Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00194 * 2 1 4 4 H 1.08003 * 119.99964 * 153.66177 * 3 2 1 5 5 C 1.38809 * 119.99974 * 333.65717 * 3 2 1 6 6 N 1.31620 * 120.00130 * 352.84555 * 5 3 2 7 7 Si 1.86802 * 120.00044 * 172.84284 * 5 3 2 8 8 H 1.48500 * 109.47043 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47158 * 119.99905 * 7 5 3 10 10 H 1.48496 * 109.47377 * 240.00398 * 7 5 3 11 11 C 1.46505 * 119.99723 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.63981 * 180.69452 * 11 2 1 13 13 C 1.55156 * 110.72259 * 57.55614 * 11 2 1 14 14 C 1.54901 * 101.58423 * 206.13507 * 13 11 2 15 15 N 1.47427 * 104.83123 * 37.01063 * 14 13 11 16 16 C 1.34777 * 125.64861 * 155.91370 * 15 14 13 17 17 O 1.21575 * 119.99735 * 177.91491 * 16 15 14 18 18 C 1.47664 * 119.99980 * 357.91238 * 16 15 14 19 19 C 1.39707 * 120.07498 * 205.85777 * 18 16 15 20 20 C 1.37729 * 119.92059 * 179.78870 * 19 18 16 21 21 C 1.39061 * 120.07475 * 0.46655 * 20 19 18 22 22 N 1.39830 * 119.92285 * 179.75980 * 21 20 19 23 23 C 1.35844 * 126.09989 * 359.74995 * 22 21 20 24 24 C 1.35284 * 107.61270 * 179.83631 * 23 22 21 25 25 C 1.39949 * 107.96859 * 0.41544 * 24 23 22 26 26 N 1.30826 * 108.37075 * 359.74406 * 25 24 23 27 27 C 1.39058 * 120.15609 * 359.78900 * 21 20 19 28 28 C 1.37720 * 120.08043 * 359.97438 * 27 21 20 29 29 C 1.47318 * 108.73590 * 335.71219 * 15 14 13 30 30 H 1.08992 * 109.47720 * 88.50270 * 1 2 3 31 31 H 1.09007 * 109.46678 * 328.50167 * 1 2 3 32 32 H 1.09005 * 109.47377 * 208.50797 * 1 2 3 33 33 H 0.97003 * 119.99848 * 180.02562 * 6 5 3 34 34 H 1.08999 * 111.00251 * 324.21091 * 13 11 2 35 35 H 1.09000 * 111.00108 * 88.05500 * 13 11 2 36 36 H 1.08999 * 110.37007 * 155.84658 * 14 13 11 37 37 H 1.09002 * 110.36731 * 278.16926 * 14 13 11 38 38 H 1.08000 * 120.04379 * 0.02849 * 19 18 16 39 39 H 1.07996 * 119.96706 * 180.23331 * 20 19 18 40 40 H 1.07997 * 126.19061 * 359.97438 * 23 22 21 41 41 H 1.08000 * 126.01277 * 180.16123 * 24 23 22 42 42 H 1.08010 * 125.81519 * 179.76151 * 25 24 23 43 43 H 1.07997 * 119.96032 * 179.97438 * 27 21 20 44 44 H 1.08001 * 120.04147 * 179.97438 * 28 27 21 45 45 H 1.08998 * 110.06786 * 241.87715 * 29 15 14 46 46 H 1.09001 * 109.84882 * 120.61441 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1456 1.2344 0.4150 5 6 1.5638 2.3256 -0.5334 6 7 0.4119 2.2396 -1.1645 7 14 2.4100 3.9814 -0.3556 8 1 3.6831 3.8092 0.3892 9 1 2.6963 4.5381 -1.7022 10 1 1.5237 4.9131 0.3871 11 6 2.1974 -1.2688 -0.0006 12 1 3.2729 -1.0916 0.0119 13 6 1.7977 -2.1330 -1.2256 14 6 2.0900 -3.5628 -0.7064 15 7 1.7028 -3.5343 0.7158 16 6 1.3465 -4.6038 1.4545 17 8 1.0818 -4.4675 2.6332 18 6 1.2776 -5.9411 0.8321 19 6 0.4363 -6.9198 1.3670 20 6 0.3712 -8.1646 0.7813 21 6 1.1489 -8.4509 -0.3353 22 7 1.0840 -9.7174 -0.9244 23 6 0.3129 -10.7554 -0.5079 24 6 0.5376 -11.7940 -1.3452 25 6 1.4794 -11.3858 -2.2964 26 7 1.8071 -10.1443 -2.0459 27 6 1.9914 -7.4809 -0.8672 28 6 2.0578 -6.2324 -0.2896 29 6 1.7743 -2.1441 1.1980 30 1 -0.3634 0.0268 -1.0272 31 1 -0.3633 0.8763 0.5370 32 1 -0.3634 -0.9031 0.4905 33 1 0.0027 3.0360 -1.5376 34 1 0.7404 -2.0114 -1.4612 35 1 2.4185 -1.8965 -2.0898 36 1 1.4896 -4.2934 -1.2484 37 1 3.1507 -3.7932 -0.8063 38 1 -0.1653 -6.6993 2.2365 39 1 -0.2818 -8.9205 1.1920 40 1 -0.3595 -10.7513 0.3371 41 1 0.0749 -12.7681 -1.2870 42 1 1.8692 -11.9924 -3.1006 43 1 2.5943 -7.7068 -1.7343 44 1 2.7127 -5.4796 -0.7030 45 1 2.5126 -2.0623 1.9956 46 1 0.7965 -1.8276 1.5612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971684571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 124.014903 kcal Electronic energy + Delta-G solvation = -28442.907136 eV Core-core repulsion = 24529.091143 eV Total energy + Delta-G solvation = -3913.815993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.87612 -40.39521 -38.71337 -37.36783 -34.92529 -33.87423 -31.90501 -31.52343 -30.52351 -29.95817 -29.53108 -27.75766 -26.07453 -24.92898 -23.56456 -23.24918 -22.39973 -21.15198 -20.90678 -19.88881 -19.23461 -18.56510 -17.30721 -17.07902 -16.15142 -15.86556 -15.62493 -15.57100 -14.99054 -14.78234 -14.42392 -14.27779 -13.98593 -13.85511 -13.56940 -13.35855 -13.15370 -13.07728 -12.96597 -12.58875 -12.38175 -12.31196 -11.81240 -11.71216 -11.25476 -11.05204 -10.95735 -10.79938 -10.69232 -10.59503 -10.46720 -10.25511 -9.93900 -9.92641 -9.79715 -9.56115 -9.41009 -8.60966 -8.51883 -8.31791 -6.81044 -5.80456 -3.30497 0.22133 0.96504 1.62601 1.95514 2.35984 2.81293 3.08324 3.33979 3.41574 3.43245 3.57625 4.02458 4.28128 4.41721 4.42806 4.51602 4.54106 4.84352 4.86976 4.98521 5.08295 5.20364 5.23415 5.24335 5.33370 5.44314 5.47620 5.50285 5.63127 5.68702 5.79952 5.81726 5.88223 5.96283 6.02445 6.18803 6.23863 6.27492 6.34824 6.51528 6.59967 6.74829 6.80238 6.84156 7.19072 7.34161 7.65282 7.70206 7.75662 8.24350 8.34592 9.16323 9.77029 10.27310 11.24874 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.002043 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.965286 B =13700.555320 C =14189.807303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.905 5.905 7 Si 0.907 3.093 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.172 3.828 12 H 0.080 0.920 13 C -0.152 4.152 14 C 0.090 3.910 15 N -0.604 5.604 16 C 0.567 3.433 17 O -0.542 6.542 18 C -0.131 4.131 19 C -0.035 4.035 20 C -0.150 4.150 21 C 0.177 3.823 22 N -0.326 5.326 23 C 0.053 3.947 24 C -0.260 4.260 25 C 0.055 3.945 26 N -0.287 5.287 27 C -0.127 4.127 28 C -0.074 4.074 29 C 0.086 3.914 30 H 0.028 0.972 31 H 0.049 0.951 32 H -0.001 1.001 33 H 0.253 0.747 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.145 0.855 39 H 0.135 0.865 40 H 0.179 0.821 41 H 0.155 0.845 42 H 0.190 0.810 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.064 0.936 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 -26.589 -1.099 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.307 5.307 3 C -0.390 4.390 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.737 3.263 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.098 0.902 13 C -0.192 4.192 14 C -0.033 4.033 15 N -0.336 5.336 16 C 0.356 3.644 17 O -0.421 6.421 18 C -0.135 4.135 19 C -0.055 4.055 20 C -0.171 4.171 21 C 0.084 3.916 22 N -0.101 5.101 23 C -0.089 4.089 24 C -0.288 4.288 25 C -0.132 4.132 26 N -0.105 5.105 27 C -0.147 4.147 28 C -0.093 4.093 29 C -0.037 4.037 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.197 0.803 41 H 0.173 0.827 42 H 0.207 0.793 43 H 0.161 0.839 44 H 0.169 0.831 45 H 0.082 0.918 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.868 -25.322 -0.828 25.350 hybrid contribution -0.222 0.065 0.140 0.270 sum 0.646 -25.257 -0.687 25.274 Atomic orbital electron populations 1.20803 0.82473 0.96192 0.98920 1.43844 1.01857 0.99839 1.85122 1.19255 1.00348 0.86055 1.33345 0.91254 1.25139 0.97537 0.98898 0.97705 1.70057 1.17883 1.27908 1.39117 0.86142 0.78908 0.83902 0.77320 1.20217 1.21623 1.21580 1.21332 0.96447 0.86069 0.89991 0.90214 1.23412 1.03089 0.92345 1.00361 1.22754 0.99271 0.99905 0.81406 1.48466 1.65517 1.07830 1.11811 1.17804 0.77617 0.83205 0.85744 1.90783 1.50454 1.85539 1.15338 1.20037 1.00853 0.94883 0.97739 1.21031 0.95821 0.90552 0.98079 1.20712 1.01798 0.98430 0.96141 1.17738 0.97965 0.82291 0.93616 1.46033 1.32507 1.08982 1.22624 1.22829 0.97427 0.87615 1.00980 1.21641 1.06378 1.01234 0.99587 1.24126 0.96707 0.92702 0.99696 1.77457 1.17529 1.14064 1.01453 1.20832 0.99888 0.92115 1.01868 1.21879 0.97532 0.96475 0.93381 1.22875 1.02564 0.79025 0.99279 0.95386 0.93248 0.98282 0.93660 0.90459 0.90171 0.90549 0.91130 0.83767 0.84677 0.80344 0.82737 0.79280 0.83914 0.83053 0.91793 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.67 59.85 0.46 4.31 16 2 N -0.59 -14.04 2.93 -171.39 -0.50 -14.54 16 3 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 4 H 0.07 1.79 7.84 -52.48 -0.41 1.38 16 5 C 0.01 0.16 5.18 -17.43 -0.09 0.07 16 6 N -0.91 -25.68 10.63 55.49 0.59 -25.09 16 7 Si 0.91 21.34 29.56 -169.99 -5.02 16.31 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.30 3.43 -66.09 -0.23 3.07 16 12 H 0.08 1.50 7.95 -51.93 -0.41 1.08 16 13 C -0.15 -2.46 6.65 -24.59 -0.16 -2.62 16 14 C 0.09 1.16 5.00 -2.53 -0.01 1.15 16 15 N -0.60 -9.50 3.33 -171.46 -0.57 -10.07 16 16 C 0.57 9.13 7.65 -12.41 -0.09 9.03 16 17 O -0.54 -10.51 16.95 5.30 0.09 -10.42 16 18 C -0.13 -1.67 5.71 -104.95 -0.60 -2.27 16 19 C -0.04 -0.39 9.58 -39.22 -0.38 -0.76 16 20 C -0.15 -1.37 9.44 -39.46 -0.37 -1.75 16 21 C 0.18 1.84 6.69 -83.60 -0.56 1.28 16 22 N -0.33 -3.30 3.81 -10.55 -0.04 -3.34 16 23 C 0.05 0.40 10.82 -16.83 -0.18 0.22 16 24 C -0.26 -1.74 10.80 -39.99 -0.43 -2.17 16 25 C 0.06 0.43 12.02 -17.34 -0.21 0.22 16 26 N -0.29 -3.07 11.85 30.64 0.36 -2.70 16 27 C -0.13 -1.33 9.64 -39.47 -0.38 -1.72 16 28 C -0.07 -0.80 7.94 -39.22 -0.31 -1.11 16 29 C 0.09 1.57 6.44 -2.90 -0.02 1.55 16 30 H 0.03 0.72 7.48 -51.93 -0.39 0.33 16 31 H 0.05 1.30 7.16 -51.92 -0.37 0.92 16 32 H 0.00 -0.03 6.28 -51.93 -0.33 -0.35 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.08 1.39 7.22 -51.93 -0.38 1.01 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 0.87 6.24 -51.93 -0.32 0.55 16 37 H 0.07 0.76 7.21 -51.93 -0.37 0.39 16 38 H 0.14 1.51 7.86 -52.49 -0.41 1.10 16 39 H 0.14 0.83 6.72 -52.49 -0.35 0.48 16 40 H 0.18 0.74 7.04 -52.49 -0.37 0.37 16 41 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.19 0.81 8.06 -52.48 -0.42 0.38 16 43 H 0.14 1.42 7.68 -52.49 -0.40 1.02 16 44 H 0.15 1.44 4.49 -52.49 -0.24 1.21 16 45 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.08 1.53 6.14 -51.93 -0.32 1.21 16 LS Contribution 372.64 15.07 5.62 5.62 Total: -1.00 -33.08 372.64 -9.10 -42.18 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -5.90 Total: 0.59 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.71 Total: 1.47 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.16 Total: -55.75 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.08 -9.10 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971684571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.194 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds