Wall clock time and date at job start Sat Apr 11 2020 06:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36938 * 119.99493 * 2 1 4 4 H 1.08001 * 119.99878 * 157.65519 * 3 2 1 5 5 C 1.38812 * 120.00364 * 337.38379 * 3 2 1 6 6 N 1.31624 * 119.99762 * 343.56235 * 5 3 2 7 7 Si 1.86795 * 120.00093 * 163.55931 * 5 3 2 8 8 H 1.48499 * 109.47272 * 60.00007 * 7 5 3 9 9 H 1.48503 * 109.47119 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46987 * 299.99866 * 7 5 3 11 11 C 1.46493 * 120.00353 * 180.02562 * 2 1 3 12 12 H 1.08992 * 110.64347 * 181.68747 * 11 2 1 13 13 C 1.55163 * 110.72011 * 305.02279 * 11 2 1 14 14 C 1.54911 * 101.58095 * 153.86286 * 13 11 2 15 15 N 1.47418 * 104.83346 * 322.99449 * 14 13 11 16 16 C 1.34780 * 125.64653 * 204.09487 * 15 14 13 17 17 O 1.21595 * 119.99995 * 174.68107 * 16 15 14 18 18 C 1.47531 * 120.00080 * 354.67302 * 16 15 14 19 19 C 1.39587 * 120.21949 * 320.52714 * 18 16 15 20 20 C 1.37857 * 119.96903 * 180.02562 * 19 18 16 21 21 C 1.38568 * 120.41238 * 359.97438 * 20 19 18 22 22 C 1.37971 * 120.44610 * 0.02562 * 21 20 19 23 23 C 1.39248 * 120.02066 * 359.72494 * 22 21 20 24 24 C 1.48176 * 120.20851 * 180.27723 * 23 22 21 25 25 C 1.40974 * 126.25850 * 129.94338 * 24 23 22 26 26 N 1.30622 * 108.06900 * 179.87753 * 25 24 23 27 27 N 1.40007 * 108.57213 * 0.38078 * 26 25 24 28 28 H 0.96999 * 125.86224 * 179.77947 * 27 26 25 29 29 C 1.34697 * 108.26912 * 359.75799 * 27 26 25 30 30 C 1.47020 * 108.70763 * 24.12356 * 15 14 13 31 31 H 1.09005 * 109.47026 * 86.06801 * 1 2 3 32 32 H 1.09002 * 109.46917 * 206.06241 * 1 2 3 33 33 H 1.08996 * 109.47215 * 326.06347 * 1 2 3 34 34 H 0.97000 * 119.99575 * 179.97438 * 6 5 3 35 35 H 1.08995 * 111.00319 * 271.94129 * 13 11 2 36 36 H 1.09000 * 111.00226 * 35.79442 * 13 11 2 37 37 H 1.09000 * 110.36538 * 204.15312 * 14 13 11 38 38 H 1.09005 * 110.45643 * 81.87789 * 14 13 11 39 39 H 1.08005 * 120.01580 * 359.97155 * 19 18 16 40 40 H 1.08001 * 119.79105 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.77961 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.99091 * 180.02562 * 22 21 20 43 43 H 1.07995 * 125.96549 * 359.97438 * 25 24 23 44 44 H 1.07995 * 126.20145 * 180.02562 * 29 27 26 45 45 H 1.08993 * 109.88947 * 239.52580 * 30 15 14 46 46 H 1.09001 * 109.88163 * 118.35728 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2212 0.3556 5 6 1.5356 2.3419 -0.4623 6 7 0.4415 2.2602 -1.1894 7 14 2.2620 4.0133 -0.0523 8 1 3.6422 4.0994 -0.5933 9 1 1.4246 5.0792 -0.6590 10 1 2.2961 4.1901 1.4218 11 6 2.1976 -1.2686 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.7509 -2.1610 1.1875 14 6 2.0640 -3.5785 0.6467 15 7 1.7326 -3.5166 -0.7884 16 6 1.4058 -4.5684 -1.5652 17 8 1.0566 -4.3891 -2.7160 18 6 1.4721 -5.9374 -1.0193 19 6 2.5176 -6.3056 -0.1710 20 6 2.5748 -7.5864 0.3358 21 6 1.5988 -8.5142 0.0091 22 6 0.5578 -8.1686 -0.8279 23 6 0.4793 -6.8785 -1.3460 24 6 -0.6402 -6.5011 -2.2403 25 6 -1.4651 -5.3653 -2.1098 26 7 -2.3311 -5.3791 -3.0876 27 7 -2.1026 -6.5176 -3.8697 28 1 -2.6047 -6.7753 -4.6586 29 6 -1.0655 -7.1935 -3.3387 30 6 1.8183 -2.1176 -1.2323 31 1 -0.3633 0.0705 -1.0253 32 1 -0.3633 -0.9232 0.4515 33 1 -0.3633 0.8526 0.5737 34 1 0.0123 3.0679 -1.5121 35 1 2.3374 -1.9451 2.0805 36 1 0.6851 -2.0447 1.3844 37 1 1.4432 -4.3213 1.1477 38 1 3.1197 -3.8135 0.7825 39 1 3.2820 -5.5877 0.0876 40 1 3.3852 -7.8684 0.9916 41 1 1.6534 -9.5147 0.4122 42 1 -0.1991 -8.8975 -1.0774 43 1 -1.3925 -4.6141 -1.3374 44 1 -0.6459 -8.1153 -3.7135 45 1 0.8542 -1.7930 -1.6235 46 1 2.5849 -2.0188 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971653761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:43 Heat of formation + Delta-G solvation = 107.964392 kcal Electronic energy + Delta-G solvation = -29624.482682 eV Core-core repulsion = 25709.970687 eV Total energy + Delta-G solvation = -3914.511995 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.25798 -40.00711 -38.48525 -37.15241 -34.77473 -32.64627 -31.99794 -31.32097 -30.96266 -29.66138 -28.61292 -27.77300 -26.01510 -24.50980 -23.27962 -22.70771 -22.21649 -21.62402 -20.37720 -19.45530 -19.11571 -18.04497 -17.10101 -17.01242 -16.00955 -15.86196 -15.59820 -14.94284 -14.71724 -14.52638 -14.30055 -14.23563 -13.78825 -13.57406 -13.33581 -13.20613 -13.09865 -12.69163 -12.53340 -12.42604 -12.09755 -11.92351 -11.74598 -11.59719 -11.22963 -10.90443 -10.75856 -10.72505 -10.54562 -10.44767 -10.28053 -9.89437 -9.81256 -9.76427 -9.57429 -9.28994 -9.04279 -8.54546 -8.21175 -8.13172 -6.79781 -5.75044 -3.21200 0.84816 1.12614 1.93686 2.81332 2.87139 2.99946 3.28216 3.39065 3.44995 3.45777 3.76851 4.47865 4.57564 4.61343 4.73995 4.78906 4.84998 5.03853 5.06012 5.26809 5.29191 5.30683 5.35065 5.50381 5.53721 5.60894 5.68001 5.79294 5.87427 5.88813 5.92496 6.03571 6.16745 6.27996 6.35484 6.37284 6.41236 6.58154 6.59123 6.70486 6.77927 6.86686 6.90377 7.20813 7.33276 7.65410 7.71926 7.79240 7.87433 8.36054 8.48674 9.19512 9.82944 10.32105 11.29538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003075 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.207468 B = 9104.486548 C =10469.575734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.265 4.265 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.900 5.900 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.291 1.291 10 H -0.284 1.284 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.608 5.608 16 C 0.564 3.436 17 O -0.525 6.525 18 C -0.114 4.114 19 C -0.086 4.086 20 C -0.132 4.132 21 C -0.100 4.100 22 C -0.122 4.122 23 C 0.048 3.952 24 C -0.197 4.197 25 C 0.094 3.906 26 N -0.291 5.291 27 N -0.476 5.476 28 H 0.439 0.561 29 C 0.076 3.924 30 C 0.088 3.912 31 H 0.030 0.970 32 H 0.004 0.996 33 H 0.042 0.958 34 H 0.254 0.746 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.176 0.824 44 H 0.176 0.824 45 H 0.074 0.926 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.723 -24.565 2.854 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.193 4.193 6 N -0.544 5.544 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.342 5.342 16 C 0.352 3.648 17 O -0.402 6.402 18 C -0.118 4.118 19 C -0.104 4.104 20 C -0.150 4.150 21 C -0.118 4.118 22 C -0.140 4.140 23 C 0.045 3.955 24 C -0.209 4.209 25 C -0.094 4.094 26 N -0.112 5.112 27 N -0.182 5.182 28 H 0.282 0.718 29 C -0.073 4.073 30 C -0.036 4.036 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.193 0.807 44 H 0.193 0.807 45 H 0.092 0.908 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.609 -23.693 1.551 23.751 hybrid contribution 0.924 0.405 0.053 1.011 sum 0.315 -23.288 1.604 23.345 Atomic orbital electron populations 1.20786 0.82509 0.95840 0.99437 1.43919 1.01835 0.99901 1.84752 1.19167 0.98422 0.85102 1.36724 0.91223 1.25028 0.98171 0.98579 0.97563 1.70089 1.21207 1.27494 1.35590 0.86335 0.78331 0.83750 0.78096 1.20883 1.21666 1.21016 1.21365 0.96347 0.85951 0.90112 0.90393 1.23357 1.02856 0.93196 0.99942 1.22420 0.99669 0.99073 0.81072 1.48491 1.67511 1.07792 1.10449 1.17856 0.77882 0.83570 0.85450 1.90825 1.46466 1.85432 1.17493 1.20027 0.96954 0.94342 1.00462 1.21397 0.97368 0.96862 0.94779 1.21081 0.99522 0.93316 1.01072 1.21190 0.94052 0.99448 0.97108 1.21127 0.99034 0.95298 0.98562 1.18009 0.91424 0.92260 0.93766 1.18678 1.02074 0.99386 1.00753 1.23807 0.92402 0.96526 0.96693 1.77237 1.24665 1.03459 1.05823 1.46115 1.27240 1.19229 1.25647 0.71805 1.22444 0.91109 0.98516 0.95202 1.22923 1.02392 0.78605 0.99696 0.95122 0.97769 0.93887 0.93556 0.90409 0.90401 0.91179 0.91757 0.85123 0.85628 0.85770 0.85601 0.80699 0.80688 0.90812 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.79 59.85 0.47 4.33 16 2 N -0.58 -14.18 2.93 -171.38 -0.50 -14.69 16 3 C -0.26 -7.10 9.59 -15.06 -0.14 -7.25 16 4 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 5 C 0.01 0.17 5.02 -17.43 -0.09 0.08 16 6 N -0.90 -26.25 10.90 55.49 0.60 -25.65 16 7 Si 0.91 21.62 29.58 -169.99 -5.03 16.59 16 8 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.17 3.37 3.45 -66.10 -0.23 3.15 16 12 H 0.08 1.50 7.92 -51.93 -0.41 1.09 16 13 C -0.15 -2.38 6.60 -24.58 -0.16 -2.54 16 14 C 0.10 1.32 5.28 -2.53 -0.01 1.31 16 15 N -0.61 -9.98 3.33 -171.75 -0.57 -10.56 16 16 C 0.56 9.57 6.43 -12.47 -0.08 9.49 16 17 O -0.53 -10.88 14.93 5.28 0.08 -10.80 16 18 C -0.11 -1.55 5.35 -104.70 -0.56 -2.11 16 19 C -0.09 -0.92 8.23 -39.22 -0.32 -1.24 16 20 C -0.13 -1.12 10.02 -39.60 -0.40 -1.52 16 21 C -0.10 -0.80 10.02 -39.56 -0.40 -1.19 16 22 C -0.12 -1.13 9.69 -39.30 -0.38 -1.51 16 23 C 0.05 0.59 5.78 -104.53 -0.60 -0.01 16 24 C -0.20 -2.64 4.44 -105.36 -0.47 -3.11 16 25 C 0.09 1.46 9.89 -17.03 -0.17 1.29 16 26 N -0.29 -4.53 12.66 30.82 0.39 -4.14 16 27 N -0.48 -5.41 7.32 30.65 0.22 -5.18 16 28 H 0.44 3.33 8.96 -182.67 -1.64 1.69 16 29 C 0.08 0.81 11.87 -16.88 -0.20 0.61 16 30 C 0.09 1.73 6.51 -3.06 -0.02 1.71 16 31 H 0.03 0.83 7.30 -51.93 -0.38 0.45 16 32 H 0.00 0.08 6.11 -51.93 -0.32 -0.23 16 33 H 0.04 1.12 7.33 -51.93 -0.38 0.74 16 34 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.30 6.13 -51.93 -0.32 0.98 16 37 H 0.07 0.81 7.38 -51.93 -0.38 0.43 16 38 H 0.06 0.71 7.00 -51.93 -0.36 0.35 16 39 H 0.13 1.28 6.07 -52.48 -0.32 0.96 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.18 2.76 7.93 -52.49 -0.42 2.34 16 44 H 0.18 1.17 8.06 -52.49 -0.42 0.74 16 45 H 0.07 1.68 7.03 -51.93 -0.37 1.32 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -34.55 372.77 -10.33 -44.88 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.37 Total: 2.45 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -3.77 Total: 1.48 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: 0.15 Total: -60.21 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.55 -10.33 -44.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971653761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.842 kcal (2) G-P(sol) polarization free energy of solvation -34.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds