Wall clock time and date at job start Sat Apr 11 2020 06:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 119.99834 * 2 1 4 4 H 1.07999 * 119.99622 * 148.90954 * 3 2 1 5 5 C 1.38813 * 119.99798 * 328.90248 * 3 2 1 6 6 N 1.31617 * 119.99353 * 153.33912 * 5 3 2 7 7 Si 1.86791 * 120.00261 * 333.34259 * 5 3 2 8 8 H 1.48506 * 109.47503 * 94.67894 * 7 5 3 9 9 H 1.48500 * 109.47270 * 214.67689 * 7 5 3 10 10 H 1.48506 * 109.47171 * 334.67781 * 7 5 3 11 11 C 1.46503 * 120.00111 * 180.02562 * 2 1 3 12 12 H 1.08998 * 110.88687 * 182.42325 * 11 2 1 13 13 C 1.55160 * 111.00232 * 306.34600 * 11 2 1 14 14 C 1.54332 * 103.01704 * 153.38059 * 13 11 2 15 15 N 1.47016 * 107.27129 * 338.14497 * 14 13 11 16 16 C 1.34776 * 125.65140 * 178.84950 * 15 14 13 17 17 O 1.21633 * 119.99830 * 179.68697 * 16 15 14 18 18 C 1.47307 * 119.99889 * 359.68919 * 16 15 14 19 19 C 1.36445 * 126.18940 * 179.97438 * 18 16 15 20 20 N 1.36135 * 106.76361 * 180.02562 * 19 18 16 21 21 C 1.40215 * 126.21675 * 179.97438 * 20 19 18 22 22 C 1.38831 * 120.06541 * 359.72707 * 21 20 19 23 23 C 1.38123 * 119.93159 * 179.76523 * 22 21 20 24 24 C 1.38275 * 120.06851 * 0.50770 * 23 22 21 25 25 C 1.38282 * 120.13003 * 359.74557 * 24 23 22 26 26 C 1.38125 * 120.06476 * 359.97438 * 25 24 23 27 27 C 1.36105 * 107.56495 * 0.24375 * 20 19 18 28 28 N 1.30156 * 109.00507 * 359.59177 * 27 20 19 29 29 C 1.47429 * 108.70204 * 358.58029 * 15 14 13 30 30 H 1.08995 * 109.46798 * 275.59426 * 1 2 3 31 31 H 1.08991 * 109.47042 * 35.59749 * 1 2 3 32 32 H 1.09004 * 109.46631 * 155.59744 * 1 2 3 33 33 H 0.97007 * 119.99701 * 180.02562 * 6 5 3 34 34 H 1.08999 * 110.72289 * 271.94038 * 13 11 2 35 35 H 1.09004 * 110.71971 * 35.03966 * 13 11 2 36 36 H 1.08999 * 109.99122 * 218.66585 * 14 13 11 37 37 H 1.09004 * 109.77689 * 97.50252 * 14 13 11 38 38 H 1.08008 * 126.61915 * 0.02562 * 19 18 16 39 39 H 1.08003 * 120.03046 * 359.97438 * 22 21 20 40 40 H 1.08003 * 119.96620 * 180.25198 * 23 22 21 41 41 H 1.07992 * 119.93740 * 179.76361 * 24 23 22 42 42 H 1.07994 * 119.96722 * 179.97438 * 25 24 23 43 43 H 1.07999 * 120.03372 * 179.97438 * 26 25 24 44 44 H 1.07999 * 125.49683 * 179.73772 * 27 20 19 45 45 H 1.08997 * 110.37007 * 143.19229 * 29 15 14 46 46 H 1.09001 * 110.36843 * 265.52303 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1133 1.2531 0.4830 5 6 1.6052 2.3017 -0.6209 6 7 1.9371 3.5086 -0.2142 7 14 0.4014 2.0902 -2.0335 8 1 -0.9879 2.1341 -1.5108 9 1 0.5950 3.1857 -3.0171 10 1 0.6401 0.7825 -2.6957 11 6 2.1976 -1.2687 -0.0006 12 1 3.2730 -1.0966 0.0426 13 6 1.7322 -2.1801 1.1657 14 6 2.0327 -3.5993 0.6391 15 7 2.0993 -3.5158 -0.8271 16 6 2.3643 -4.5409 -1.6611 17 8 2.3883 -4.3563 -2.8631 18 6 2.6248 -5.8847 -1.1169 19 6 2.9044 -7.0069 -1.8410 20 7 3.0744 -8.0190 -0.9466 21 6 3.3770 -9.3534 -1.2532 22 6 3.5252 -9.7466 -2.5763 23 6 3.8281 -11.0607 -2.8750 24 6 3.9732 -11.9865 -1.8582 25 6 3.8209 -11.5990 -0.5396 26 6 3.5237 -10.2850 -0.2344 27 6 2.8915 -7.5016 0.2989 28 7 2.6295 -6.2309 0.1957 29 6 1.8216 -2.1264 -1.2346 30 1 -0.3633 0.1002 1.0227 31 1 -0.3633 0.8356 -0.5981 32 1 -0.3633 -0.9359 -0.4246 33 1 1.5563 4.2884 -0.6478 34 1 2.3047 -1.9723 2.0697 35 1 0.6650 -2.0561 1.3498 36 1 1.2374 -4.2831 0.9358 37 1 2.9880 -3.9448 1.0345 38 1 2.9768 -7.0784 -2.9162 39 1 3.4073 -9.0249 -3.3711 40 1 3.9476 -11.3664 -3.9039 41 1 4.2061 -13.0143 -2.0943 42 1 3.9344 -12.3243 0.2524 43 1 3.4045 -9.9829 0.7956 44 1 2.9559 -8.0556 1.2238 45 1 2.4388 -1.8513 -2.0899 46 1 0.7651 -2.0050 -1.4733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971579224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:37 Heat of formation + Delta-G solvation = 86.248778 kcal Electronic energy + Delta-G solvation = -28422.173971 eV Core-core repulsion = 24506.720316 eV Total energy + Delta-G solvation = -3915.453655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.55882 -40.97163 -39.95173 -38.91536 -36.67362 -35.26518 -33.79356 -32.30402 -31.75774 -30.92152 -30.46466 -29.47141 -28.11761 -26.19745 -24.56500 -24.48159 -23.68879 -22.40196 -21.91323 -21.00116 -20.42909 -19.40467 -19.02149 -17.86369 -17.84860 -17.07074 -17.05371 -16.75835 -16.48565 -15.91940 -15.70412 -15.53157 -15.30656 -15.11757 -14.71535 -14.68652 -14.48608 -14.36772 -14.30111 -14.08769 -13.85768 -13.73355 -13.46656 -13.25708 -12.66125 -12.55297 -12.41050 -12.29142 -12.09182 -12.04176 -11.79821 -11.59308 -11.48938 -11.41241 -11.15086 -10.60256 -10.07187 -10.03034 -9.67204 -9.34433 -8.90175 -8.23413 -5.53101 -0.27874 0.31293 0.69374 1.27362 1.39044 1.41225 1.43962 1.51102 1.97022 2.37291 2.39347 2.77169 2.99185 3.18087 3.29965 3.51836 3.63710 3.79768 3.86390 3.90404 4.05996 4.12014 4.18216 4.23830 4.29850 4.38249 4.41220 4.43511 4.52562 4.65131 4.66296 4.75883 4.78787 4.95208 4.96071 4.98528 5.00098 5.09134 5.22222 5.27788 5.36854 5.38730 5.41490 5.50947 5.77535 5.86996 6.10933 6.12851 6.46144 6.62179 6.90066 7.06136 7.58757 7.98110 8.96269 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.002083 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.741066 B =13435.709935 C =13972.250066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.606 5.606 3 C -0.260 4.260 4 H 0.054 0.946 5 C -0.019 4.019 6 N -0.939 5.939 7 Si 0.939 3.061 8 H -0.270 1.270 9 H -0.310 1.310 10 H -0.271 1.271 11 C 0.167 3.833 12 H 0.074 0.926 13 C -0.138 4.138 14 C 0.132 3.868 15 N -0.602 5.602 16 C 0.604 3.396 17 O -0.589 6.589 18 C -0.071 4.071 19 C 0.037 3.963 20 N -0.403 5.403 21 C 0.101 3.899 22 C -0.147 4.147 23 C -0.100 4.100 24 C -0.123 4.123 25 C -0.095 4.095 26 C -0.131 4.131 27 C 0.206 3.794 28 N -0.473 5.473 29 C 0.091 3.909 30 H 0.035 0.965 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.264 0.736 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.198 0.802 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.155 0.845 44 H 0.257 0.743 45 H 0.051 0.949 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.471 -38.491 1.635 38.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.329 5.329 3 C -0.390 4.390 4 H 0.071 0.929 5 C -0.216 4.216 6 N -0.583 5.583 7 Si 0.769 3.231 8 H -0.197 1.197 9 H -0.239 1.239 10 H -0.196 1.196 11 C 0.059 3.941 12 H 0.092 0.908 13 C -0.177 4.177 14 C 0.010 3.990 15 N -0.333 5.333 16 C 0.394 3.606 17 O -0.470 6.470 18 C -0.198 4.198 19 C -0.100 4.100 20 N -0.080 5.080 21 C 0.010 3.990 22 C -0.167 4.167 23 C -0.118 4.118 24 C -0.141 4.141 25 C -0.113 4.113 26 C -0.150 4.150 27 C -0.077 4.077 28 N -0.191 5.191 29 C -0.034 4.034 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.215 0.785 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.171 0.829 42 H 0.179 0.821 43 H 0.173 0.827 44 H 0.273 0.727 45 H 0.070 0.930 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.332 -37.740 1.615 37.846 hybrid contribution -0.326 0.480 -1.743 1.837 sum 2.006 -37.260 -0.128 37.314 Atomic orbital electron populations 1.21399 0.83322 0.99364 0.99544 1.44101 1.01514 1.01264 1.85984 1.18748 1.04366 0.86701 1.29162 0.92859 1.25860 1.00849 0.94767 1.00086 1.70015 1.48298 0.98332 1.41679 0.85985 0.79379 0.76706 0.81000 1.19703 1.23888 1.19573 1.21647 0.96084 0.84276 0.92128 0.90770 1.23092 1.02822 0.92922 0.98868 1.22012 1.02950 0.96773 0.77266 1.48282 1.67844 1.08166 1.09018 1.16985 0.76168 0.82862 0.84575 1.90758 1.55870 1.84629 1.15749 1.20187 1.14945 0.93578 0.91079 1.22777 1.03116 0.86451 0.97664 1.43176 1.49795 1.07204 1.07797 1.18169 1.03919 0.81033 0.95864 1.21166 1.02761 0.98555 0.94177 1.21362 0.97454 0.91567 1.01450 1.21697 0.98647 1.01129 0.92663 1.21454 0.96880 0.95077 0.97897 1.21198 1.01750 0.93060 0.98973 1.26164 1.01792 0.89904 0.89844 1.70696 1.18666 1.12509 1.17236 1.22816 1.00193 0.80681 0.99690 0.94647 0.96031 0.91851 0.92713 0.88977 0.90256 0.90048 0.90213 0.78522 0.85227 0.83221 0.82855 0.82122 0.82721 0.72696 0.93025 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.59 8.37 127.77 1.07 5.65 16 2 N -0.61 -28.79 2.62 -695.01 -1.82 -30.61 16 3 C -0.26 -14.87 9.89 84.03 0.83 -14.04 16 4 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 5 C -0.02 -1.10 5.29 84.86 0.45 -0.65 16 6 N -0.94 -59.01 13.97 21.65 0.30 -58.71 16 7 Si 0.94 47.71 25.10 68.60 1.72 49.43 16 8 H -0.27 -12.87 6.60 99.48 0.66 -12.21 16 9 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 10 H -0.27 -13.61 7.11 99.48 0.71 -12.90 16 11 C 0.17 6.68 3.54 46.38 0.16 6.84 16 12 H 0.07 3.13 7.96 -2.39 -0.02 3.11 16 13 C -0.14 -4.27 6.51 31.79 0.21 -4.06 16 14 C 0.13 3.81 5.52 86.73 0.48 4.29 16 15 N -0.60 -21.21 3.33 -815.76 -2.71 -23.93 16 16 C 0.60 21.93 7.84 86.63 0.68 22.61 16 17 O -0.59 -24.97 17.14 -4.14 -0.07 -25.05 16 18 C -0.07 -2.05 6.81 40.51 0.28 -1.77 16 19 C 0.04 0.85 10.57 83.61 0.88 1.73 16 20 N -0.40 -6.85 2.97 -349.76 -1.04 -7.89 16 21 C 0.10 1.29 6.63 38.08 0.25 1.55 16 22 C -0.15 -1.73 9.46 22.38 0.21 -1.52 16 23 C -0.10 -0.76 10.04 22.25 0.22 -0.54 16 24 C -0.12 -0.61 10.04 22.29 0.22 -0.39 16 25 C -0.09 -0.44 10.04 22.25 0.22 -0.21 16 26 C -0.13 -0.97 9.46 22.38 0.21 -0.75 16 27 C 0.21 3.28 11.88 180.02 2.14 5.42 16 28 N -0.47 -11.33 8.75 -188.64 -1.65 -12.99 16 29 C 0.09 3.63 6.46 86.86 0.56 4.19 16 30 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.02 1.01 2.54 -2.39 -0.01 1.00 16 32 H 0.06 2.34 6.33 -2.38 -0.02 2.33 16 33 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.08 2.40 7.07 -2.39 -0.02 2.38 16 36 H 0.08 2.17 7.75 -2.39 -0.02 2.15 16 37 H 0.08 2.20 7.61 -2.38 -0.02 2.18 16 38 H 0.20 3.98 7.11 -2.91 -0.02 3.96 16 39 H 0.13 1.50 6.78 -2.91 -0.02 1.48 16 40 H 0.15 0.55 8.06 -2.91 -0.02 0.52 16 41 H 0.15 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.16 -0.14 8.06 -2.91 -0.02 -0.16 16 43 H 0.16 0.37 6.74 -2.91 -0.02 0.35 16 44 H 0.26 1.41 7.03 -2.91 -0.02 1.39 16 45 H 0.05 2.27 8.04 -2.39 -0.02 2.25 16 46 H 0.06 2.47 6.34 -2.39 -0.02 2.46 16 Total: -1.00 -78.89 371.17 4.77 -74.12 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.96 Total: 7.27 kcal Atomic # 6 Polarization: 19.26 SS G_CDS: 9.08 Total: 28.34 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -6.92 Total: -134.12 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.07 Total: -25.05 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.72 Total: 49.43 kcal Total: -78.89 4.77 -74.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971579224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.367 kcal (2) G-P(sol) polarization free energy of solvation -78.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds