -0.22 -5.29 17.28 44.97 0.78 -4.52 16 26 C 0.09 3.37 4.15 86.31 0.36 3.73 16 27 C 0.07 3.42 5.43 86.31 0.47 3.89 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H -0.04 -2.58 8.12 -2.39 -0.02 -2.60 16 30 H 0.00 0.31 8.03 -2.39 -0.02 0.29 16 31 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.07 2.89 8.07 -2.39 -0.02 2.87 16 33 H 0.10 2.69 8.07 -2.39 -0.02 2.67 16 34 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 2.14 7.89 -2.39 -0.02 2.13 16 36 H 0.03 0.89 7.83 -2.39 -0.02 0.87 16 37 H 0.14 2.28 8.04 -2.91 -0.02 2.26 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 40 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 41 H 0.12 1.07 7.66 -2.39 -0.02 1.05 16 42 H 0.11 1.31 7.66 -2.39 -0.02 1.29 16 43 H 0.18 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.02 0.93 7.89 -2.39 -0.02 0.92 16 45 H 0.09 3.09 4.69 -2.39 -0.01 3.08 16 46 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 47 H 0.06 2.97 6.79 -2.39 -0.02 2.96 16 Total: -1.00 -78.52 379.79 0.75 -77.77 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.97 Total: 8.93 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 4.95 Total: -5.02 kcal Atomic # 7 Polarization: -102.89 SS G_CDS: -8.18 Total: -111.07 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.57 Total: -8.52 kcal Atomic # 9 Polarization: -11.79 SS G_CDS: 1.55 Total: -10.24 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -78.52 0.75 -77.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895461742.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.897 kcal (2) G-P(sol) polarization free energy of solvation -78.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds