Wall clock time and date at job start Sat Apr 11 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99981 * 2 1 4 4 H 1.08002 * 119.99612 * 154.74741 * 3 2 1 5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2 8 8 H 1.48502 * 109.46887 * 85.00282 * 7 5 3 9 9 H 1.48494 * 109.47106 * 205.00158 * 7 5 3 10 10 H 1.48498 * 109.47139 * 325.00161 * 7 5 3 11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64349 * 181.68125 * 11 2 1 13 13 C 1.55151 * 110.71986 * 305.02634 * 11 2 1 14 14 C 1.54910 * 101.58227 * 153.86598 * 13 11 2 15 15 N 1.47424 * 104.83272 * 322.98547 * 14 13 11 16 16 C 1.34777 * 125.64675 * 204.09865 * 15 14 13 17 17 O 1.21583 * 119.99553 * 180.02562 * 16 15 14 18 18 C 1.47661 * 120.00489 * 0.03492 * 16 15 14 19 19 C 1.41530 * 126.44577 * 179.97438 * 18 16 15 20 20 C 1.35354 * 105.55866 * 180.02562 * 19 18 16 21 21 N 1.35860 * 107.12499 * 0.02562 * 20 19 18 22 22 C 1.40114 * 124.95984 * 179.97438 * 21 20 19 23 23 C 1.38858 * 120.06747 * 359.72306 * 22 21 20 24 24 C 1.38114 * 119.92927 * 179.72308 * 23 22 21 25 25 C 1.38287 * 120.06876 * 0.57485 * 24 23 22 26 26 C 1.38287 * 120.13370 * 359.69763 * 25 24 23 27 27 C 1.38107 * 120.07084 * 0.02562 * 26 25 24 28 28 N 1.28476 * 110.07738 * 359.72186 * 21 20 19 29 29 C 1.47023 * 108.70106 * 24.13058 * 15 14 13 30 30 H 1.09002 * 109.47421 * 84.50537 * 1 2 3 31 31 H 1.09002 * 109.47415 * 204.50557 * 1 2 3 32 32 H 1.09004 * 109.46808 * 324.50817 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.09003 * 111.00058 * 271.93615 * 13 11 2 35 35 H 1.09001 * 111.00953 * 35.78772 * 13 11 2 36 36 H 1.09002 * 110.36570 * 204.14938 * 14 13 11 37 37 H 1.09001 * 110.46582 * 81.87456 * 14 13 11 38 38 H 1.08004 * 127.21880 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.43675 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.03523 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.96824 * 180.29621 * 24 23 22 42 42 H 1.07995 * 119.92871 * 179.72534 * 25 24 23 43 43 H 1.07999 * 119.96114 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.03529 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.88274 * 239.52389 * 29 15 14 46 46 H 1.08994 * 109.87873 * 118.35802 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2305 0.3990 5 6 1.5552 2.3306 -0.5129 6 7 0.3045 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6232 8 1 3.3136 3.9337 -1.8847 9 1 1.5972 5.0752 -0.6074 10 1 3.4550 4.0149 0.5348 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0294 13 6 1.7506 -2.1611 1.1874 14 6 2.0637 -3.5786 0.6466 15 7 1.7323 -3.5167 -0.7886 16 6 1.4054 -4.5685 -1.5653 17 8 1.1503 -4.3992 -2.7419 18 6 1.3569 -5.9264 -0.9873 19 6 1.0315 -7.1210 -1.6730 20 6 1.1156 -8.1052 -0.7477 21 7 1.4723 -7.5214 0.4261 22 6 1.6643 -8.2021 1.6356 23 6 1.4843 -9.5777 1.6959 24 6 1.6800 -10.2466 2.8883 25 6 2.0431 -9.5463 4.0241 26 6 2.2176 -8.1756 3.9685 27 6 2.0290 -7.5018 2.7778 28 7 1.6128 -6.2547 0.2638 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3634 0.0984 -1.0229 31 1 -0.3634 -0.9351 0.4263 32 1 -0.3633 0.8368 0.5967 33 1 -0.1108 3.0959 -1.2802 34 1 2.3373 -1.9453 2.0804 35 1 0.6849 -2.0446 1.3844 36 1 1.4430 -4.3214 1.1476 37 1 3.1194 -3.8137 0.7823 38 1 0.7700 -7.2251 -2.7158 39 1 0.9327 -9.1570 -0.9115 40 1 1.1964 -10.1245 0.8102 41 1 1.5448 -11.3171 2.9348 42 1 2.1912 -10.0711 4.9563 43 1 2.5017 -7.6316 4.8571 44 1 2.1658 -6.4314 2.7349 45 1 0.8540 -1.7930 -1.6236 46 1 2.5847 -2.0190 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971858145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:12 Heat of formation + Delta-G solvation = 124.062502 kcal Electronic energy + Delta-G solvation = -28825.850255 eV Core-core repulsion = 24912.036326 eV Total energy + Delta-G solvation = -3913.813929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.08367 -39.70317 -39.22919 -37.28125 -34.74956 -33.91351 -31.97486 -31.61476 -30.70360 -29.85402 -29.48012 -27.77295 -26.01789 -25.00086 -23.72966 -23.15841 -22.30374 -21.52793 -21.08629 -19.39355 -19.09412 -18.50214 -17.03133 -16.88239 -16.66453 -16.39481 -15.68655 -15.39490 -15.22824 -14.80526 -14.69756 -14.10719 -13.94463 -13.79986 -13.48665 -13.26182 -13.23180 -13.06804 -12.52548 -12.42817 -12.16020 -12.13588 -11.82579 -11.66091 -11.48702 -10.94631 -10.81299 -10.76533 -10.49117 -10.43364 -10.31225 -10.22895 -9.91858 -9.81806 -9.75269 -9.54934 -9.46606 -8.60798 -8.50848 -8.19602 -6.76189 -5.74188 -3.22098 0.35899 0.80914 1.72838 2.02600 2.08703 3.26661 3.27652 3.39742 3.45182 3.45982 3.56196 4.01826 4.27630 4.42580 4.48260 4.50309 4.64229 4.79968 4.84065 5.01699 5.14333 5.18828 5.33350 5.40460 5.45188 5.46707 5.54286 5.65848 5.73368 5.76310 5.81490 5.92714 5.97077 5.99370 6.11942 6.22105 6.23960 6.40721 6.47184 6.60617 6.68644 6.77995 6.90979 6.94572 7.50143 7.64129 7.77526 7.86019 7.87244 8.39339 8.43454 9.24121 9.84283 10.34482 11.29919 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.002408 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.648781 B =11624.373114 C =12689.683085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.105 3.895 15 N -0.597 5.597 16 C 0.607 3.393 17 O -0.537 6.537 18 C 0.010 3.990 19 C -0.168 4.168 20 C -0.020 4.020 21 N -0.241 5.241 22 C 0.140 3.860 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.123 4.123 26 C -0.097 4.097 27 C -0.110 4.110 28 N -0.254 5.254 29 C 0.087 3.913 30 H 0.026 0.974 31 H -0.004 1.004 32 H 0.055 0.945 33 H 0.254 0.746 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.168 0.832 39 H 0.184 0.816 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.130 0.870 43 H 0.135 0.865 44 H 0.143 0.857 45 H 0.075 0.925 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.696 -27.489 9.316 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.310 5.310 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.212 1.212 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.195 4.195 14 C -0.019 4.019 15 N -0.329 5.329 16 C 0.393 3.607 17 O -0.413 6.413 18 C -0.152 4.152 19 C -0.196 4.196 20 C -0.159 4.159 21 N -0.023 5.023 22 C 0.049 3.951 23 C -0.151 4.151 24 C -0.116 4.116 25 C -0.142 4.142 26 C -0.115 4.115 27 C -0.129 4.129 28 N -0.087 5.087 29 C -0.037 4.037 30 H 0.044 0.956 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.186 0.814 39 H 0.201 0.799 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.153 0.847 44 H 0.161 0.839 45 H 0.093 0.907 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.720 -26.808 9.632 28.615 hybrid contribution 0.189 0.439 -0.985 1.095 sum 2.909 -26.369 8.647 27.902 Atomic orbital electron populations 1.20890 0.82175 0.95539 0.99465 1.43904 1.02041 0.99834 1.85234 1.19212 0.99321 0.86082 1.34309 0.91176 1.25199 0.96526 0.98896 0.98534 1.70101 1.11040 1.28120 1.45786 0.86251 0.79211 0.82887 0.78054 1.21249 1.21689 1.20565 1.21363 0.96353 0.85895 0.90094 0.90332 1.23381 1.02743 0.93459 0.99889 1.22451 1.00293 0.98735 0.80374 1.48361 1.65921 1.07592 1.11048 1.16494 0.77883 0.81317 0.85016 1.90801 1.50720 1.84444 1.15311 1.22184 1.06949 0.95857 0.90215 1.21853 1.06394 0.90054 1.01264 1.22986 1.07130 1.00766 0.85032 1.42854 1.47547 1.04433 1.07423 1.17698 1.02819 0.91158 0.83407 1.20858 1.03047 0.91360 0.99812 1.21003 0.98598 1.00250 0.91744 1.21321 0.99578 0.94448 0.98815 1.21148 0.98469 0.94475 0.97428 1.21056 0.99536 1.01459 0.90881 1.73712 1.19750 0.95272 1.19957 1.22973 1.02503 0.78290 0.99934 0.95588 0.98591 0.92659 0.93596 0.90514 0.90491 0.89884 0.91864 0.81404 0.79881 0.84928 0.84838 0.85232 0.84693 0.83934 0.90697 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 7.69 59.85 0.46 4.55 16 2 N -0.59 -14.67 2.94 -171.38 -0.50 -15.18 16 3 C -0.26 -7.05 9.61 -15.06 -0.14 -7.19 16 4 H 0.07 1.84 7.82 -52.49 -0.41 1.43 16 5 C 0.01 0.19 5.38 -17.43 -0.09 0.10 16 6 N -0.91 -26.36 10.11 55.49 0.56 -25.80 16 7 Si 0.91 21.76 29.56 -169.99 -5.02 16.74 16 8 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 C 0.17 3.54 3.44 -66.10 -0.23 3.31 16 12 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16 13 C -0.15 -2.61 6.59 -24.59 -0.16 -2.78 16 14 C 0.10 1.61 6.15 -2.53 -0.02 1.59 16 15 N -0.60 -10.86 3.33 -171.69 -0.57 -11.43 16 16 C 0.61 11.32 7.85 -12.41 -0.10 11.22 16 17 O -0.54 -11.55 17.25 5.29 0.09 -11.46 16 18 C 0.01 0.15 6.96 -82.76 -0.58 -0.43 16 19 C -0.17 -2.11 10.80 -39.36 -0.42 -2.53 16 20 C -0.02 -0.20 10.78 -16.80 -0.18 -0.38 16 21 N -0.24 -2.77 3.52 -10.55 -0.04 -2.81 16 22 C 0.14 1.32 6.66 -83.61 -0.56 0.76 16 23 C -0.13 -0.88 9.43 -39.40 -0.37 -1.25 16 24 C -0.10 -0.51 10.04 -39.61 -0.40 -0.91 16 25 C -0.12 -0.66 10.04 -39.55 -0.40 -1.06 16 26 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 27 C -0.11 -0.97 9.59 -39.40 -0.38 -1.35 16 28 N -0.25 -3.54 8.27 33.42 0.28 -3.26 16 29 C 0.09 1.78 6.51 -3.06 -0.02 1.76 16 30 H 0.03 0.71 7.38 -51.93 -0.38 0.32 16 31 H 0.00 -0.10 6.13 -51.93 -0.32 -0.41 16 32 H 0.05 1.49 7.02 -51.93 -0.36 1.13 16 33 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.08 1.39 6.14 -51.93 -0.32 1.07 16 36 H 0.08 1.21 6.20 -51.93 -0.32 0.89 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 39 H 0.18 1.00 6.96 -52.49 -0.37 0.64 16 40 H 0.13 0.60 6.65 -52.49 -0.35 0.26 16 41 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 42 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 43 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.14 1.35 7.65 -52.49 -0.40 0.95 16 45 H 0.07 1.73 7.07 -51.93 -0.37 1.36 16 46 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 375.80 15.07 5.66 5.66 Total: -1.00 -33.50 375.80 -9.63 -43.14 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.11 Total: 0.00 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -3.98 Total: 4.40 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.27 Total: -58.48 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.50 -9.63 -43.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971858145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.198 kcal (2) G-P(sol) polarization free energy of solvation -33.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds