Wall clock time and date at job start Sat Apr 11 2020 06:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00194 * 2 1 4 4 H 1.08003 * 119.99964 * 153.66177 * 3 2 1 5 5 C 1.38809 * 119.99974 * 333.65717 * 3 2 1 6 6 N 1.31620 * 120.00130 * 352.84555 * 5 3 2 7 7 Si 1.86802 * 120.00044 * 172.84284 * 5 3 2 8 8 H 1.48500 * 109.47043 * 0.02562 * 7 5 3 9 9 H 1.48499 * 109.47158 * 119.99905 * 7 5 3 10 10 H 1.48496 * 109.47377 * 240.00398 * 7 5 3 11 11 C 1.46505 * 119.99723 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.63981 * 180.69452 * 11 2 1 13 13 C 1.55156 * 110.72259 * 57.55614 * 11 2 1 14 14 C 1.54901 * 101.58423 * 206.13507 * 13 11 2 15 15 N 1.47427 * 104.83123 * 37.01063 * 14 13 11 16 16 C 1.34777 * 125.64861 * 155.91370 * 15 14 13 17 17 O 1.21575 * 119.99735 * 177.91491 * 16 15 14 18 18 C 1.47664 * 119.99980 * 357.91238 * 16 15 14 19 19 C 1.39707 * 120.07498 * 205.85777 * 18 16 15 20 20 C 1.37729 * 119.92059 * 179.78870 * 19 18 16 21 21 C 1.39061 * 120.07475 * 0.46655 * 20 19 18 22 22 N 1.39830 * 119.92285 * 179.75980 * 21 20 19 23 23 C 1.35844 * 126.09989 * 359.74995 * 22 21 20 24 24 C 1.35284 * 107.61270 * 179.83631 * 23 22 21 25 25 C 1.39949 * 107.96859 * 0.41544 * 24 23 22 26 26 N 1.30826 * 108.37075 * 359.74406 * 25 24 23 27 27 C 1.39058 * 120.15609 * 359.78900 * 21 20 19 28 28 C 1.37720 * 120.08043 * 359.97438 * 27 21 20 29 29 C 1.47318 * 108.73590 * 335.71219 * 15 14 13 30 30 H 1.08992 * 109.47720 * 88.50270 * 1 2 3 31 31 H 1.09007 * 109.46678 * 328.50167 * 1 2 3 32 32 H 1.09005 * 109.47377 * 208.50797 * 1 2 3 33 33 H 0.97003 * 119.99848 * 180.02562 * 6 5 3 34 34 H 1.08999 * 111.00251 * 324.21091 * 13 11 2 35 35 H 1.09000 * 111.00108 * 88.05500 * 13 11 2 36 36 H 1.08999 * 110.37007 * 155.84658 * 14 13 11 37 37 H 1.09002 * 110.36731 * 278.16926 * 14 13 11 38 38 H 1.08000 * 120.04379 * 0.02849 * 19 18 16 39 39 H 1.07996 * 119.96706 * 180.23331 * 20 19 18 40 40 H 1.07997 * 126.19061 * 359.97438 * 23 22 21 41 41 H 1.08000 * 126.01277 * 180.16123 * 24 23 22 42 42 H 1.08010 * 125.81519 * 179.76151 * 25 24 23 43 43 H 1.07997 * 119.96032 * 179.97438 * 27 21 20 44 44 H 1.08001 * 120.04147 * 179.97438 * 28 27 21 45 45 H 1.08998 * 110.06786 * 241.87715 * 29 15 14 46 46 H 1.09001 * 109.84882 * 120.61441 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1456 1.2344 0.4150 5 6 1.5638 2.3256 -0.5334 6 7 0.4119 2.2396 -1.1645 7 14 2.4100 3.9814 -0.3556 8 1 3.6831 3.8092 0.3892 9 1 2.6963 4.5381 -1.7022 10 1 1.5237 4.9131 0.3871 11 6 2.1974 -1.2688 -0.0006 12 1 3.2729 -1.0916 0.0119 13 6 1.7977 -2.1330 -1.2256 14 6 2.0900 -3.5628 -0.7064 15 7 1.7028 -3.5343 0.7158 16 6 1.3465 -4.6038 1.4545 17 8 1.0818 -4.4675 2.6332 18 6 1.2776 -5.9411 0.8321 19 6 0.4363 -6.9198 1.3670 20 6 0.3712 -8.1646 0.7813 21 6 1.1489 -8.4509 -0.3353 22 7 1.0840 -9.7174 -0.9244 23 6 0.3129 -10.7554 -0.5079 24 6 0.5376 -11.7940 -1.3452 25 6 1.4794 -11.3858 -2.2964 26 7 1.8071 -10.1443 -2.0459 27 6 1.9914 -7.4809 -0.8672 28 6 2.0578 -6.2324 -0.2896 29 6 1.7743 -2.1441 1.1980 30 1 -0.3634 0.0268 -1.0272 31 1 -0.3633 0.8763 0.5370 32 1 -0.3634 -0.9031 0.4905 33 1 0.0027 3.0360 -1.5376 34 1 0.7404 -2.0114 -1.4612 35 1 2.4185 -1.8965 -2.0898 36 1 1.4896 -4.2934 -1.2484 37 1 3.1507 -3.7932 -0.8063 38 1 -0.1653 -6.6993 2.2365 39 1 -0.2818 -8.9205 1.1920 40 1 -0.3595 -10.7513 0.3371 41 1 0.0749 -12.7681 -1.2870 42 1 1.8692 -11.9924 -3.1006 43 1 2.5943 -7.7068 -1.7343 44 1 2.7127 -5.4796 -0.7030 45 1 2.5126 -2.0623 1.9956 46 1 0.7965 -1.8276 1.5612 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971684571.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:55 Heat of formation + Delta-G solvation = 104.813741 kcal Electronic energy + Delta-G solvation = -28443.739760 eV Core-core repulsion = 24529.091143 eV Total energy + Delta-G solvation = -3914.648617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.48949 -41.51425 -39.73075 -38.75207 -36.62700 -34.69468 -33.46968 -32.43424 -31.49231 -31.14235 -30.43757 -29.10674 -28.07730 -26.04143 -24.75054 -24.22823 -23.71247 -21.92737 -21.53869 -21.05787 -20.73058 -19.22473 -18.94835 -18.42885 -17.62080 -17.04690 -16.55097 -16.29571 -16.25898 -15.92879 -15.59245 -15.26746 -15.14676 -15.00235 -14.69703 -14.52196 -14.43230 -14.18021 -13.98080 -13.70749 -13.64510 -13.45729 -13.21859 -12.98615 -12.83357 -12.61876 -12.41837 -12.26291 -12.12834 -12.03963 -11.81485 -11.68617 -11.56303 -11.35416 -11.10192 -10.65314 -10.21283 -10.15719 -9.74651 -9.12211 -8.77946 -7.85433 -5.37049 -0.57225 0.19485 0.92867 1.33976 1.47026 1.48785 1.58651 1.73120 1.85203 1.88911 2.50106 2.68178 3.27620 3.36616 3.40636 3.54359 3.68861 3.78197 3.87479 3.94277 4.02028 4.12393 4.23605 4.26243 4.29818 4.34198 4.47939 4.59278 4.61653 4.72012 4.74007 4.86140 4.91812 4.94148 4.96130 5.06640 5.10082 5.12418 5.20934 5.25496 5.33757 5.37689 5.48886 5.64017 5.68613 5.69337 6.11515 6.32565 6.44518 6.60299 6.99882 7.13310 7.81876 8.28408 9.18999 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.027445 B = 0.002043 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.965286 B =13700.555320 C =14189.807303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.603 5.603 3 C -0.265 4.265 4 H 0.075 0.925 5 C -0.050 4.050 6 N -0.937 5.937 7 Si 0.971 3.029 8 H -0.265 1.265 9 H -0.290 1.290 10 H -0.295 1.295 11 C 0.166 3.834 12 H 0.087 0.913 13 C -0.143 4.143 14 C 0.098 3.902 15 N -0.606 5.606 16 C 0.566 3.434 17 O -0.585 6.585 18 C -0.154 4.154 19 C -0.038 4.038 20 C -0.141 4.141 21 C 0.177 3.823 22 N -0.344 5.344 23 C 0.044 3.956 24 C -0.259 4.259 25 C 0.056 3.944 26 N -0.331 5.331 27 C -0.135 4.135 28 C -0.065 4.065 29 C 0.098 3.902 30 H 0.007 0.993 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.248 0.752 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.144 0.856 39 H 0.168 0.832 40 H 0.210 0.790 41 H 0.183 0.817 42 H 0.218 0.782 43 H 0.146 0.854 44 H 0.164 0.836 45 H 0.060 0.940 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -29.614 -1.738 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.324 5.324 3 C -0.395 4.395 4 H 0.092 0.908 5 C -0.245 4.245 6 N -0.583 5.583 7 Si 0.799 3.201 8 H -0.189 1.189 9 H -0.217 1.217 10 H -0.222 1.222 11 C 0.057 3.943 12 H 0.105 0.895 13 C -0.183 4.183 14 C -0.023 4.023 15 N -0.337 5.337 16 C 0.358 3.642 17 O -0.467 6.467 18 C -0.157 4.157 19 C -0.058 4.058 20 C -0.161 4.161 21 C 0.084 3.916 22 N -0.120 5.120 23 C -0.096 4.096 24 C -0.287 4.287 25 C -0.132 4.132 26 N -0.149 5.149 27 C -0.154 4.154 28 C -0.084 4.084 29 C -0.027 4.027 30 H 0.025 0.975 31 H 0.037 0.963 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.162 0.838 39 H 0.185 0.815 40 H 0.226 0.774 41 H 0.200 0.800 42 H 0.234 0.766 43 H 0.164 0.836 44 H 0.181 0.819 45 H 0.079 0.921 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.697 -28.405 -1.485 28.494 hybrid contribution -0.479 0.773 0.328 0.966 sum 1.218 -27.632 -1.157 27.683 Atomic orbital electron populations 1.20444 0.83125 0.95536 0.97247 1.44000 1.01791 1.01072 1.85533 1.19592 1.00422 0.87183 1.32323 0.90770 1.25883 0.98329 1.02162 0.98110 1.70214 1.19295 1.28303 1.40510 0.85149 0.78185 0.79767 0.76992 1.18902 1.21736 1.22171 1.21501 0.96304 0.84717 0.91731 0.89527 1.23251 1.01984 0.93770 0.99329 1.22915 1.01684 0.98131 0.79608 1.48499 1.65616 1.06732 1.12896 1.18345 0.76380 0.84239 0.85278 1.90750 1.52359 1.86332 1.17236 1.19826 1.03266 0.93408 0.99231 1.21123 0.95527 0.90975 0.98130 1.20920 1.01607 0.98223 0.95386 1.17966 0.97413 0.82688 0.93565 1.46144 1.33498 1.09277 1.23083 1.23508 0.97199 0.87024 1.01840 1.22077 1.05687 1.02217 0.98684 1.24764 0.96167 0.92078 1.00166 1.77423 1.19189 1.15690 1.02599 1.20899 1.00309 0.92113 1.02119 1.21883 0.97033 0.96915 0.92522 1.22506 1.00879 0.80618 0.98687 0.97485 0.96305 0.96437 0.94221 0.92475 0.89005 0.88315 0.87814 0.83798 0.81495 0.77355 0.79961 0.76561 0.83611 0.81876 0.92120 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.05 7.67 127.77 0.98 10.03 16 2 N -0.60 -29.37 2.93 -696.14 -2.04 -31.41 16 3 C -0.27 -14.15 9.58 84.03 0.81 -13.34 16 4 H 0.07 3.81 7.84 -2.91 -0.02 3.78 16 5 C -0.05 -2.72 5.18 84.86 0.44 -2.28 16 6 N -0.94 -54.65 10.63 21.65 0.23 -54.42 16 7 Si 0.97 44.40 29.56 68.60 2.03 46.43 16 8 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 9 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 11 C 0.17 6.33 3.43 46.18 0.16 6.48 16 12 H 0.09 3.17 7.95 -2.39 -0.02 3.15 16 13 C -0.14 -4.49 6.65 31.98 0.21 -4.28 16 14 C 0.10 2.33 5.00 86.85 0.43 2.77 16 15 N -0.61 -18.65 3.33 -814.65 -2.72 -21.36 16 16 C 0.57 18.08 7.65 86.73 0.66 18.74 16 17 O -0.58 -23.11 16.95 -3.95 -0.07 -23.17 16 18 C -0.15 -3.73 5.71 -20.08 -0.11 -3.85 16 19 C -0.04 -0.78 9.58 22.50 0.22 -0.57 16 20 C -0.14 -2.24 9.44 22.35 0.21 -2.03 16 21 C 0.18 3.31 6.69 38.26 0.26 3.57 16 22 N -0.34 -6.17 3.81 -187.28 -0.71 -6.88 16 23 C 0.04 0.52 10.82 83.39 0.90 1.42 16 24 C -0.26 -2.59 10.80 22.00 0.24 -2.35 16 25 C 0.06 0.71 12.02 85.26 1.02 1.74 16 26 N -0.33 -6.46 11.85 -56.97 -0.67 -7.13 16 27 C -0.13 -2.58 9.64 22.34 0.22 -2.36 16 28 C -0.06 -1.28 7.94 22.50 0.18 -1.10 16 29 C 0.10 3.58 6.44 86.67 0.56 4.14 16 30 H 0.01 0.37 7.48 -2.39 -0.02 0.35 16 31 H 0.02 1.01 7.16 -2.38 -0.02 0.99 16 32 H 0.02 0.78 6.28 -2.38 -0.01 0.77 16 33 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 34 H 0.06 2.04 7.22 -2.39 -0.02 2.02 16 35 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.10 1.99 6.24 -2.39 -0.01 1.97 16 37 H 0.10 1.86 7.21 -2.39 -0.02 1.84 16 38 H 0.14 2.93 7.86 -2.91 -0.02 2.91 16 39 H 0.17 1.46 6.72 -2.91 -0.02 1.44 16 40 H 0.21 0.88 7.04 -2.91 -0.02 0.85 16 41 H 0.18 0.68 8.06 -2.91 -0.02 0.66 16 42 H 0.22 1.21 8.06 -2.91 -0.02 1.18 16 43 H 0.15 2.68 7.68 -2.91 -0.02 2.66 16 44 H 0.16 2.66 4.49 -2.91 -0.01 2.65 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.05 2.06 6.14 -2.39 -0.01 2.04 16 Total: -1.00 -74.36 372.64 4.44 -69.92 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 1.01 Total: 11.30 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 7.38 Total: 16.73 kcal Atomic # 7 Polarization: -115.29 SS G_CDS: -5.91 Total: -121.20 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.07 Total: -23.17 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.36 4.44 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971684571.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.731 kcal (2) G-P(sol) polarization free energy of solvation -74.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds