Wall clock time and date at job start Sat Apr 11 2020 06:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99834 * 2 1 4 4 H 1.07999 * 119.99622 * 148.90954 * 3 2 1 5 5 C 1.38813 * 119.99798 * 328.90248 * 3 2 1 6 6 N 1.31617 * 119.99353 * 153.33912 * 5 3 2 7 7 Si 1.86791 * 120.00261 * 333.34259 * 5 3 2 8 8 H 1.48506 * 109.47503 * 94.67894 * 7 5 3 9 9 H 1.48500 * 109.47270 * 214.67689 * 7 5 3 10 10 H 1.48506 * 109.47171 * 334.67781 * 7 5 3 11 11 C 1.46503 * 120.00111 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.88687 * 182.42325 * 11 2 1 13 13 C 1.55160 * 111.00232 * 306.34600 * 11 2 1 14 14 C 1.54332 * 103.01704 * 153.38059 * 13 11 2 15 15 N 1.47016 * 107.27129 * 338.14497 * 14 13 11 16 16 C 1.34776 * 125.65140 * 178.84950 * 15 14 13 17 17 O 1.21633 * 119.99830 * 179.68697 * 16 15 14 18 18 C 1.47307 * 119.99889 * 359.68919 * 16 15 14 19 19 C 1.36445 * 126.18940 * 179.97438 * 18 16 15 20 20 N 1.36135 * 106.76361 * 180.02562 * 19 18 16 21 21 C 1.40215 * 126.21675 * 179.97438 * 20 19 18 22 22 C 1.38831 * 120.06541 * 359.72707 * 21 20 19 23 23 C 1.38123 * 119.93159 * 179.76523 * 22 21 20 24 24 C 1.38275 * 120.06851 * 0.50770 * 23 22 21 25 25 C 1.38282 * 120.13003 * 359.74557 * 24 23 22 26 26 C 1.38125 * 120.06476 * 359.97438 * 25 24 23 27 27 C 1.36105 * 107.56495 * 0.24375 * 20 19 18 28 28 N 1.30156 * 109.00507 * 359.59177 * 27 20 19 29 29 C 1.47429 * 108.70204 * 358.58029 * 15 14 13 30 30 H 1.08995 * 109.46798 * 275.59426 * 1 2 3 31 31 H 1.08991 * 109.47042 * 35.59749 * 1 2 3 32 32 H 1.09004 * 109.46631 * 155.59744 * 1 2 3 33 33 H 0.97007 * 119.99701 * 180.02562 * 6 5 3 34 34 H 1.08999 * 110.72289 * 271.94038 * 13 11 2 35 35 H 1.09004 * 110.71971 * 35.03966 * 13 11 2 36 36 H 1.08999 * 109.99122 * 218.66585 * 14 13 11 37 37 H 1.09004 * 109.77689 * 97.50252 * 14 13 11 38 38 H 1.08008 * 126.61915 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.03046 * 359.97438 * 22 21 20 40 40 H 1.08003 * 119.96620 * 180.25198 * 23 22 21 41 41 H 1.07992 * 119.93740 * 179.76361 * 24 23 22 42 42 H 1.07994 * 119.96722 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.03372 * 179.97438 * 26 25 24 44 44 H 1.07999 * 125.49683 * 179.73772 * 27 20 19 45 45 H 1.08997 * 110.37007 * 143.19229 * 29 15 14 46 46 H 1.09001 * 110.36843 * 265.52303 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1133 1.2531 0.4830 5 6 1.6052 2.3017 -0.6209 6 7 1.9371 3.5086 -0.2142 7 14 0.4014 2.0902 -2.0335 8 1 -0.9879 2.1341 -1.5108 9 1 0.5950 3.1857 -3.0171 10 1 0.6401 0.7825 -2.6957 11 6 2.1976 -1.2687 -0.0006 12 1 3.2730 -1.0966 0.0426 13 6 1.7322 -2.1801 1.1657 14 6 2.0327 -3.5993 0.6391 15 7 2.0993 -3.5158 -0.8271 16 6 2.3643 -4.5409 -1.6611 17 8 2.3883 -4.3563 -2.8631 18 6 2.6248 -5.8847 -1.1169 19 6 2.9044 -7.0069 -1.8410 20 7 3.0744 -8.0190 -0.9466 21 6 3.3770 -9.3534 -1.2532 22 6 3.5252 -9.7466 -2.5763 23 6 3.8281 -11.0607 -2.8750 24 6 3.9732 -11.9865 -1.8582 25 6 3.8209 -11.5990 -0.5396 26 6 3.5237 -10.2850 -0.2344 27 6 2.8915 -7.5016 0.2989 28 7 2.6295 -6.2309 0.1957 29 6 1.8216 -2.1264 -1.2346 30 1 -0.3633 0.1002 1.0227 31 1 -0.3633 0.8356 -0.5981 32 1 -0.3633 -0.9359 -0.4246 33 1 1.5563 4.2884 -0.6478 34 1 2.3047 -1.9723 2.0697 35 1 0.6650 -2.0561 1.3498 36 1 1.2374 -4.2831 0.9358 37 1 2.9880 -3.9448 1.0345 38 1 2.9768 -7.0784 -2.9162 39 1 3.4073 -9.0249 -3.3711 40 1 3.9476 -11.3664 -3.9039 41 1 4.2061 -13.0143 -2.0943 42 1 3.9344 -12.3243 0.2524 43 1 3.4045 -9.9829 0.7956 44 1 2.9559 -8.0556 1.2238 45 1 2.4388 -1.8513 -2.0899 46 1 0.7651 -2.0050 -1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971579224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:38 Heat of formation + Delta-G solvation = 106.571570 kcal Electronic energy + Delta-G solvation = -28421.292708 eV Core-core repulsion = 24506.720316 eV Total energy + Delta-G solvation = -3914.572392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76908 -39.81397 -39.26107 -37.37593 -34.95653 -34.53468 -31.88868 -31.77531 -30.28977 -30.21775 -29.58726 -28.07538 -26.21433 -24.85530 -23.99300 -23.34563 -22.34231 -21.47799 -21.24770 -19.59109 -19.32057 -18.46990 -17.01218 -16.96839 -16.28145 -16.22354 -15.94359 -15.69934 -15.40177 -15.00414 -14.82886 -14.55544 -14.10297 -13.94519 -13.87682 -13.61147 -13.31861 -13.19534 -12.67999 -12.44041 -12.32889 -12.28410 -12.23988 -11.87407 -11.75761 -11.58146 -11.09357 -10.83042 -10.74836 -10.49825 -10.43512 -10.03837 -9.90676 -9.84657 -9.69494 -9.48677 -9.20628 -8.78191 -8.46779 -8.22646 -6.93250 -6.00217 -3.33762 0.26917 0.65701 1.59241 2.10582 2.22973 3.15741 3.26451 3.34373 3.51681 3.56752 3.57585 4.00101 4.09819 4.16533 4.33405 4.49965 4.54463 4.62254 4.69846 4.80706 4.91474 5.06092 5.09827 5.20944 5.27090 5.34562 5.37025 5.52596 5.63825 5.69122 5.81524 5.83417 5.84039 5.91210 6.05200 6.11761 6.20422 6.25511 6.33659 6.44879 6.50348 6.60317 6.68438 6.74789 6.77257 6.88454 7.44219 7.84044 7.98870 8.33811 8.40274 8.95367 9.71045 10.07781 11.15277 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.002083 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.741066 B =13435.709935 C =13972.250066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.595 5.595 3 C -0.271 4.271 4 H 0.084 0.916 5 C 0.034 3.966 6 N -0.894 5.894 7 Si 0.878 3.122 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.270 1.270 11 C 0.172 3.828 12 H 0.087 0.913 13 C -0.153 4.153 14 C 0.119 3.881 15 N -0.598 5.598 16 C 0.609 3.391 17 O -0.550 6.550 18 C -0.037 4.037 19 C 0.028 3.972 20 N -0.411 5.411 21 C 0.133 3.867 22 C -0.132 4.132 23 C -0.091 4.091 24 C -0.127 4.127 25 C -0.092 4.092 26 C -0.132 4.132 27 C 0.191 3.809 28 N -0.447 5.447 29 C 0.082 3.918 30 H 0.022 0.978 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.191 0.809 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.130 0.870 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.214 0.786 45 H 0.076 0.924 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.044 -34.081 0.508 34.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.316 5.316 3 C -0.399 4.399 4 H 0.102 0.898 5 C -0.166 4.166 6 N -0.535 5.535 7 Si 0.709 3.291 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.195 1.195 11 C 0.062 3.938 12 H 0.105 0.895 13 C -0.192 4.192 14 C -0.004 4.004 15 N -0.330 5.330 16 C 0.396 3.604 17 O -0.429 6.429 18 C -0.165 4.165 19 C -0.106 4.106 20 N -0.089 5.089 21 C 0.041 3.959 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.145 4.145 25 C -0.111 4.111 26 C -0.151 4.151 27 C -0.092 4.092 28 N -0.165 5.165 29 C -0.042 4.042 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.208 0.792 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.148 0.852 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.230 0.770 45 H 0.094 0.906 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.913 -33.250 0.464 33.380 hybrid contribution -0.625 -0.621 -1.432 1.681 sum 2.289 -33.870 -0.968 33.961 Atomic orbital electron populations 1.21341 0.84593 0.98718 0.98887 1.44050 1.00620 1.01360 1.85607 1.18812 1.05381 0.85077 1.30671 0.89837 1.25316 0.98256 0.95024 0.98045 1.69917 1.45807 0.97572 1.40186 0.86980 0.80431 0.77412 0.84249 1.21460 1.23098 1.19535 1.21605 0.96936 0.85076 0.90150 0.89464 1.23200 1.02380 0.93562 1.00093 1.22012 1.01960 0.97474 0.78936 1.48242 1.67669 1.09104 1.07935 1.16474 0.77195 0.81695 0.84997 1.90800 1.54169 1.83753 1.14129 1.20641 1.11495 0.94706 0.89618 1.22696 1.04466 0.86464 0.97011 1.43101 1.50872 1.06726 1.08233 1.17890 1.01434 0.81774 0.94829 1.20996 1.02244 0.97665 0.94248 1.21091 0.97692 0.92091 1.00128 1.21304 1.00300 1.00150 0.92749 1.21067 0.97890 0.95057 0.97078 1.20872 1.02792 0.93021 0.98434 1.25350 1.04419 0.90735 0.88656 1.70804 1.16890 1.10573 1.18197 1.23163 1.01076 0.79086 1.00897 0.95930 0.94284 0.94544 0.92666 0.90298 0.90908 0.91503 0.91057 0.79217 0.84840 0.84813 0.85212 0.84787 0.84834 0.76956 0.90571 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.40 8.37 59.85 0.50 2.91 16 2 N -0.59 -14.15 2.62 -171.03 -0.45 -14.60 16 3 C -0.27 -7.58 9.89 -15.06 -0.15 -7.73 16 4 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 5 C 0.03 1.00 5.29 -17.43 -0.09 0.91 16 6 N -0.89 -27.34 13.97 55.49 0.78 -26.56 16 7 Si 0.88 22.68 25.10 -169.99 -4.27 18.41 16 8 H -0.29 -7.15 6.60 56.52 0.37 -6.78 16 9 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 10 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.17 3.44 3.54 -65.78 -0.23 3.21 16 12 H 0.09 1.79 7.96 -51.93 -0.41 1.38 16 13 C -0.15 -2.50 6.51 -24.89 -0.16 -2.66 16 14 C 0.12 1.81 5.52 -3.06 -0.02 1.80 16 15 N -0.60 -10.58 3.33 -171.82 -0.57 -11.15 16 16 C 0.61 10.89 7.84 -12.57 -0.10 10.79 16 17 O -0.55 -11.27 17.14 5.25 0.09 -11.18 16 18 C -0.04 -0.54 6.81 -83.09 -0.57 -1.11 16 19 C 0.03 0.33 10.57 -16.29 -0.17 0.16 16 20 N -0.41 -3.88 2.97 -61.90 -0.18 -4.06 16 21 C 0.13 0.99 6.63 -83.58 -0.55 0.44 16 22 C -0.13 -0.87 9.46 -39.40 -0.37 -1.24 16 23 C -0.09 -0.45 10.04 -39.61 -0.40 -0.85 16 24 C -0.13 -0.53 10.04 -39.55 -0.40 -0.93 16 25 C -0.09 -0.39 10.04 -39.61 -0.40 -0.79 16 26 C -0.13 -0.71 9.46 -39.41 -0.37 -1.09 16 27 C 0.19 1.79 11.88 -89.68 -1.07 0.72 16 28 N -0.45 -5.76 8.75 -10.97 -0.10 -5.85 16 29 C 0.08 1.61 6.46 -2.53 -0.02 1.60 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.94 2.54 -51.93 -0.13 0.81 16 32 H 0.04 0.71 6.33 -51.93 -0.33 0.38 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.19 7.07 -51.93 -0.37 0.83 16 36 H 0.07 0.97 7.75 -51.93 -0.40 0.57 16 37 H 0.07 1.05 7.61 -51.93 -0.40 0.65 16 38 H 0.19 1.88 7.11 -52.48 -0.37 1.51 16 39 H 0.13 0.79 6.78 -52.48 -0.36 0.43 16 40 H 0.13 0.39 8.06 -52.48 -0.42 -0.04 16 41 H 0.13 0.27 8.06 -52.49 -0.42 -0.16 16 42 H 0.13 0.26 8.06 -52.49 -0.42 -0.16 16 43 H 0.13 0.46 6.74 -52.49 -0.35 0.11 16 44 H 0.21 1.07 7.03 -52.49 -0.37 0.70 16 45 H 0.08 1.61 8.04 -51.93 -0.42 1.20 16 46 H 0.07 1.32 6.34 -51.93 -0.33 1.00 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -35.09 371.17 -9.61 -44.69 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -5.94 Total: -1.45 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -4.56 Total: 6.15 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.52 Total: -62.22 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.27 Total: 18.41 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.09 -9.61 -44.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971579224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.266 kcal (2) G-P(sol) polarization free energy of solvation -35.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds