Wall clock time and date at job start Sat Apr 11 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.49706 * 2 1 4 4 O 1.43212 * 109.50075 * 120.07865 * 2 1 3 5 5 C 1.43841 * 106.43854 * 101.21247 * 4 2 1 6 6 H 1.08990 * 112.57476 * 266.07669 * 5 4 2 7 7 C 1.53772 * 109.54519 * 140.05224 * 5 4 2 8 8 C 1.53610 * 106.07393 * 277.86895 * 7 5 4 9 9 H 1.09001 * 109.90028 * 101.43932 * 8 7 5 10 10 N 1.46506 * 109.89511 * 222.48712 * 8 7 5 11 11 C 1.34776 * 119.99497 * 204.64876 * 10 8 7 12 12 O 1.21582 * 120.00423 * 0.02562 * 11 10 8 13 13 N 1.34785 * 119.99453 * 179.97438 * 11 10 8 14 14 C 1.47019 * 125.64770 * 0.04572 * 13 11 10 15 15 C 1.54324 * 107.27118 * 181.02535 * 14 13 11 16 16 C 1.55155 * 102.94145 * 22.18930 * 15 14 13 17 17 O 1.42900 * 111.03660 * 82.59071 * 16 15 14 18 18 C 1.50702 * 111.00366 * 206.42519 * 16 15 14 19 19 H 1.08002 * 120.00299 * 353.65569 * 18 16 15 20 20 C 1.37884 * 119.99942 * 173.37128 * 18 16 15 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 16 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 16 23 23 H 1.48504 * 109.47196 * 60.00645 * 22 20 18 24 24 H 1.48504 * 109.46887 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47679 * 300.00280 * 22 20 18 26 26 C 1.47420 * 125.64611 * 180.02562 * 13 11 10 27 27 C 1.53498 * 107.33740 * 341.96067 * 8 7 5 28 28 C 1.54050 * 107.19788 * 0.02562 * 27 8 7 29 29 H 1.09000 * 112.83581 * 254.56644 * 28 27 8 30 30 O 1.43079 * 109.50080 * 239.97209 * 2 1 3 31 31 H 1.09002 * 109.46861 * 299.92539 * 1 2 3 32 32 H 1.08997 * 109.46899 * 59.92491 * 1 2 3 33 33 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47129 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.47681 * 300.07641 * 3 2 1 36 36 H 1.09005 * 109.47445 * 60.07979 * 3 2 1 37 37 H 1.08998 * 110.13238 * 158.71323 * 7 5 4 38 38 H 1.09000 * 110.13115 * 37.01745 * 7 5 4 39 39 H 0.96990 * 119.99806 * 24.65138 * 10 8 7 40 40 H 1.09004 * 109.88269 * 300.43820 * 14 13 11 41 41 H 1.08997 * 109.88651 * 61.45256 * 14 13 11 42 42 H 1.09000 * 110.71623 * 263.83158 * 15 14 13 43 43 H 1.09000 * 110.72442 * 140.55473 * 15 14 13 44 44 H 0.96704 * 113.99783 * 183.19809 * 17 16 15 45 45 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 46 46 H 1.09003 * 110.36919 * 37.07159 * 26 13 11 47 47 H 1.09003 * 110.46259 * 274.79080 * 26 13 11 48 48 H 1.09008 * 109.86324 * 119.50174 * 27 8 7 49 49 H 1.08999 * 109.87109 * 240.60309 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 8 2.0082 -0.6766 1.1682 5 6 2.3969 -1.9951 0.7445 6 1 1.6001 -2.7276 0.8724 7 6 3.6944 -2.4041 1.4613 8 6 4.8404 -1.7587 0.6678 9 1 5.1908 -0.8644 1.1831 10 7 5.9426 -2.7123 0.5188 11 6 7.1985 -2.2649 0.3216 12 8 7.4169 -1.0701 0.2677 13 7 8.2126 -3.1422 0.1851 14 6 8.0905 -4.6067 0.2294 15 6 9.5084 -5.1902 0.0538 16 6 10.4239 -4.0147 0.4866 17 8 10.5617 -3.9684 1.9082 18 6 11.7719 -4.1059 -0.1811 19 1 12.0219 -4.9710 -0.7773 20 6 12.6839 -3.0820 -0.0357 21 7 12.3795 -2.0285 0.6903 22 14 14.3518 -3.1915 -0.8696 23 1 14.1646 -3.2990 -2.3388 24 1 15.1416 -1.9729 -0.5586 25 1 15.0755 -4.3897 -0.3738 26 6 9.6278 -2.7922 -0.0338 27 6 4.2854 -1.3821 -0.7129 28 6 2.8043 -1.8049 -0.7392 29 1 2.6304 -2.7000 -1.3364 30 8 2.0077 -0.6749 -1.1677 31 1 -0.3633 0.5127 0.8907 32 1 -0.3633 0.5150 -0.8893 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1307 1.4417 -0.0005 35 1 1.6765 1.9567 -0.8893 36 1 1.6788 1.9559 0.8907 37 1 3.7994 -3.4890 1.4569 38 1 3.6907 -2.0312 2.4855 39 1 5.7684 -3.6654 0.5621 40 1 7.6790 -4.9154 1.1904 41 1 7.4435 -4.9494 -0.5781 42 1 9.6894 -5.4567 -0.9875 43 1 9.6540 -6.0523 0.7046 44 1 11.0853 -3.2211 2.2284 45 1 13.0213 -1.3083 0.7929 46 1 9.8900 -1.8993 0.5337 47 1 9.8223 -2.6370 -1.0951 48 1 4.3682 -0.3058 -0.8645 49 1 4.8365 -1.9109 -1.4905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927366256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:40 Heat of formation + Delta-G solvation = -188.249743 kcal Electronic energy + Delta-G solvation = -31159.893525 eV Core-core repulsion = 26892.935050 eV Total energy + Delta-G solvation = -4266.958475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.23546 -41.17224 -39.24977 -37.56919 -36.16966 -36.03693 -34.46431 -34.22419 -32.44906 -31.43233 -29.59789 -29.53040 -28.38001 -27.80131 -26.55626 -24.24099 -22.45539 -22.24377 -21.73770 -21.39289 -20.94048 -19.25831 -18.82333 -18.29219 -17.55448 -17.20033 -16.88695 -16.81507 -16.50280 -16.24879 -15.90372 -15.66608 -15.24656 -14.92889 -14.75535 -14.62122 -14.43618 -14.29035 -13.79943 -13.58201 -13.54644 -13.38958 -13.25841 -13.18019 -13.09817 -13.03463 -12.80810 -12.67964 -12.65643 -12.50913 -12.33449 -12.25417 -12.10409 -12.07416 -11.78308 -11.31245 -11.22331 -11.15902 -10.65717 -10.59380 -10.33065 -10.16972 -9.32105 -8.24030 -6.41790 1.43304 1.43927 1.52212 1.66039 2.11879 2.30434 2.38456 2.91093 3.01701 3.06443 3.26557 3.46332 3.77331 3.81549 3.91851 3.94203 3.98424 4.10313 4.18628 4.21455 4.28904 4.33103 4.36860 4.50132 4.52615 4.64398 4.64929 4.68981 4.76380 4.78229 4.80680 4.95646 4.98504 5.01636 5.08966 5.11855 5.15709 5.16527 5.24729 5.31968 5.40826 5.47850 5.57880 5.76638 6.05167 6.20162 6.26208 6.65896 7.08663 7.28057 7.35204 7.59246 8.80507 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.026823 B = 0.002344 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.639661 B =11943.301580 C =12348.751438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.246 3.754 3 C -0.161 4.161 4 O -0.382 6.382 5 C 0.054 3.946 6 H 0.133 0.867 7 C -0.116 4.116 8 C 0.165 3.835 9 H 0.057 0.943 10 N -0.720 5.720 11 C 0.709 3.291 12 O -0.646 6.646 13 N -0.633 5.633 14 C 0.107 3.893 15 C -0.110 4.110 16 C 0.232 3.768 17 O -0.587 6.587 18 C -0.556 4.556 19 H 0.070 0.930 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.268 1.268 26 C 0.128 3.872 27 C -0.147 4.147 28 C 0.060 3.940 29 H 0.151 0.849 30 O -0.391 6.391 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.373 0.627 45 H 0.268 0.732 46 H 0.040 0.960 47 H 0.036 0.964 48 H 0.056 0.944 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.619 -3.888 -1.202 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.170 3.830 3 C -0.218 4.218 4 O -0.304 6.304 5 C -0.003 4.003 6 H 0.150 0.850 7 C -0.154 4.154 8 C 0.059 3.941 9 H 0.075 0.925 10 N -0.377 5.377 11 C 0.411 3.589 12 O -0.529 6.529 13 N -0.369 5.369 14 C -0.015 4.015 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.395 6.395 18 C -0.594 4.594 19 H 0.088 0.912 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.789 3.211 23 H -0.195 1.195 24 H -0.213 1.213 25 H -0.193 1.193 26 C 0.005 3.995 27 C -0.186 4.186 28 C 0.003 3.997 29 H 0.168 0.832 30 O -0.312 6.312 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.249 0.751 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.221 0.779 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -24.863 -3.198 -1.200 25.097 hybrid contribution 1.879 0.863 -0.327 2.093 sum -22.985 -2.335 -1.527 23.154 Atomic orbital electron populations 1.22327 0.91950 1.03847 1.03895 1.23479 0.94102 0.91208 0.74245 1.22204 1.01343 0.94326 1.03955 1.88899 1.83980 1.26049 1.31456 1.24337 0.97508 0.86020 0.92414 0.84987 1.22413 0.90001 1.03098 0.99888 1.21129 0.85863 0.91905 0.95161 0.92511 1.45089 1.04080 1.10422 1.78151 1.15793 0.81140 0.84006 0.77961 1.90854 1.84233 1.16441 1.61355 1.47871 1.07259 1.07300 1.74519 1.22138 0.98620 0.78481 1.02262 1.22593 0.92356 0.97699 1.02165 1.19868 0.92106 0.90130 0.78786 1.86080 1.76264 1.53200 1.23949 1.21785 1.00008 1.05256 1.32385 0.91154 1.25860 1.02329 0.94424 0.95067 1.69853 1.37063 1.08551 1.40042 0.85517 0.79065 0.77470 0.79037 1.19475 1.21335 1.19299 1.22623 0.77955 1.00707 0.98254 1.22922 0.96177 1.01669 0.97826 1.24627 0.89319 0.90016 0.95707 0.83152 1.88858 1.68953 1.42860 1.30569 0.89878 0.90224 0.91191 0.93588 0.89723 0.89794 0.85932 0.89273 0.75098 0.90637 0.88905 0.89289 0.89520 0.77894 0.92248 0.94108 0.94517 0.92552 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.22 71.99 0.66 -1.55 16 2 C 0.25 4.71 1.52 30.60 0.05 4.76 16 3 C -0.16 -3.12 9.22 71.98 0.66 -2.45 16 4 O -0.38 -7.78 10.51 -126.23 -1.33 -9.10 16 5 C 0.05 0.81 4.47 31.55 0.14 0.95 16 6 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 7 C -0.12 -1.83 6.17 31.06 0.19 -1.64 16 8 C 0.17 4.16 3.23 45.36 0.15 4.31 16 9 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 10 N -0.72 -19.78 4.92 -456.01 -2.24 -22.02 16 11 C 0.71 28.75 8.48 179.05 1.52 30.27 16 12 O -0.65 -32.97 16.26 -3.97 -0.06 -33.04 16 13 N -0.63 -25.75 3.33 -829.79 -2.76 -28.51 16 14 C 0.11 3.28 6.15 86.73 0.53 3.81 16 15 C -0.11 -4.02 6.13 31.78 0.19 -3.82 16 16 C 0.23 11.13 0.88 -10.15 -0.01 11.12 16 17 O -0.59 -30.11 13.18 -148.98 -1.96 -32.07 16 18 C -0.56 -28.80 8.27 25.60 0.21 -28.59 16 19 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 20 C 0.02 1.27 5.27 84.66 0.45 1.72 16 21 N -0.92 -50.78 10.67 21.45 0.23 -50.55 16 22 Si 0.96 41.95 29.54 68.60 2.03 43.98 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 26 C 0.13 6.42 5.38 86.85 0.47 6.89 16 27 C -0.15 -3.59 6.32 31.12 0.20 -3.39 16 28 C 0.06 1.05 4.73 31.64 0.15 1.20 16 29 H 0.15 1.73 8.14 -2.39 -0.02 1.71 16 30 O -0.39 -8.33 10.30 -126.23 -1.30 -9.63 16 31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 1.09 7.80 -2.39 -0.02 1.07 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.12 1.14 7.63 -2.39 -0.02 1.12 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 8.10 7.27 -92.72 -0.67 7.43 16 40 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 3.01 8.03 -2.39 -0.02 2.99 16 43 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.37 20.26 7.51 -74.05 -0.56 19.70 16 45 H 0.27 14.37 8.31 -92.70 -0.77 13.60 16 46 H 0.04 2.37 7.32 -2.39 -0.02 2.36 16 47 H 0.04 1.93 8.03 -2.39 -0.02 1.91 16 48 H 0.06 1.69 7.58 -2.38 -0.02 1.67 16 49 H 0.07 1.90 7.90 -2.39 -0.02 1.88 16 Total: -1.00 -72.41 387.76 -2.11 -74.52 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -0.26 Total: 42.85 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 5.56 Total: 23.57 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.78 Total: -101.08 kcal Atomic # 8 Polarization: -79.19 SS G_CDS: -4.65 Total: -83.84 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -72.41 -2.11 -74.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927366256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.731 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds