Wall clock time and date at job start Sat Apr 11 2020 06:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36942 * 119.99260 * 2 1 4 4 H 1.08002 * 119.99636 * 203.57601 * 3 2 1 5 5 C 1.38805 * 120.00512 * 23.57950 * 3 2 1 6 6 N 1.31616 * 119.99989 * 15.11742 * 5 3 2 7 7 Si 1.86796 * 120.00110 * 195.11628 * 5 3 2 8 8 H 1.48494 * 109.47410 * 89.99969 * 7 5 3 9 9 H 1.48507 * 109.47378 * 210.00266 * 7 5 3 10 10 H 1.48501 * 109.47349 * 330.00012 * 7 5 3 11 11 C 1.46494 * 120.00376 * 180.27330 * 2 1 3 12 12 H 1.08993 * 110.64178 * 180.69704 * 11 2 1 13 13 C 1.55160 * 110.71790 * 57.55861 * 11 2 1 14 14 C 1.54908 * 101.58414 * 206.13661 * 13 11 2 15 15 N 1.47430 * 104.83070 * 37.00497 * 14 13 11 16 16 C 1.34773 * 125.64592 * 155.83271 * 15 14 13 17 17 O 1.21642 * 120.00274 * 185.22057 * 16 15 14 18 18 C 1.47082 * 120.00016 * 5.22463 * 16 15 14 19 19 C 1.38070 * 126.49614 * 6.31767 * 18 16 15 20 20 C 1.39246 * 107.69766 * 179.97438 * 19 18 16 21 21 N 1.31014 * 108.82829 * 0.02562 * 20 19 18 22 22 N 1.36944 * 126.49518 * 186.00103 * 18 16 15 23 23 C 1.40019 * 126.16943 * 0.02562 * 22 18 16 24 24 C 1.38885 * 120.06809 * 315.07340 * 23 22 18 25 25 C 1.38113 * 119.92204 * 179.76346 * 24 23 22 26 26 C 1.38290 * 120.07587 * 0.48676 * 25 24 23 27 27 C 1.38289 * 120.13677 * 359.78907 * 26 25 24 28 28 C 1.38107 * 120.07436 * 359.95290 * 27 26 25 29 29 C 1.47320 * 108.73669 * 335.72427 * 15 14 13 30 30 H 1.09007 * 109.47277 * 274.82806 * 1 2 3 31 31 H 1.08997 * 109.47370 * 34.82881 * 1 2 3 32 32 H 1.08999 * 109.46897 * 154.83549 * 1 2 3 33 33 H 0.97000 * 120.00368 * 180.02562 * 6 5 3 34 34 H 1.09003 * 111.00409 * 324.21089 * 13 11 2 35 35 H 1.08999 * 111.00400 * 88.02003 * 13 11 2 36 36 H 1.08995 * 110.36923 * 155.84769 * 14 13 11 37 37 H 1.09008 * 110.36302 * 278.06670 * 14 13 11 38 38 H 1.08006 * 126.15086 * 359.97438 * 19 18 16 39 39 H 1.08000 * 125.58976 * 180.02562 * 20 19 18 40 40 H 1.07994 * 120.04005 * 359.97438 * 24 23 22 41 41 H 1.08003 * 119.96049 * 180.22488 * 25 24 23 42 42 H 1.07998 * 119.92759 * 179.76544 * 26 25 24 43 43 H 1.08005 * 119.96162 * 179.97438 * 27 26 25 44 44 H 1.07997 * 120.03539 * 179.97438 * 28 27 26 45 45 H 1.09005 * 110.05402 * 241.86844 * 29 15 14 46 46 H 1.08997 * 109.84729 * 120.60749 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1620 1.2251 -0.3741 5 6 1.5424 2.3379 0.4808 6 7 0.4444 2.2514 1.2014 7 14 2.2837 4.0109 0.1053 8 1 1.7090 4.5343 -1.1598 9 1 1.9756 4.9491 1.2145 10 1 3.7560 3.8793 -0.0370 11 6 2.1976 -1.2686 -0.0061 12 1 3.2729 -1.0914 0.0072 13 6 1.7979 -2.1274 -1.2349 14 6 2.0903 -3.5595 -0.7220 15 7 1.7032 -3.5373 0.7004 16 6 1.3455 -4.6098 1.4340 17 8 0.9533 -4.4623 2.5759 18 6 1.4295 -5.9587 0.8538 19 6 1.9656 -6.2927 -0.3741 20 6 1.8436 -7.6711 -0.5284 21 7 1.2661 -8.1666 0.5381 22 7 0.9963 -7.1223 1.4315 23 6 0.3896 -7.2454 2.6874 24 6 0.9144 -6.5717 3.7827 25 6 0.3107 -6.6914 5.0192 26 6 -0.8091 -7.4889 5.1694 27 6 -1.3305 -8.1655 4.0819 28 6 -0.7347 -8.0459 2.8417 29 6 1.7744 -2.1491 1.1886 30 1 -0.3634 0.0865 1.0241 31 1 -0.3634 0.8435 -0.5869 32 1 -0.3633 -0.9301 -0.4370 33 1 0.0199 3.0563 1.5371 34 1 0.7406 -2.0049 -1.4700 35 1 2.4183 -1.8867 -2.0982 36 1 1.4899 -4.2878 -1.2672 37 1 3.1508 -3.7901 -0.8246 38 1 2.4011 -5.6078 -1.0866 39 1 2.1714 -8.2389 -1.3867 40 1 1.7914 -5.9523 3.6671 41 1 0.7161 -6.1648 5.8706 42 1 -1.2770 -7.5837 6.1381 43 1 -2.2049 -8.7879 4.2025 44 1 -1.1423 -8.5749 1.9929 45 1 2.5128 -2.0709 1.9866 46 1 0.7966 -1.8344 1.5531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971802448.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:06 Heat of formation + Delta-G solvation = 109.581998 kcal Electronic energy + Delta-G solvation = -29388.705350 eV Core-core repulsion = 25474.263499 eV Total energy + Delta-G solvation = -3914.441850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.74471 -40.79773 -39.92299 -38.88583 -36.65103 -34.47561 -33.63013 -32.22273 -31.87267 -31.13936 -30.09196 -29.15914 -28.06621 -26.08013 -24.64951 -24.14005 -23.86046 -22.71131 -21.88592 -20.89120 -20.63980 -18.95470 -18.86190 -17.82949 -17.57163 -17.10845 -16.85573 -16.64034 -16.43407 -15.80872 -15.64991 -15.24181 -15.07700 -14.93529 -14.69187 -14.57658 -14.46902 -14.34604 -14.01868 -13.77484 -13.56420 -13.33005 -13.03938 -12.77387 -12.62257 -12.54961 -12.40914 -12.25916 -12.20560 -12.09623 -11.94787 -11.71647 -11.39929 -11.28987 -11.06748 -10.63274 -10.25931 -9.94093 -9.74796 -9.31438 -8.81764 -7.83809 -5.34470 -0.39123 0.33815 0.45155 1.01019 1.49152 1.49486 1.50011 1.58770 1.89952 2.04632 2.51590 2.68087 3.17961 3.29832 3.54503 3.61973 3.81751 3.88352 3.92076 3.96366 4.16298 4.17921 4.27544 4.28614 4.38649 4.39107 4.46911 4.53279 4.56608 4.63279 4.76311 4.81393 4.86157 4.96769 5.00787 5.13438 5.18610 5.26512 5.29661 5.32390 5.42984 5.46197 5.55162 5.64967 5.65603 5.67826 6.02762 6.30394 6.30988 6.46248 6.86888 7.11963 7.82942 8.28277 9.19061 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.002763 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.731261 B =10131.392151 C =11348.026603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.599 5.599 3 C -0.265 4.265 4 H 0.082 0.918 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.286 1.286 9 H -0.301 1.301 10 H -0.264 1.264 11 C 0.166 3.834 12 H 0.089 0.911 13 C -0.140 4.140 14 C 0.090 3.910 15 N -0.591 5.591 16 C 0.580 3.420 17 O -0.567 6.567 18 C 0.014 3.986 19 C -0.206 4.206 20 C 0.054 3.946 21 N -0.293 5.293 22 N -0.309 5.309 23 C 0.106 3.894 24 C -0.088 4.088 25 C -0.122 4.122 26 C -0.107 4.107 27 C -0.113 4.113 28 C -0.115 4.115 29 C 0.103 3.897 30 H -0.004 1.004 31 H 0.017 0.983 32 H 0.031 0.969 33 H 0.247 0.753 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.204 0.796 39 H 0.241 0.759 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.163 0.837 44 H 0.132 0.868 45 H 0.052 0.948 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -22.748 -3.157 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.320 5.320 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.213 1.213 9 H -0.228 1.228 10 H -0.188 1.188 11 C 0.057 3.943 12 H 0.107 0.893 13 C -0.180 4.180 14 C -0.031 4.031 15 N -0.324 5.324 16 C 0.368 3.632 17 O -0.447 6.447 18 C -0.112 4.112 19 C -0.236 4.236 20 C -0.129 4.129 21 N -0.114 5.114 22 N -0.088 5.088 23 C 0.016 3.984 24 C -0.109 4.109 25 C -0.140 4.140 26 C -0.126 4.126 27 C -0.132 4.132 28 C -0.135 4.135 29 C -0.022 4.022 30 H 0.014 0.986 31 H 0.036 0.964 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.221 0.779 39 H 0.257 0.743 40 H 0.130 0.870 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.180 0.820 44 H 0.150 0.850 45 H 0.071 0.929 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.428 -23.613 -1.818 23.726 hybrid contribution 0.259 2.235 0.038 2.250 sum 1.687 -21.378 -1.780 21.518 Atomic orbital electron populations 1.20438 0.83207 0.95893 0.97146 1.44095 1.01747 1.01154 1.85016 1.19627 0.99375 0.86199 1.34303 0.90068 1.25857 0.98830 1.02178 0.97951 1.70260 1.22792 1.27787 1.37627 0.85221 0.78663 0.79639 0.76632 1.21254 1.22827 1.18792 1.21609 0.96489 0.84427 0.91777 0.89276 1.23275 1.02664 0.93075 0.98955 1.23110 1.02627 0.98643 0.78719 1.48270 1.64723 1.06006 1.13360 1.17016 0.78254 0.83128 0.84839 1.90836 1.48432 1.86177 1.19287 1.21161 1.05802 0.87491 0.96792 1.22974 1.06929 0.97501 0.96174 1.24704 0.96553 0.94245 0.97434 1.77473 1.21039 1.10849 1.02085 1.46133 1.45413 1.03760 1.13456 1.17702 0.95615 1.03359 0.81748 1.21165 1.00584 0.97080 0.92040 1.21297 0.96992 0.99317 0.96442 1.21662 0.95170 0.95196 1.00523 1.21395 1.00685 1.00057 0.91020 1.21181 0.93549 0.98939 0.99801 1.22638 1.00254 0.79944 0.99374 0.98563 0.96418 0.95110 0.94365 0.91728 0.87345 0.87321 0.87296 0.77910 0.74347 0.87020 0.83968 0.82181 0.81953 0.84993 0.92927 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.71 7.64 127.77 0.98 9.69 16 2 N -0.60 -28.35 2.93 -696.15 -2.04 -30.39 16 3 C -0.27 -13.80 9.58 84.03 0.81 -13.00 16 4 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16 5 C -0.05 -2.88 5.05 84.86 0.43 -2.46 16 6 N -0.94 -55.52 10.87 21.65 0.24 -55.28 16 7 Si 0.97 43.95 29.58 68.60 2.03 45.98 16 8 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 11 C 0.17 6.00 3.43 46.18 0.16 6.16 16 12 H 0.09 3.08 7.94 -2.39 -0.02 3.06 16 13 C -0.14 -3.66 6.60 31.99 0.21 -3.45 16 14 C 0.09 1.85 5.11 86.85 0.44 2.29 16 15 N -0.59 -18.13 3.33 -815.28 -2.72 -20.84 16 16 C 0.58 19.61 7.69 86.56 0.67 20.27 16 17 O -0.57 -23.12 12.80 -4.16 -0.05 -23.17 16 18 C 0.01 0.41 6.72 40.63 0.27 0.68 16 19 C -0.21 -3.91 9.13 22.47 0.21 -3.70 16 20 C 0.05 0.94 11.96 85.06 1.02 1.96 16 21 N -0.29 -7.44 12.41 -57.34 -0.71 -8.15 16 22 N -0.31 -9.18 3.73 -176.31 -0.66 -9.84 16 23 C 0.11 3.22 6.01 38.14 0.23 3.45 16 24 C -0.09 -2.71 7.37 22.40 0.16 -2.55 16 25 C -0.12 -3.01 10.04 22.25 0.22 -2.79 16 26 C -0.11 -2.09 10.04 22.29 0.22 -1.86 16 27 C -0.11 -2.21 10.04 22.25 0.22 -1.98 16 28 C -0.11 -2.89 9.88 22.39 0.22 -2.66 16 29 C 0.10 3.89 6.53 86.67 0.57 4.45 16 30 H 0.00 -0.22 7.26 -2.38 -0.02 -0.24 16 31 H 0.02 0.91 7.41 -2.39 -0.02 0.89 16 32 H 0.03 1.30 6.30 -2.39 -0.02 1.28 16 33 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 34 H 0.06 1.89 6.30 -2.39 -0.02 1.88 16 35 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.11 1.73 5.85 -2.39 -0.01 1.71 16 37 H 0.11 1.57 7.78 -2.38 -0.02 1.56 16 38 H 0.20 2.36 4.77 -2.91 -0.01 2.34 16 39 H 0.24 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.11 3.85 6.39 -2.91 -0.02 3.84 16 41 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 42 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 43 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 45 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 46 H 0.04 1.76 6.95 -2.39 -0.02 1.75 16 Total: -1.00 -75.74 369.49 4.13 -71.61 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.01 Total: 15.59 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 7.04 Total: 14.49 kcal Atomic # 7 Polarization: -118.61 SS G_CDS: -5.89 Total: -124.50 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -75.74 4.13 -71.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971802448.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.197 kcal (2) G-P(sol) polarization free energy of solvation -75.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds