Wall clock time and date at job start Sat Apr 11 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99678 * 2 1 4 4 H 1.48495 * 109.47296 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47042 * 120.00126 * 3 2 1 6 6 H 1.48499 * 109.46942 * 239.99714 * 3 2 1 7 7 C 1.38810 * 119.99931 * 179.72474 * 2 1 3 8 8 H 1.08001 * 120.00011 * 212.99188 * 7 2 1 9 9 N 1.36931 * 120.00086 * 32.99150 * 7 2 1 10 10 C 1.47157 * 120.98836 * 23.67915 * 9 7 2 11 11 C 1.53297 * 108.37291 * 129.40593 * 10 9 7 12 12 O 1.42963 * 109.23245 * 52.35317 * 11 10 9 13 13 C 1.42902 * 114.20520 * 297.50712 * 12 11 10 14 14 C 1.52986 * 109.55775 * 302.52213 * 13 12 11 15 15 C 1.53196 * 109.34778 * 300.96320 * 14 13 12 16 16 N 1.46928 * 108.77752 * 305.42815 * 15 14 13 17 17 C 1.34773 * 120.64075 * 233.68908 * 16 15 14 18 18 O 1.21280 * 120.00202 * 354.64888 * 17 16 15 19 19 C 1.50698 * 119.99900 * 174.65038 * 17 16 15 20 20 H 1.09005 * 109.52719 * 311.29761 * 19 17 16 21 21 C 1.53144 * 109.52599 * 71.42607 * 19 17 16 22 22 O 1.43084 * 109.14477 * 175.14602 * 21 19 17 23 23 C 1.43069 * 113.65101 * 302.14759 * 22 21 19 24 24 C 1.53147 * 109.15224 * 57.91593 * 23 22 21 25 25 O 1.43069 * 109.52633 * 191.16267 * 19 17 16 26 26 C 1.46927 * 118.71566 * 53.66675 * 16 15 14 27 27 C 1.52997 * 109.55052 * 182.22342 * 13 12 11 28 28 C 1.47155 * 120.98694 * 203.39492 * 9 7 2 29 29 H 0.97004 * 119.99548 * 180.75335 * 1 2 3 30 30 H 1.09005 * 109.67931 * 249.12508 * 10 9 7 31 31 H 1.08993 * 109.68003 * 9.64242 * 10 9 7 32 32 H 1.09006 * 109.50548 * 172.27595 * 11 10 9 33 33 H 1.08997 * 109.51439 * 292.37132 * 11 10 9 34 34 H 1.09005 * 109.49288 * 60.92315 * 14 13 12 35 35 H 1.08998 * 109.49680 * 181.00113 * 14 13 12 36 36 H 1.09005 * 109.58906 * 185.63917 * 15 14 13 37 37 H 1.09002 * 109.58221 * 65.21760 * 15 14 13 38 38 H 1.09003 * 109.52343 * 295.11638 * 21 19 17 39 39 H 1.09001 * 109.52795 * 55.31115 * 21 19 17 40 40 H 1.09001 * 109.52522 * 298.01771 * 23 22 21 41 41 H 1.09002 * 109.53042 * 177.82108 * 23 22 21 42 42 H 1.08999 * 109.52612 * 184.78609 * 24 23 22 43 43 H 1.08997 * 109.57242 * 64.62245 * 24 23 22 44 44 H 1.09005 * 109.58643 * 186.54285 * 26 16 15 45 45 H 1.08998 * 109.58833 * 66.11886 * 26 16 15 46 46 H 1.08995 * 109.49621 * 178.99723 * 27 13 12 47 47 H 1.09000 * 109.48861 * 299.05242 * 27 13 12 48 48 H 1.08998 * 109.67717 * 350.20443 * 28 9 7 49 49 H 1.08993 * 109.67816 * 110.74397 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2021 0.0058 8 1 2.9596 -1.2751 0.5154 9 7 1.4912 -2.2955 -0.6347 10 6 0.5230 -2.1418 -1.7322 11 6 1.0066 -2.9767 -2.9235 12 8 1.2643 -4.3137 -2.4879 13 6 2.2996 -4.4217 -1.5089 14 6 3.5932 -3.8217 -2.0632 15 6 3.9913 -4.5666 -3.3413 16 7 4.0699 -6.0037 -3.0461 17 6 5.1845 -6.7043 -3.3349 18 8 6.0975 -6.1729 -3.9306 19 6 5.2963 -8.1480 -2.9175 20 1 5.0161 -8.2468 -1.8687 21 6 4.3632 -9.0037 -3.7792 22 8 4.5585 -10.3834 -3.4545 23 6 5.9058 -10.8301 -3.6337 24 6 6.8378 -9.9742 -2.7710 25 8 6.6436 -8.5946 -3.0967 26 6 2.9102 -6.6622 -2.4296 27 6 2.5239 -5.8947 -1.1613 28 6 1.8897 -3.6588 -0.2500 29 1 -0.4850 -0.8400 0.0110 30 1 -0.4565 -2.4950 -1.4098 31 1 0.4584 -1.0927 -2.0204 32 1 0.2380 -2.9873 -3.6964 33 1 1.9213 -2.5414 -3.3258 34 1 3.4368 -2.7672 -2.2906 35 1 4.3867 -3.9206 -1.3225 36 1 4.9627 -4.2103 -3.6844 37 1 3.2423 -4.3926 -4.1139 38 1 3.3279 -8.7250 -3.5823 39 1 4.5906 -8.8426 -4.8329 40 1 6.1863 -10.7302 -4.6823 41 1 5.9867 -11.8743 -3.3319 42 1 7.8733 -10.2526 -2.9667 43 1 6.6102 -10.1353 -1.7172 44 1 3.1680 -7.6893 -2.1708 45 1 2.0736 -6.6583 -3.1282 46 1 3.3259 -5.9773 -0.4278 47 1 1.6072 -6.3142 -0.7468 48 1 2.7315 -3.6140 0.4409 49 1 1.0504 -4.1660 0.2257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949306104.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:52 Heat of formation + Delta-G solvation = -148.703545 kcal Electronic energy + Delta-G solvation = -32084.840745 eV Core-core repulsion = 27819.597123 eV Total energy + Delta-G solvation = -4265.243623 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06559 -41.06712 -39.90052 -37.75889 -37.04032 -36.38504 -34.23119 -33.32293 -32.90942 -31.80896 -30.20550 -29.21460 -28.02987 -26.29317 -25.22964 -24.80706 -24.35488 -23.00782 -22.26394 -20.96994 -20.11431 -19.46065 -18.75768 -17.99993 -17.80748 -17.14641 -16.93284 -16.90273 -16.70253 -16.38563 -16.02424 -15.94035 -15.76070 -15.72382 -15.44884 -15.36735 -14.65930 -14.55345 -14.43321 -14.15382 -14.11440 -13.62316 -13.50350 -13.16975 -12.99643 -12.94288 -12.71623 -12.61575 -12.45667 -12.26549 -11.99648 -11.96245 -11.93789 -11.85589 -11.78195 -11.57795 -11.09709 -10.88873 -10.74685 -10.33511 -10.31316 -9.79209 -8.91376 -8.39525 -5.36076 1.30308 1.55992 1.56523 1.62197 1.81651 2.57901 2.60603 2.69984 2.79051 3.12047 3.27332 3.39421 3.42606 3.69232 3.72893 3.80476 3.84104 3.93942 4.01726 4.10625 4.20081 4.21370 4.24955 4.30520 4.36643 4.44919 4.46777 4.51211 4.61030 4.64201 4.69503 4.73746 4.77377 4.79527 4.80855 4.88821 4.89737 4.99630 5.07265 5.19608 5.23500 5.42560 5.78403 5.83445 5.84533 6.24669 6.28637 6.31855 6.94698 6.95740 7.72077 8.16845 8.92464 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.025031 B = 0.002747 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.340467 B =10190.533216 C =10598.585843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.069 4.069 3 Si 1.108 2.892 4 H -0.292 1.292 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.361 4.361 8 H 0.050 0.950 9 N -0.614 5.614 10 C 0.124 3.876 11 C 0.055 3.945 12 O -0.372 6.372 13 C 0.111 3.889 14 C -0.140 4.140 15 C 0.128 3.872 16 N -0.598 5.598 17 C 0.521 3.479 18 O -0.569 6.569 19 C 0.043 3.957 20 H 0.115 0.885 21 C 0.038 3.962 22 O -0.380 6.380 23 C 0.017 3.983 24 C 0.017 3.983 25 O -0.385 6.385 26 C 0.106 3.894 27 C -0.115 4.115 28 C 0.125 3.875 29 H 0.254 0.746 30 H 0.007 0.993 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.137 0.863 42 H 0.127 0.873 43 H 0.076 0.924 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.100 0.900 48 H 0.055 0.945 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.224 -23.039 -7.049 25.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.267 4.267 3 Si 0.933 3.067 4 H -0.218 1.218 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.490 4.490 8 H 0.068 0.932 9 N -0.339 5.339 10 C -0.002 4.002 11 C -0.023 4.023 12 O -0.291 6.291 13 C 0.071 3.929 14 C -0.178 4.178 15 C 0.006 3.994 16 N -0.331 5.331 17 C 0.308 3.692 18 O -0.447 6.447 19 C -0.018 4.018 20 H 0.132 0.868 21 C -0.040 4.040 22 O -0.299 6.299 23 C -0.059 4.059 24 C -0.059 4.059 25 O -0.305 6.305 26 C -0.015 4.015 27 C -0.153 4.153 28 C 0.000 4.000 29 H 0.064 0.936 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.128 0.872 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.154 0.846 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.094 0.906 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.119 0.881 48 H 0.074 0.926 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 8.457 -21.270 -7.410 24.059 hybrid contribution 0.126 -0.697 0.509 0.872 sum 8.583 -21.966 -6.901 24.573 Atomic orbital electron populations 1.70954 1.07615 1.29237 1.49423 1.27001 0.96237 1.04525 0.98902 0.82931 0.74068 0.72402 0.77314 1.21793 1.20390 1.20648 1.20046 1.02506 0.91105 1.35369 0.93205 1.44309 1.51479 1.01481 1.36678 1.21471 0.91087 0.98850 0.88779 1.22999 1.00477 0.82975 0.95803 1.87796 1.55829 1.26704 1.58785 1.21726 0.86457 0.96249 0.88518 1.22221 0.97592 1.00276 0.97729 1.21397 1.02013 0.79223 0.96776 1.48098 1.14754 1.09437 1.60853 1.20431 0.81589 0.88310 0.78833 1.90693 1.40097 1.71944 1.42004 1.22602 0.85905 0.91022 1.02319 0.86788 1.23313 1.00880 0.81628 0.98138 1.88119 1.28761 1.24291 1.88680 1.23517 0.81561 1.00713 1.00119 1.23626 1.02553 0.79689 1.00009 1.88189 1.25395 1.27709 1.89160 1.22119 0.87759 0.96876 0.94765 1.21912 1.03779 0.91375 0.98244 1.21578 0.97577 0.85481 0.95411 0.93646 0.97480 0.92913 0.87172 0.93160 0.91427 0.91692 0.90640 0.90511 0.84630 0.92238 0.92028 0.84552 0.85502 0.90581 0.86596 0.88897 0.89297 0.88136 0.92609 0.96338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 12.62 21.65 0.27 -55.60 16 2 C -0.07 -3.86 4.49 84.86 0.38 -3.48 16 3 Si 1.11 50.40 30.03 68.60 2.06 52.46 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.36 -19.76 9.49 84.03 0.80 -18.96 16 8 H 0.05 2.77 7.99 -2.91 -0.02 2.74 16 9 N -0.61 -29.70 2.44 -698.48 -1.71 -31.41 16 10 C 0.12 5.63 5.00 86.35 0.43 6.06 16 11 C 0.06 1.92 6.60 72.08 0.48 2.40 16 12 O -0.37 -11.92 9.00 -148.98 -1.34 -13.26 16 13 C 0.11 3.42 0.68 -10.86 -0.01 3.41 16 14 C -0.14 -4.41 4.31 30.65 0.13 -4.28 16 15 C 0.13 3.59 6.18 86.36 0.53 4.12 16 16 N -0.60 -14.13 2.97 -818.88 -2.43 -16.57 16 17 C 0.52 13.83 7.06 87.66 0.62 14.45 16 18 O -0.57 -20.52 15.98 15.72 0.25 -20.27 16 19 C 0.04 0.84 2.40 29.90 0.07 0.91 16 20 H 0.11 1.75 7.34 -2.38 -0.02 1.73 16 21 C 0.04 0.59 5.95 72.03 0.43 1.02 16 22 O -0.38 -5.86 10.84 -136.00 -1.47 -7.34 16 23 C 0.02 0.19 7.05 72.03 0.51 0.70 16 24 C 0.02 0.22 7.05 72.03 0.51 0.73 16 25 O -0.39 -8.84 10.05 -123.00 -1.24 -10.08 16 26 C 0.11 1.85 5.11 86.36 0.44 2.29 16 27 C -0.11 -2.45 5.10 30.66 0.16 -2.30 16 28 C 0.13 4.95 5.35 86.19 0.46 5.41 16 29 H 0.25 15.57 6.97 -92.71 -0.65 14.93 16 30 H 0.01 0.35 7.90 -2.38 -0.02 0.33 16 31 H 0.05 2.69 6.47 -2.39 -0.02 2.68 16 32 H 0.11 3.23 8.14 -2.38 -0.02 3.21 16 33 H 0.05 1.76 6.29 -2.39 -0.02 1.75 16 34 H 0.07 2.53 6.16 -2.38 -0.01 2.52 16 35 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.34 7.04 -2.38 -0.02 2.32 16 37 H 0.08 2.09 7.83 -2.39 -0.02 2.07 16 38 H 0.14 1.53 5.78 -2.39 -0.01 1.51 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.13 1.16 8.14 -2.39 -0.02 1.15 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.12 1.29 4.51 -2.38 -0.01 1.28 16 45 H 0.09 1.56 7.82 -2.39 -0.02 1.55 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 47 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.06 2.23 7.93 -2.39 -0.02 2.21 16 49 H 0.02 0.76 8.13 -2.39 -0.02 0.74 16 Total: -1.00 -74.66 368.53 1.41 -73.25 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.08 Total: 16.32 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.94 Total: 12.50 kcal Atomic # 7 Polarization: -99.71 SS G_CDS: -3.87 Total: -103.57 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -3.80 Total: -50.95 kcal Atomic # 14 Polarization: 50.40 SS G_CDS: 2.06 Total: 52.46 kcal Total: -74.66 1.41 -73.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949306104.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.455 kcal (2) G-P(sol) polarization free energy of solvation -74.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds