Wall clock time and date at job start Sat Apr 11 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99260 * 2 1 4 4 H 1.08002 * 119.99636 * 203.57601 * 3 2 1 5 5 C 1.38805 * 120.00512 * 23.57950 * 3 2 1 6 6 N 1.31616 * 119.99989 * 15.11742 * 5 3 2 7 7 Si 1.86796 * 120.00110 * 195.11628 * 5 3 2 8 8 H 1.48494 * 109.47410 * 89.99969 * 7 5 3 9 9 H 1.48507 * 109.47378 * 210.00266 * 7 5 3 10 10 H 1.48501 * 109.47349 * 330.00012 * 7 5 3 11 11 C 1.46494 * 120.00376 * 180.27330 * 2 1 3 12 12 H 1.08993 * 110.64178 * 180.69704 * 11 2 1 13 13 C 1.55160 * 110.71790 * 57.55861 * 11 2 1 14 14 C 1.54908 * 101.58414 * 206.13661 * 13 11 2 15 15 N 1.47430 * 104.83070 * 37.00497 * 14 13 11 16 16 C 1.34773 * 125.64592 * 155.83271 * 15 14 13 17 17 O 1.21642 * 120.00274 * 185.22057 * 16 15 14 18 18 C 1.47082 * 120.00016 * 5.22463 * 16 15 14 19 19 C 1.38070 * 126.49614 * 6.31767 * 18 16 15 20 20 C 1.39246 * 107.69766 * 179.97438 * 19 18 16 21 21 N 1.31014 * 108.82829 * 0.02562 * 20 19 18 22 22 N 1.36944 * 126.49518 * 186.00103 * 18 16 15 23 23 C 1.40019 * 126.16943 * 0.02562 * 22 18 16 24 24 C 1.38885 * 120.06809 * 315.07340 * 23 22 18 25 25 C 1.38113 * 119.92204 * 179.76346 * 24 23 22 26 26 C 1.38290 * 120.07587 * 0.48676 * 25 24 23 27 27 C 1.38289 * 120.13677 * 359.78907 * 26 25 24 28 28 C 1.38107 * 120.07436 * 359.95290 * 27 26 25 29 29 C 1.47320 * 108.73669 * 335.72427 * 15 14 13 30 30 H 1.09007 * 109.47277 * 274.82806 * 1 2 3 31 31 H 1.08997 * 109.47370 * 34.82881 * 1 2 3 32 32 H 1.08999 * 109.46897 * 154.83549 * 1 2 3 33 33 H 0.97000 * 120.00368 * 180.02562 * 6 5 3 34 34 H 1.09003 * 111.00409 * 324.21089 * 13 11 2 35 35 H 1.08999 * 111.00400 * 88.02003 * 13 11 2 36 36 H 1.08995 * 110.36923 * 155.84769 * 14 13 11 37 37 H 1.09008 * 110.36302 * 278.06670 * 14 13 11 38 38 H 1.08006 * 126.15086 * 359.97438 * 19 18 16 39 39 H 1.08000 * 125.58976 * 180.02562 * 20 19 18 40 40 H 1.07994 * 120.04005 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.96049 * 180.22488 * 25 24 23 42 42 H 1.07998 * 119.92759 * 179.76544 * 26 25 24 43 43 H 1.08005 * 119.96162 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.03539 * 179.97438 * 28 27 26 45 45 H 1.09005 * 110.05402 * 241.86844 * 29 15 14 46 46 H 1.08997 * 109.84729 * 120.60749 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1620 1.2251 -0.3741 5 6 1.5424 2.3379 0.4808 6 7 0.4444 2.2514 1.2014 7 14 2.2837 4.0109 0.1053 8 1 1.7090 4.5343 -1.1598 9 1 1.9756 4.9491 1.2145 10 1 3.7560 3.8793 -0.0370 11 6 2.1976 -1.2686 -0.0061 12 1 3.2729 -1.0914 0.0072 13 6 1.7979 -2.1274 -1.2349 14 6 2.0903 -3.5595 -0.7220 15 7 1.7032 -3.5373 0.7004 16 6 1.3455 -4.6098 1.4340 17 8 0.9533 -4.4623 2.5759 18 6 1.4295 -5.9587 0.8538 19 6 1.9656 -6.2927 -0.3741 20 6 1.8436 -7.6711 -0.5284 21 7 1.2661 -8.1666 0.5381 22 7 0.9963 -7.1223 1.4315 23 6 0.3896 -7.2454 2.6874 24 6 0.9144 -6.5717 3.7827 25 6 0.3107 -6.6914 5.0192 26 6 -0.8091 -7.4889 5.1694 27 6 -1.3305 -8.1655 4.0819 28 6 -0.7347 -8.0459 2.8417 29 6 1.7744 -2.1491 1.1886 30 1 -0.3634 0.0865 1.0241 31 1 -0.3634 0.8435 -0.5869 32 1 -0.3633 -0.9301 -0.4370 33 1 0.0199 3.0563 1.5371 34 1 0.7406 -2.0049 -1.4700 35 1 2.4183 -1.8867 -2.0982 36 1 1.4899 -4.2878 -1.2672 37 1 3.1508 -3.7901 -0.8246 38 1 2.4011 -5.6078 -1.0866 39 1 2.1714 -8.2389 -1.3867 40 1 1.7914 -5.9523 3.6671 41 1 0.7161 -6.1648 5.8706 42 1 -1.2770 -7.5837 6.1381 43 1 -2.2049 -8.7879 4.2025 44 1 -1.1423 -8.5749 1.9929 45 1 2.5128 -2.0709 1.9866 46 1 0.7966 -1.8344 1.5531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971802448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:08 Heat of formation + Delta-G solvation = 128.430740 kcal Electronic energy + Delta-G solvation = -29387.888007 eV Core-core repulsion = 25474.263499 eV Total energy + Delta-G solvation = -3913.624508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.75852 -39.53520 -39.01177 -37.47538 -34.97544 -33.53228 -31.99721 -31.21321 -30.60583 -29.84669 -29.13915 -27.77808 -26.09620 -24.77026 -23.44700 -23.05646 -22.59538 -21.59494 -20.93443 -19.65947 -19.29320 -17.77038 -17.12212 -16.63128 -16.33036 -16.01269 -15.58369 -15.54787 -14.91625 -14.82446 -14.30589 -14.11527 -13.94055 -13.64836 -13.49590 -13.41457 -13.22944 -12.87481 -12.60241 -12.53399 -12.26672 -11.95294 -11.75449 -11.59651 -11.28754 -11.02805 -10.95972 -10.81208 -10.61664 -10.53882 -10.33045 -10.18723 -10.02391 -9.91192 -9.87335 -9.25116 -8.98965 -8.62689 -8.46529 -8.38212 -6.87068 -5.81646 -3.30084 0.59381 1.26962 1.43150 2.00759 2.36846 3.08260 3.19500 3.33964 3.40586 3.41916 3.59205 4.27524 4.41760 4.45642 4.77409 4.78766 4.88984 4.97800 5.00131 5.16865 5.21171 5.24375 5.28652 5.42289 5.43224 5.46139 5.52871 5.57988 5.71918 5.82026 5.86055 5.91109 6.15365 6.18100 6.24651 6.28127 6.35548 6.38077 6.40236 6.54398 6.55600 6.74429 6.78764 6.97333 7.25472 7.34330 7.56984 7.64887 7.72887 8.11410 8.29608 9.12243 9.74960 10.23980 11.22520 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.002763 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.731261 B =10131.392151 C =11348.026603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.584 5.584 3 C -0.265 4.265 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.900 5.900 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.154 4.154 14 C 0.088 3.912 15 N -0.591 5.591 16 C 0.585 3.415 17 O -0.530 6.530 18 C 0.047 3.953 19 C -0.230 4.230 20 C 0.043 3.957 21 N -0.271 5.271 22 N -0.293 5.293 23 C 0.131 3.869 24 C -0.064 4.064 25 C -0.111 4.111 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.102 4.102 29 C 0.090 3.910 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.003 0.997 33 H 0.254 0.746 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.065 0.935 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -20.486 -0.900 20.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.304 5.304 3 C -0.394 4.394 4 H 0.089 0.911 5 C -0.193 4.193 6 N -0.544 5.544 7 Si 0.736 3.264 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.194 4.194 14 C -0.035 4.035 15 N -0.324 5.324 16 C 0.371 3.629 17 O -0.408 6.408 18 C -0.081 4.081 19 C -0.260 4.260 20 C -0.141 4.141 21 N -0.093 5.093 22 N -0.071 5.071 23 C 0.041 3.959 24 C -0.084 4.084 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.122 4.122 29 C -0.034 4.034 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.190 0.810 39 H 0.210 0.790 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.146 0.854 45 H 0.083 0.917 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.297 -21.308 0.479 21.316 hybrid contribution 0.567 1.659 -0.659 1.873 sum 0.864 -19.649 -0.180 19.669 Atomic orbital electron populations 1.20804 0.82504 0.95728 0.99654 1.43916 1.01832 0.99877 1.84747 1.19207 0.99094 0.85202 1.35928 0.91128 1.25065 0.98069 0.98722 0.97417 1.70076 1.21022 1.27598 1.35700 0.86233 0.78715 0.83924 0.77495 1.21399 1.21732 1.20379 1.21379 0.96557 0.85889 0.89967 0.90105 1.23407 1.03031 0.92781 1.00229 1.22812 0.99990 0.99612 0.81098 1.48311 1.64690 1.07525 1.11899 1.16636 0.79000 0.82079 0.85189 1.90855 1.46907 1.85473 1.17528 1.21273 1.03152 0.88539 0.95164 1.22561 1.09233 0.96602 0.97583 1.23896 0.98578 0.94284 0.97346 1.77491 1.20128 1.10478 1.01194 1.46003 1.44505 1.03512 1.13090 1.17395 0.94611 1.02457 0.81457 1.21222 1.00420 0.96125 0.90656 1.21015 0.96281 0.98835 0.96862 1.21273 0.96158 0.96528 0.98979 1.20959 1.00311 1.00579 0.91980 1.20970 0.93786 0.98849 0.98588 1.23093 1.02887 0.77800 0.99608 0.94874 0.93953 0.97832 0.93546 0.90390 0.90063 0.90031 0.90859 0.81024 0.78955 0.84577 0.85131 0.85546 0.85305 0.85432 0.91670 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.71 7.64 59.85 0.46 4.17 16 2 N -0.58 -13.66 2.93 -171.39 -0.50 -14.16 16 3 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 4 H 0.07 1.77 7.86 -52.49 -0.41 1.36 16 5 C 0.01 0.18 5.05 -17.43 -0.09 0.09 16 6 N -0.90 -25.56 10.87 55.49 0.60 -24.96 16 7 Si 0.91 21.11 29.58 -169.99 -5.03 16.08 16 8 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 C 0.17 3.20 3.43 -66.10 -0.23 2.97 16 12 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 13 C -0.15 -2.24 6.60 -24.58 -0.16 -2.41 16 14 C 0.09 1.06 5.11 -2.53 -0.01 1.05 16 15 N -0.59 -9.26 3.33 -171.67 -0.57 -9.83 16 16 C 0.58 9.73 7.69 -12.68 -0.10 9.63 16 17 O -0.53 -10.13 12.80 5.24 0.07 -10.07 16 18 C 0.05 0.68 6.72 -82.06 -0.55 0.13 16 19 C -0.23 -2.59 9.13 -39.27 -0.36 -2.95 16 20 C 0.04 0.45 11.96 -17.53 -0.21 0.24 16 21 N -0.27 -3.67 12.41 30.52 0.38 -3.29 16 22 N -0.29 -4.37 3.73 -7.08 -0.03 -4.40 16 23 C 0.13 1.93 6.01 -83.64 -0.50 1.42 16 24 C -0.06 -0.92 7.37 -39.39 -0.29 -1.21 16 25 C -0.11 -1.34 10.04 -39.61 -0.40 -1.73 16 26 C -0.11 -1.15 10.04 -39.54 -0.40 -1.55 16 27 C -0.12 -1.25 10.04 -39.61 -0.40 -1.65 16 28 C -0.10 -1.29 9.88 -39.39 -0.39 -1.68 16 29 C 0.09 1.65 6.53 -2.90 -0.02 1.63 16 30 H 0.03 0.87 7.26 -51.93 -0.38 0.49 16 31 H 0.04 1.07 7.41 -51.93 -0.39 0.69 16 32 H 0.00 0.07 6.30 -51.93 -0.33 -0.26 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.08 1.24 6.30 -51.93 -0.33 0.91 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.85 5.85 -51.93 -0.30 0.55 16 37 H 0.07 0.73 7.78 -51.92 -0.40 0.33 16 38 H 0.17 1.49 4.77 -52.48 -0.25 1.23 16 39 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.14 2.12 6.39 -52.49 -0.34 1.78 16 41 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 42 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 44 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.08 1.66 6.95 -51.93 -0.36 1.30 16 LS Contribution 369.49 15.07 5.57 5.57 Total: -1.00 -31.94 369.49 -9.29 -41.23 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -5.99 Total: 2.69 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -3.79 Total: 1.13 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.12 Total: -56.64 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.94 -9.29 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971802448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.660 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds