Wall clock time and date at job start Sat Apr 11 2020 06:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99678 * 2 1 4 4 H 1.48495 * 109.47296 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47042 * 120.00126 * 3 2 1 6 6 H 1.48499 * 109.46942 * 239.99714 * 3 2 1 7 7 C 1.38810 * 119.99931 * 179.72474 * 2 1 3 8 8 H 1.08001 * 120.00011 * 212.99188 * 7 2 1 9 9 N 1.36931 * 120.00086 * 32.99150 * 7 2 1 10 10 C 1.47157 * 120.98836 * 23.67915 * 9 7 2 11 11 C 1.53297 * 108.37291 * 129.40593 * 10 9 7 12 12 O 1.42963 * 109.23245 * 52.35317 * 11 10 9 13 13 C 1.42902 * 114.20520 * 297.50712 * 12 11 10 14 14 C 1.52986 * 109.55775 * 302.52213 * 13 12 11 15 15 C 1.53196 * 109.34778 * 300.96320 * 14 13 12 16 16 N 1.46928 * 108.77752 * 305.42815 * 15 14 13 17 17 C 1.34773 * 120.64075 * 233.68908 * 16 15 14 18 18 O 1.21280 * 120.00202 * 354.64888 * 17 16 15 19 19 C 1.50698 * 119.99900 * 174.65038 * 17 16 15 20 20 H 1.09005 * 109.52719 * 311.29761 * 19 17 16 21 21 C 1.53144 * 109.52599 * 71.42607 * 19 17 16 22 22 O 1.43084 * 109.14477 * 175.14602 * 21 19 17 23 23 C 1.43069 * 113.65101 * 302.14759 * 22 21 19 24 24 C 1.53147 * 109.15224 * 57.91593 * 23 22 21 25 25 O 1.43069 * 109.52633 * 191.16267 * 19 17 16 26 26 C 1.46927 * 118.71566 * 53.66675 * 16 15 14 27 27 C 1.52997 * 109.55052 * 182.22342 * 13 12 11 28 28 C 1.47155 * 120.98694 * 203.39492 * 9 7 2 29 29 H 0.97004 * 119.99548 * 180.75335 * 1 2 3 30 30 H 1.09005 * 109.67931 * 249.12508 * 10 9 7 31 31 H 1.08993 * 109.68003 * 9.64242 * 10 9 7 32 32 H 1.09006 * 109.50548 * 172.27595 * 11 10 9 33 33 H 1.08997 * 109.51439 * 292.37132 * 11 10 9 34 34 H 1.09005 * 109.49288 * 60.92315 * 14 13 12 35 35 H 1.08998 * 109.49680 * 181.00113 * 14 13 12 36 36 H 1.09005 * 109.58906 * 185.63917 * 15 14 13 37 37 H 1.09002 * 109.58221 * 65.21760 * 15 14 13 38 38 H 1.09003 * 109.52343 * 295.11638 * 21 19 17 39 39 H 1.09001 * 109.52795 * 55.31115 * 21 19 17 40 40 H 1.09001 * 109.52522 * 298.01771 * 23 22 21 41 41 H 1.09002 * 109.53042 * 177.82108 * 23 22 21 42 42 H 1.08999 * 109.52612 * 184.78609 * 24 23 22 43 43 H 1.08997 * 109.57242 * 64.62245 * 24 23 22 44 44 H 1.09005 * 109.58643 * 186.54285 * 26 16 15 45 45 H 1.08998 * 109.58833 * 66.11886 * 26 16 15 46 46 H 1.08995 * 109.49621 * 178.99723 * 27 13 12 47 47 H 1.09000 * 109.48861 * 299.05242 * 27 13 12 48 48 H 1.08998 * 109.67717 * 350.20443 * 28 9 7 49 49 H 1.08993 * 109.67816 * 110.74397 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0058 8 1 2.9596 -1.2751 0.5154 9 7 1.4912 -2.2955 -0.6347 10 6 0.5230 -2.1418 -1.7322 11 6 1.0066 -2.9767 -2.9235 12 8 1.2643 -4.3137 -2.4879 13 6 2.2996 -4.4217 -1.5089 14 6 3.5932 -3.8217 -2.0632 15 6 3.9913 -4.5666 -3.3413 16 7 4.0699 -6.0037 -3.0461 17 6 5.1845 -6.7043 -3.3349 18 8 6.0975 -6.1729 -3.9306 19 6 5.2963 -8.1480 -2.9175 20 1 5.0161 -8.2468 -1.8687 21 6 4.3632 -9.0037 -3.7792 22 8 4.5585 -10.3834 -3.4545 23 6 5.9058 -10.8301 -3.6337 24 6 6.8378 -9.9742 -2.7710 25 8 6.6436 -8.5946 -3.0967 26 6 2.9102 -6.6622 -2.4296 27 6 2.5239 -5.8947 -1.1613 28 6 1.8897 -3.6588 -0.2500 29 1 -0.4850 -0.8400 0.0110 30 1 -0.4565 -2.4950 -1.4098 31 1 0.4584 -1.0927 -2.0204 32 1 0.2380 -2.9873 -3.6964 33 1 1.9213 -2.5414 -3.3258 34 1 3.4368 -2.7672 -2.2906 35 1 4.3867 -3.9206 -1.3225 36 1 4.9627 -4.2103 -3.6844 37 1 3.2423 -4.3926 -4.1139 38 1 3.3279 -8.7250 -3.5823 39 1 4.5906 -8.8426 -4.8329 40 1 6.1863 -10.7302 -4.6823 41 1 5.9867 -11.8743 -3.3319 42 1 7.8733 -10.2526 -2.9667 43 1 6.6102 -10.1353 -1.7172 44 1 3.1680 -7.6893 -2.1708 45 1 2.0736 -6.6583 -3.1282 46 1 3.3259 -5.9773 -0.4278 47 1 1.6072 -6.3142 -0.7468 48 1 2.7315 -3.6140 0.4409 49 1 1.0504 -4.1660 0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949306104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:53 Heat of formation + Delta-G solvation = -126.174075 kcal Electronic energy + Delta-G solvation = -32083.863794 eV Core-core repulsion = 27819.597123 eV Total energy + Delta-G solvation = -4264.266672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06209 -39.96828 -38.78551 -36.60777 -36.12346 -34.67159 -33.00253 -32.27569 -31.15599 -30.74641 -28.85773 -28.31385 -26.46571 -25.37413 -23.65559 -23.55874 -23.07029 -22.08304 -21.00530 -19.75204 -18.79236 -17.81608 -17.49798 -17.12515 -17.07015 -16.39890 -15.89868 -15.77950 -15.45185 -15.15296 -14.81413 -14.69862 -14.36781 -14.28788 -14.05897 -13.84512 -13.62580 -13.48832 -13.11176 -13.05293 -12.85076 -12.52755 -12.15352 -12.09139 -11.98442 -11.66959 -11.34378 -11.21188 -11.15008 -11.00892 -10.92916 -10.66863 -10.49059 -10.42556 -10.12197 -9.98257 -9.83304 -9.58966 -9.41240 -9.24319 -8.69842 -8.29367 -6.95271 -6.25893 -3.24583 2.33410 2.52437 3.23264 3.44744 3.48771 3.49535 3.66415 4.07148 4.11116 4.21737 4.45070 4.48227 4.53776 4.65010 4.69239 4.76298 4.86699 5.00065 5.08992 5.09959 5.16509 5.20705 5.28682 5.31931 5.33208 5.39133 5.43639 5.57750 5.72629 5.80639 5.88199 5.94856 5.99919 6.05536 6.17954 6.24647 6.31592 6.36350 6.45831 6.50119 6.57437 6.66971 6.77130 6.97378 7.25719 7.72755 7.88934 8.00246 8.46096 8.97684 9.75309 10.19184 11.09266 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.002747 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.340467 B =10190.533216 C =10598.585843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.020 4.020 3 Si 1.060 2.940 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.362 4.362 8 H 0.059 0.941 9 N -0.597 5.597 10 C 0.120 3.880 11 C 0.042 3.958 12 O -0.380 6.380 13 C 0.106 3.894 14 C -0.150 4.150 15 C 0.120 3.880 16 N -0.602 5.602 17 C 0.523 3.477 18 O -0.520 6.520 19 C 0.039 3.961 20 H 0.094 0.906 21 C 0.032 3.968 22 O -0.373 6.373 23 C 0.020 3.980 24 C 0.023 3.977 25 O -0.351 6.351 26 C 0.104 3.896 27 C -0.118 4.118 28 C 0.129 3.871 29 H 0.269 0.731 30 H 0.024 0.976 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.117 0.883 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.061 0.939 49 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.678 -20.384 -6.716 22.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.223 4.223 3 Si 0.890 3.110 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.490 4.490 8 H 0.077 0.923 9 N -0.322 5.322 10 C -0.006 4.006 11 C -0.036 4.036 12 O -0.299 6.299 13 C 0.065 3.935 14 C -0.188 4.188 15 C -0.002 4.002 16 N -0.337 5.337 17 C 0.309 3.691 18 O -0.395 6.395 19 C -0.023 4.023 20 H 0.112 0.888 21 C -0.045 4.045 22 O -0.291 6.291 23 C -0.057 4.057 24 C -0.054 4.054 25 O -0.269 6.269 26 C -0.019 4.019 27 C -0.157 4.157 28 C 0.003 3.997 29 H 0.080 0.920 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.103 0.897 48 H 0.079 0.921 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 7.917 -18.553 -7.086 21.380 hybrid contribution 0.258 -1.453 0.346 1.516 sum 8.175 -20.006 -6.740 22.638 Atomic orbital electron populations 1.70831 1.06746 1.30257 1.46452 1.25780 0.96190 1.01438 0.98901 0.83574 0.75032 0.76038 0.76371 1.21116 1.21921 1.21987 1.19862 1.03154 0.89845 1.36107 0.92312 1.44106 1.51336 1.00558 1.36171 1.21554 0.91861 0.99735 0.87493 1.23155 0.99732 0.83288 0.97381 1.87776 1.55570 1.27666 1.58889 1.21723 0.87024 0.94053 0.90748 1.22377 0.97690 1.01678 0.97033 1.21630 1.02687 0.78082 0.97795 1.48063 1.14163 1.10209 1.61264 1.19830 0.82355 0.87093 0.79856 1.90718 1.38408 1.70669 1.39743 1.22578 0.85555 0.93110 1.01059 0.88831 1.23329 1.00468 0.81660 0.99033 1.88125 1.27567 1.24681 1.88723 1.23327 0.82678 0.99437 1.00212 1.23354 1.01251 0.81662 0.99170 1.88234 1.24740 1.25232 1.88673 1.21926 0.88458 0.95763 0.95722 1.21876 1.02462 0.94378 0.96984 1.21394 0.98072 0.86932 0.93339 0.92015 0.95818 0.89920 0.90011 0.93288 0.88592 0.91214 0.89316 0.90972 0.86532 0.91285 0.91780 0.87358 0.87144 0.91765 0.90033 0.89760 0.90346 0.89749 0.92092 0.95936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 12.62 55.49 0.70 -25.62 16 2 C -0.02 -0.54 4.49 -17.43 -0.08 -0.62 16 3 Si 1.06 24.60 30.03 -169.99 -5.10 19.50 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.36 -9.68 9.49 -15.06 -0.14 -9.82 16 8 H 0.06 1.60 7.99 -52.49 -0.42 1.18 16 9 N -0.60 -14.15 2.44 -172.13 -0.42 -14.58 16 10 C 0.12 2.66 5.00 -3.53 -0.02 2.64 16 11 C 0.04 0.75 6.60 37.31 0.25 1.00 16 12 O -0.38 -6.45 9.00 -35.23 -0.32 -6.77 16 13 C 0.11 1.70 0.68 -90.73 -0.06 1.64 16 14 C -0.15 -2.40 4.31 -26.64 -0.11 -2.51 16 15 C 0.12 1.73 6.18 -3.71 -0.02 1.70 16 16 N -0.60 -7.76 2.97 -172.76 -0.51 -8.27 16 17 C 0.52 7.34 7.06 -10.99 -0.08 7.26 16 18 O -0.52 -9.40 15.98 -14.05 -0.22 -9.63 16 19 C 0.04 0.43 2.40 -27.81 -0.07 0.36 16 20 H 0.09 0.90 7.34 -51.93 -0.38 0.51 16 21 C 0.03 0.30 5.95 37.23 0.22 0.52 16 22 O -0.37 -3.50 10.84 -48.81 -0.53 -4.03 16 23 C 0.02 0.14 7.05 37.23 0.26 0.41 16 24 C 0.02 0.18 7.05 37.23 0.26 0.44 16 25 O -0.35 -4.32 10.05 -62.41 -0.63 -4.95 16 26 C 0.10 1.10 5.11 -3.71 -0.02 1.08 16 27 C -0.12 -1.45 5.10 -26.63 -0.14 -1.59 16 28 C 0.13 2.57 5.35 -3.78 -0.02 2.55 16 29 H 0.27 7.93 6.97 -40.82 -0.28 7.64 16 30 H 0.02 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.08 2.03 6.47 -51.93 -0.34 1.70 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.05 0.87 6.29 -51.93 -0.33 0.54 16 34 H 0.10 1.78 6.16 -51.93 -0.32 1.46 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.37 7.04 -51.93 -0.37 1.00 16 37 H 0.07 1.03 7.83 -51.93 -0.41 0.63 16 38 H 0.12 0.90 5.78 -51.93 -0.30 0.60 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.66 4.51 -51.93 -0.23 0.42 16 45 H 0.08 0.90 7.82 -51.93 -0.41 0.49 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 49 H 0.02 0.46 8.13 -51.93 -0.42 0.04 16 LS Contribution 368.53 15.07 5.55 5.55 Total: -1.00 -33.16 368.53 -8.87 -42.03 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.63 Total: 1.70 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 0.24 Total: 5.06 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.23 Total: -48.47 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -1.70 Total: -25.37 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.50 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.16 -8.87 -42.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949306104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.146 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds