Wall clock time and date at job start Sat Apr 11 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99896 * 2 1 4 4 H 1.08003 * 119.99926 * 130.81544 * 3 2 1 5 5 C 1.38813 * 120.00050 * 310.81574 * 3 2 1 6 6 N 1.31622 * 120.00117 * 183.05651 * 5 3 2 7 7 Si 1.86800 * 119.99820 * 3.05677 * 5 3 2 8 8 H 1.48492 * 109.47313 * 94.37895 * 7 5 3 9 9 H 1.48503 * 109.46937 * 214.37836 * 7 5 3 10 10 H 1.48503 * 109.47035 * 334.37528 * 7 5 3 11 11 C 1.46503 * 120.00206 * 179.97438 * 2 1 3 12 12 H 1.09000 * 110.88482 * 182.43017 * 11 2 1 13 13 C 1.55156 * 111.03973 * 306.33611 * 11 2 1 14 14 C 1.54334 * 103.02017 * 153.39254 * 13 11 2 15 15 N 1.47020 * 107.26642 * 338.14044 * 14 13 11 16 16 C 1.34778 * 125.65071 * 178.85036 * 15 14 13 17 17 O 1.21572 * 120.00332 * 185.48279 * 16 15 14 18 18 C 1.47668 * 119.99550 * 5.47924 * 16 15 14 19 19 C 1.39706 * 120.08060 * 353.38335 * 18 16 15 20 20 C 1.37723 * 119.92295 * 179.97438 * 19 18 16 21 21 C 1.39060 * 120.07654 * 0.02562 * 20 19 18 22 22 N 1.39827 * 119.92165 * 179.97438 * 21 20 19 23 23 C 1.35839 * 126.10229 * 179.71507 * 22 21 20 24 24 C 1.35291 * 107.61574 * 179.89701 * 23 22 21 25 25 C 1.39953 * 107.96442 * 0.36936 * 24 23 22 26 26 N 1.30828 * 108.37292 * 359.76579 * 25 24 23 27 27 C 1.39057 * 120.15703 * 359.97438 * 21 20 19 28 28 C 1.37725 * 120.07799 * 359.97438 * 27 21 20 29 29 C 1.47428 * 108.70250 * 358.58532 * 15 14 13 30 30 H 1.08997 * 109.47193 * 274.73499 * 1 2 3 31 31 H 1.08997 * 109.46999 * 34.74118 * 1 2 3 32 32 H 1.09007 * 109.46658 * 154.73931 * 1 2 3 33 33 H 0.96997 * 119.99474 * 179.97438 * 6 5 3 34 34 H 1.08993 * 110.72370 * 271.95144 * 13 11 2 35 35 H 1.09004 * 110.71840 * 35.22523 * 13 11 2 36 36 H 1.09002 * 109.99229 * 218.66876 * 14 13 11 37 37 H 1.08998 * 109.77899 * 97.49808 * 14 13 11 38 38 H 1.08001 * 120.03812 * 0.02562 * 19 18 16 39 39 H 1.07995 * 119.95908 * 180.29451 * 20 19 18 40 40 H 1.08000 * 126.19315 * 0.03293 * 23 22 21 41 41 H 1.07999 * 126.01431 * 180.09746 * 24 23 22 42 42 H 1.08003 * 125.81555 * 179.81092 * 25 24 23 43 43 H 1.07997 * 119.96221 * 179.97438 * 27 21 20 44 44 H 1.07993 * 120.03986 * 180.02562 * 28 27 21 45 45 H 1.09001 * 110.36805 * 143.19282 * 29 15 14 46 46 H 1.08999 * 110.36821 * 265.40501 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 2.9491 1.3479 0.7079 5 6 1.8162 2.1799 -0.9098 6 7 2.5130 3.2958 -0.9502 7 14 0.3786 1.9336 -2.0769 8 1 -0.8449 2.5360 -1.4892 9 1 0.6778 2.5883 -3.3758 10 1 0.1601 0.4808 -2.2935 11 6 2.1976 -1.2687 0.0006 12 1 3.2730 -1.0964 0.0437 13 6 1.7330 -2.1796 1.1675 14 6 2.0342 -3.5991 0.6417 15 7 2.1002 -3.5164 -0.8247 16 6 2.3654 -4.5417 -1.6582 17 8 2.4932 -4.3389 -2.8500 18 6 2.5010 -5.9116 -1.1236 19 6 2.4925 -6.1287 0.2565 20 6 2.6186 -7.4077 0.7515 21 6 2.7547 -8.4822 -0.1206 22 7 2.8831 -9.7793 0.3856 23 6 3.0171 -10.9150 -0.3476 24 6 3.1135 -11.9514 0.5167 25 6 3.0280 -11.4390 1.8163 26 7 2.8902 -10.1403 1.7393 27 6 2.7636 -8.2699 -1.4948 28 6 2.6369 -6.9936 -1.9968 29 6 1.8217 -2.1273 -1.2328 30 1 -0.3633 0.0848 1.0241 31 1 -0.3633 0.8444 -0.5856 32 1 -0.3633 -0.9295 -0.4386 33 1 2.2801 3.9902 -1.5862 34 1 2.3057 -1.9711 2.0711 35 1 0.6652 -2.0584 1.3498 36 1 1.2393 -4.2831 0.9390 37 1 2.9898 -3.9437 1.0369 38 1 2.3863 -5.2946 0.9343 39 1 2.6073 -7.5767 1.8181 40 1 3.0443 -10.9788 -1.4254 41 1 3.2309 -12.9914 0.2505 42 1 3.0694 -12.0172 2.7276 43 1 2.8699 -9.1066 -2.1692 44 1 2.6434 -6.8295 -3.0642 45 1 2.4384 -1.8525 -2.0885 46 1 0.7654 -2.0071 -1.4732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971684570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:53 Heat of formation + Delta-G solvation = 144.590992 kcal Electronic energy + Delta-G solvation = -28559.759766 eV Core-core repulsion = 24646.836020 eV Total energy + Delta-G solvation = -3912.923746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.90628 -40.53154 -38.76874 -37.52494 -35.19816 -33.90420 -32.03955 -31.63671 -30.68964 -30.39261 -29.63492 -28.15633 -26.30232 -25.08427 -23.66021 -23.36295 -22.50608 -21.13500 -20.92084 -20.01088 -19.50619 -18.54758 -17.42649 -17.15788 -16.27881 -15.96597 -15.67612 -15.58718 -15.27634 -14.95776 -14.46380 -14.35844 -14.11037 -13.95713 -13.70088 -13.54909 -13.22026 -13.07720 -12.97016 -12.90117 -12.55469 -12.38066 -12.29274 -12.04842 -11.79293 -11.33792 -11.11331 -10.90469 -10.72112 -10.69710 -10.62708 -10.22977 -9.93918 -9.87507 -9.59369 -9.46344 -9.42601 -8.64498 -8.58417 -8.37940 -6.78010 -6.03464 -3.71158 0.17189 0.94758 1.58136 1.92732 2.33137 2.79252 3.00535 3.27144 3.41259 3.43780 3.59552 4.00249 4.25481 4.36144 4.42775 4.48267 4.51487 4.66299 4.81685 4.91774 4.99345 5.04505 5.13725 5.14689 5.21515 5.24763 5.34716 5.45672 5.51088 5.61297 5.66889 5.76032 5.80093 5.83922 5.98115 6.04622 6.14519 6.16521 6.23234 6.23811 6.31924 6.41007 6.53353 6.59246 6.72197 6.74724 7.16181 7.59854 8.05552 8.19270 8.35531 8.85448 9.57826 10.01075 11.07265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.029318 B = 0.002169 C = 0.002081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.805343 B =12903.816515 C =13448.678081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.597 5.597 3 C -0.282 4.282 4 H 0.079 0.921 5 C 0.040 3.960 6 N -0.902 5.902 7 Si 0.906 3.094 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.267 1.267 11 C 0.175 3.825 12 H 0.090 0.910 13 C -0.154 4.154 14 C 0.090 3.910 15 N -0.606 5.606 16 C 0.569 3.431 17 O -0.540 6.540 18 C -0.134 4.134 19 C -0.099 4.099 20 C -0.128 4.128 21 C 0.178 3.822 22 N -0.326 5.326 23 C 0.053 3.947 24 C -0.260 4.260 25 C 0.055 3.945 26 N -0.287 5.287 27 C -0.152 4.152 28 C -0.034 4.034 29 C 0.081 3.919 30 H 0.019 0.981 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.173 0.827 39 H 0.143 0.857 40 H 0.179 0.821 41 H 0.155 0.845 42 H 0.191 0.809 43 H 0.135 0.865 44 H 0.146 0.854 45 H 0.079 0.921 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -29.425 3.983 29.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.320 5.320 3 C -0.411 4.411 4 H 0.097 0.903 5 C -0.162 4.162 6 N -0.542 5.542 7 Si 0.738 3.262 8 H -0.215 1.215 9 H -0.233 1.233 10 H -0.192 1.192 11 C 0.066 3.934 12 H 0.109 0.891 13 C -0.194 4.194 14 C -0.033 4.033 15 N -0.339 5.339 16 C 0.358 3.642 17 O -0.419 6.419 18 C -0.138 4.138 19 C -0.117 4.117 20 C -0.148 4.148 21 C 0.085 3.915 22 N -0.102 5.102 23 C -0.089 4.089 24 C -0.288 4.288 25 C -0.132 4.132 26 N -0.105 5.105 27 C -0.173 4.173 28 C -0.053 4.053 29 C -0.043 4.043 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.190 0.810 39 H 0.160 0.840 40 H 0.196 0.804 41 H 0.173 0.827 42 H 0.207 0.793 43 H 0.153 0.847 44 H 0.164 0.836 45 H 0.098 0.902 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.628 -28.002 3.851 28.272 hybrid contribution -0.781 -0.966 -1.116 1.670 sum -1.409 -28.968 2.735 29.131 Atomic orbital electron populations 1.21380 0.85535 0.98118 0.98018 1.43842 1.00139 1.01452 1.86533 1.18725 1.17351 0.90548 1.14471 0.90327 1.25709 0.97771 0.96689 0.96004 1.69778 1.39507 1.07309 1.37564 0.86537 0.81900 0.77993 0.79733 1.21463 1.23294 1.19238 1.21650 0.97210 0.85023 0.89528 0.89149 1.23252 1.02803 0.92759 1.00555 1.22545 1.00764 0.99280 0.80695 1.48361 1.68760 1.09866 1.06948 1.17813 0.77230 0.83613 0.85535 1.90783 1.51289 1.84577 1.15205 1.20044 1.06040 0.93786 0.93953 1.22835 0.94873 0.98380 0.95632 1.20885 1.02698 0.90780 1.00417 1.17798 0.99772 0.81298 0.92670 1.46046 1.54822 1.04546 1.04770 1.22833 1.01289 0.85515 0.99237 1.21647 1.14848 1.00260 0.92060 1.24130 0.98382 0.91567 0.99135 1.77457 1.23784 1.15254 0.94010 1.20718 1.06061 0.98307 0.92193 1.21077 0.93451 0.90002 1.00781 1.23178 1.01241 0.78689 1.01152 0.96305 0.95228 0.94503 0.92498 0.89902 0.90494 0.90819 0.90491 0.81007 0.83962 0.80351 0.82724 0.79263 0.84710 0.83619 0.90246 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.32 7.70 59.85 0.46 2.78 16 2 N -0.60 -13.37 2.51 -171.03 -0.43 -13.80 16 3 C -0.28 -7.61 9.93 -15.06 -0.15 -7.75 16 4 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 5 C 0.04 1.14 5.50 -17.43 -0.10 1.05 16 6 N -0.90 -27.09 13.97 55.49 0.78 -26.31 16 7 Si 0.91 22.35 24.76 -169.99 -4.21 18.14 16 8 H -0.29 -6.92 7.10 56.52 0.40 -6.52 16 9 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 10 H -0.27 -6.30 6.18 56.52 0.35 -5.95 16 11 C 0.18 3.23 3.54 -65.78 -0.23 2.99 16 12 H 0.09 1.75 7.96 -51.93 -0.41 1.33 16 13 C -0.15 -2.12 6.51 -24.89 -0.16 -2.29 16 14 C 0.09 1.05 4.86 -3.06 -0.01 1.03 16 15 N -0.61 -9.25 3.33 -176.76 -0.59 -9.84 16 16 C 0.57 9.03 7.80 -12.41 -0.10 8.93 16 17 O -0.54 -10.44 16.59 5.30 0.09 -10.35 16 18 C -0.13 -1.68 5.88 -104.95 -0.62 -2.29 16 19 C -0.10 -1.03 8.60 -39.22 -0.34 -1.37 16 20 C -0.13 -1.31 9.64 -39.46 -0.38 -1.69 16 21 C 0.18 1.82 6.69 -83.60 -0.56 1.26 16 22 N -0.33 -3.25 3.81 -10.55 -0.04 -3.29 16 23 C 0.05 0.39 10.81 -16.83 -0.18 0.20 16 24 C -0.26 -1.69 10.80 -39.99 -0.43 -2.12 16 25 C 0.06 0.42 12.02 -17.34 -0.21 0.21 16 26 N -0.29 -3.00 11.85 30.64 0.36 -2.64 16 27 C -0.15 -1.37 9.44 -39.47 -0.37 -1.75 16 28 C -0.03 -0.36 9.58 -39.22 -0.38 -0.74 16 29 C 0.08 1.47 6.49 -2.53 -0.02 1.46 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.03 0.66 2.75 -51.93 -0.14 0.52 16 32 H 0.04 0.67 6.34 -51.92 -0.33 0.34 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.06 7.09 -51.93 -0.37 0.70 16 36 H 0.07 0.71 6.73 -51.93 -0.35 0.36 16 37 H 0.08 0.76 6.75 -51.93 -0.35 0.41 16 38 H 0.17 1.55 2.72 -59.04 -0.16 1.38 16 39 H 0.14 1.37 7.68 -52.49 -0.40 0.97 16 40 H 0.18 0.72 7.04 -52.49 -0.37 0.35 16 41 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 42 H 0.19 0.77 8.06 -52.48 -0.42 0.34 16 43 H 0.14 0.82 6.73 -52.49 -0.35 0.47 16 44 H 0.15 1.54 7.66 -52.49 -0.40 1.14 16 45 H 0.08 1.60 7.98 -51.93 -0.41 1.19 16 46 H 0.07 1.27 6.33 -51.93 -0.33 0.94 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -34.21 365.53 -7.99 -42.20 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.69 Total: 0.46 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.77 Total: -0.09 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.08 Total: -55.87 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.21 Total: 18.14 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.21 -7.99 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971684570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.788 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds