Wall clock time and date at job start Sat Apr 11 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36938 * 119.99493 * 2 1 4 4 H 1.08001 * 119.99878 * 157.65519 * 3 2 1 5 5 C 1.38812 * 120.00364 * 337.38379 * 3 2 1 6 6 N 1.31624 * 119.99762 * 343.56235 * 5 3 2 7 7 Si 1.86795 * 120.00093 * 163.55931 * 5 3 2 8 8 H 1.48499 * 109.47272 * 60.00007 * 7 5 3 9 9 H 1.48503 * 109.47119 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.46987 * 299.99866 * 7 5 3 11 11 C 1.46493 * 120.00353 * 180.02562 * 2 1 3 12 12 H 1.08992 * 110.64347 * 181.68747 * 11 2 1 13 13 C 1.55163 * 110.72011 * 305.02279 * 11 2 1 14 14 C 1.54911 * 101.58095 * 153.86286 * 13 11 2 15 15 N 1.47418 * 104.83346 * 322.99449 * 14 13 11 16 16 C 1.34780 * 125.64653 * 204.09487 * 15 14 13 17 17 O 1.21595 * 119.99995 * 174.68107 * 16 15 14 18 18 C 1.47531 * 120.00080 * 354.67302 * 16 15 14 19 19 C 1.39587 * 120.21949 * 320.52714 * 18 16 15 20 20 C 1.37857 * 119.96903 * 180.02562 * 19 18 16 21 21 C 1.38568 * 120.41238 * 359.97438 * 20 19 18 22 22 C 1.37971 * 120.44610 * 0.02562 * 21 20 19 23 23 C 1.39248 * 120.02066 * 359.72494 * 22 21 20 24 24 C 1.48176 * 120.20851 * 180.27723 * 23 22 21 25 25 C 1.40974 * 126.25850 * 129.94338 * 24 23 22 26 26 N 1.30622 * 108.06900 * 179.87753 * 25 24 23 27 27 N 1.40007 * 108.57213 * 0.38078 * 26 25 24 28 28 H 0.96999 * 125.86224 * 179.77947 * 27 26 25 29 29 C 1.34697 * 108.26912 * 359.75799 * 27 26 25 30 30 C 1.47020 * 108.70763 * 24.12356 * 15 14 13 31 31 H 1.09005 * 109.47026 * 86.06801 * 1 2 3 32 32 H 1.09002 * 109.46917 * 206.06241 * 1 2 3 33 33 H 1.08996 * 109.47215 * 326.06347 * 1 2 3 34 34 H 0.97000 * 119.99575 * 179.97438 * 6 5 3 35 35 H 1.08995 * 111.00319 * 271.94129 * 13 11 2 36 36 H 1.09000 * 111.00226 * 35.79442 * 13 11 2 37 37 H 1.09000 * 110.36538 * 204.15312 * 14 13 11 38 38 H 1.09005 * 110.45643 * 81.87789 * 14 13 11 39 39 H 1.08005 * 120.01580 * 359.97155 * 19 18 16 40 40 H 1.08001 * 119.79105 * 179.97438 * 20 19 18 41 41 H 1.08000 * 119.77961 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.99091 * 180.02562 * 22 21 20 43 43 H 1.07995 * 125.96549 * 359.97438 * 25 24 23 44 44 H 1.07995 * 126.20145 * 180.02562 * 29 27 26 45 45 H 1.08993 * 109.88947 * 239.52580 * 30 15 14 46 46 H 1.09001 * 109.88163 * 118.35728 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1688 1.2212 0.3556 5 6 1.5356 2.3419 -0.4623 6 7 0.4415 2.2602 -1.1894 7 14 2.2620 4.0133 -0.0523 8 1 3.6422 4.0994 -0.5933 9 1 1.4246 5.0792 -0.6590 10 1 2.2961 4.1901 1.4218 11 6 2.1976 -1.2686 -0.0006 12 1 3.2726 -1.0916 0.0295 13 6 1.7509 -2.1610 1.1875 14 6 2.0640 -3.5785 0.6467 15 7 1.7326 -3.5166 -0.7884 16 6 1.4058 -4.5684 -1.5652 17 8 1.0566 -4.3891 -2.7160 18 6 1.4721 -5.9374 -1.0193 19 6 2.5176 -6.3056 -0.1710 20 6 2.5748 -7.5864 0.3358 21 6 1.5988 -8.5142 0.0091 22 6 0.5578 -8.1686 -0.8279 23 6 0.4793 -6.8785 -1.3460 24 6 -0.6402 -6.5011 -2.2403 25 6 -1.4651 -5.3653 -2.1098 26 7 -2.3311 -5.3791 -3.0876 27 7 -2.1026 -6.5176 -3.8697 28 1 -2.6047 -6.7753 -4.6586 29 6 -1.0655 -7.1935 -3.3387 30 6 1.8183 -2.1176 -1.2323 31 1 -0.3633 0.0705 -1.0253 32 1 -0.3633 -0.9232 0.4515 33 1 -0.3633 0.8526 0.5737 34 1 0.0123 3.0679 -1.5121 35 1 2.3374 -1.9451 2.0805 36 1 0.6851 -2.0447 1.3844 37 1 1.4432 -4.3213 1.1477 38 1 3.1197 -3.8135 0.7825 39 1 3.2820 -5.5877 0.0876 40 1 3.3852 -7.8684 0.9916 41 1 1.6534 -9.5147 0.4122 42 1 -0.1991 -8.8975 -1.0774 43 1 -1.3925 -4.6141 -1.3374 44 1 -0.6459 -8.1153 -3.7135 45 1 0.8542 -1.7930 -1.6235 46 1 2.5849 -2.0188 -2.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971653761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:42 Heat of formation + Delta-G solvation = 85.121952 kcal Electronic energy + Delta-G solvation = -29625.473205 eV Core-core repulsion = 25709.970687 eV Total energy + Delta-G solvation = -3915.502518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23694 -41.19381 -39.53260 -38.54650 -36.54379 -33.64889 -33.43804 -32.37463 -32.14216 -31.09016 -29.54131 -29.22952 -28.07117 -25.83603 -24.40590 -23.96307 -23.40503 -22.64255 -21.39561 -20.81776 -20.43100 -18.96883 -18.94061 -18.22950 -17.46497 -16.96265 -16.67409 -16.46675 -15.93621 -15.64880 -15.39384 -15.23417 -15.13350 -15.02975 -14.62828 -14.48254 -14.29036 -14.00669 -13.94976 -13.62779 -13.43205 -13.22241 -13.12334 -12.75170 -12.65097 -12.51407 -12.42105 -12.24679 -12.13480 -12.02524 -11.79320 -11.70329 -11.43123 -10.96806 -10.65044 -10.62068 -10.20295 -9.83908 -9.57434 -9.00653 -8.83276 -7.84742 -5.33836 0.01806 0.41153 0.98453 1.47505 1.50220 1.56967 1.80676 1.83625 2.02493 2.03000 2.51705 2.94197 3.27144 3.52109 3.59921 3.68983 3.83994 3.98474 4.02558 4.12117 4.21882 4.28113 4.29842 4.35575 4.45099 4.54946 4.58797 4.61457 4.67975 4.76550 4.86477 4.90044 4.97109 5.03194 5.15811 5.17130 5.25278 5.31336 5.40286 5.43568 5.58033 5.61074 5.63557 5.65952 5.66123 6.07219 6.29714 6.42568 6.59981 6.65494 7.10489 7.19366 7.82582 8.28308 9.18614 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003075 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.207468 B = 9104.486548 C =10469.575734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.599 5.599 3 C -0.269 4.269 4 H 0.081 0.919 5 C -0.054 4.054 6 N -0.939 5.939 7 Si 0.972 3.028 8 H -0.273 1.273 9 H -0.300 1.300 10 H -0.274 1.274 11 C 0.166 3.834 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.108 3.892 15 N -0.609 5.609 16 C 0.562 3.438 17 O -0.577 6.577 18 C -0.142 4.142 19 C -0.088 4.088 20 C -0.124 4.124 21 C -0.086 4.086 22 C -0.118 4.118 23 C 0.031 3.969 24 C -0.218 4.218 25 C 0.070 3.930 26 N -0.336 5.336 27 N -0.464 5.464 28 H 0.454 0.546 29 C 0.093 3.907 30 C 0.102 3.898 31 H -0.009 1.009 32 H 0.031 0.969 33 H 0.019 0.981 34 H 0.247 0.753 35 H 0.104 0.896 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.150 0.850 43 H 0.154 0.846 44 H 0.223 0.777 45 H 0.029 0.971 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.033 -28.602 5.117 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.320 5.320 3 C -0.399 4.399 4 H 0.099 0.901 5 C -0.249 4.249 6 N -0.585 5.585 7 Si 0.800 3.200 8 H -0.199 1.199 9 H -0.226 1.226 10 H -0.200 1.200 11 C 0.058 3.942 12 H 0.104 0.896 13 C -0.179 4.179 14 C -0.014 4.014 15 N -0.343 5.343 16 C 0.353 3.647 17 O -0.457 6.457 18 C -0.145 4.145 19 C -0.107 4.107 20 C -0.142 4.142 21 C -0.104 4.104 22 C -0.136 4.136 23 C 0.029 3.971 24 C -0.229 4.229 25 C -0.116 4.116 26 N -0.158 5.158 27 N -0.173 5.173 28 H 0.300 0.700 29 C -0.056 4.056 30 C -0.024 4.024 31 H 0.009 0.991 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.179 0.821 42 H 0.168 0.832 43 H 0.172 0.828 44 H 0.240 0.760 45 H 0.047 0.953 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.731 -27.775 3.861 28.095 hybrid contribution 0.232 1.485 -0.680 1.649 sum 1.964 -26.290 3.181 26.554 Atomic orbital electron populations 1.20416 0.83199 0.96030 0.96846 1.44113 1.01755 1.01170 1.84963 1.19621 0.98831 0.86109 1.35350 0.90100 1.25871 0.98880 1.02233 0.97947 1.70289 1.23030 1.27751 1.37467 0.85267 0.77568 0.79075 0.78073 1.19910 1.22626 1.19952 1.21587 0.96348 0.84615 0.91669 0.89575 1.23233 1.02295 0.93423 0.98971 1.22625 1.02165 0.97959 0.78650 1.48521 1.67601 1.06158 1.11983 1.18579 0.76287 0.85009 0.84820 1.90781 1.48672 1.86384 1.19850 1.19822 0.99417 0.92173 1.03099 1.21523 0.96512 0.98353 0.94270 1.21473 1.00250 0.92067 1.00389 1.21665 0.92553 1.00886 0.95306 1.21402 1.00001 0.94121 0.98047 1.18153 0.90991 0.93525 0.94459 1.18969 1.02650 0.99015 1.02276 1.23689 0.93772 0.97418 0.96757 1.77113 1.25953 1.05817 1.06919 1.46129 1.27512 1.18059 1.25614 0.69965 1.23134 0.89717 0.99117 0.93644 1.22450 0.99301 0.81282 0.99382 0.99050 0.95031 0.96219 0.94366 0.87736 0.91805 0.88874 0.88350 0.84373 0.82373 0.82086 0.83231 0.82842 0.76035 0.95252 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.30 7.79 127.77 0.99 10.29 16 2 N -0.60 -30.05 2.93 -696.13 -2.04 -32.09 16 3 C -0.27 -14.69 9.59 84.03 0.81 -13.88 16 4 H 0.08 4.15 7.86 -2.91 -0.02 4.13 16 5 C -0.05 -3.06 5.02 84.86 0.43 -2.64 16 6 N -0.94 -57.65 10.90 21.65 0.24 -57.42 16 7 Si 0.97 45.38 29.58 68.60 2.03 47.41 16 8 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 9 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 C 0.17 6.56 3.45 46.18 0.16 6.72 16 12 H 0.09 3.25 7.92 -2.39 -0.02 3.23 16 13 C -0.14 -4.11 6.60 31.99 0.21 -3.90 16 14 C 0.11 2.58 5.28 86.86 0.46 3.04 16 15 N -0.61 -20.35 3.33 -815.55 -2.71 -23.06 16 16 C 0.56 19.67 6.43 86.69 0.56 20.23 16 17 O -0.58 -25.48 14.93 -4.02 -0.06 -25.54 16 18 C -0.14 -3.67 5.35 -19.91 -0.11 -3.77 16 19 C -0.09 -1.60 8.23 22.51 0.19 -1.41 16 20 C -0.12 -1.46 10.02 22.26 0.22 -1.23 16 21 C -0.09 -0.90 10.02 22.29 0.22 -0.68 16 22 C -0.12 -1.71 9.69 22.45 0.22 -1.50 16 23 C 0.03 0.72 5.78 -19.81 -0.11 0.60 16 24 C -0.22 -5.81 4.44 -20.34 -0.09 -5.90 16 25 C 0.07 2.35 9.89 85.54 0.85 3.20 16 26 N -0.34 -11.11 12.66 -56.40 -0.71 -11.82 16 27 N -0.46 -10.49 7.32 -56.95 -0.42 -10.90 16 28 H 0.45 6.60 8.96 -213.38 -1.91 4.69 16 29 C 0.09 1.86 11.87 83.88 1.00 2.85 16 30 C 0.10 4.23 6.51 86.73 0.56 4.79 16 31 H -0.01 -0.52 7.30 -2.38 -0.02 -0.54 16 32 H 0.03 1.41 6.11 -2.39 -0.01 1.40 16 33 H 0.02 1.06 7.33 -2.39 -0.02 1.05 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.07 6.13 -2.39 -0.01 2.06 16 37 H 0.09 1.89 7.38 -2.39 -0.02 1.87 16 38 H 0.10 1.76 7.00 -2.38 -0.02 1.75 16 39 H 0.14 2.19 6.07 -2.91 -0.02 2.17 16 40 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 41 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 42 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.15 5.50 7.93 -2.91 -0.02 5.48 16 44 H 0.22 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.03 1.47 7.03 -2.39 -0.02 1.45 16 46 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -83.24 372.77 1.99 -81.25 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -0.89 Total: 15.36 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 6.56 Total: 16.81 kcal Atomic # 7 Polarization: -129.65 SS G_CDS: -5.65 Total: -135.29 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.06 Total: -25.54 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -83.24 1.99 -81.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971653761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.373 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds