Wall clock time and date at job start Sat Apr 11 2020 06:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36933 * 119.99981 * 2 1 4 4 H 1.08002 * 119.99612 * 154.74741 * 3 2 1 5 5 C 1.38815 * 120.00325 * 334.74386 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.29032 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.28747 * 5 3 2 8 8 H 1.48502 * 109.46887 * 85.00282 * 7 5 3 9 9 H 1.48494 * 109.47106 * 205.00158 * 7 5 3 10 10 H 1.48498 * 109.47139 * 325.00161 * 7 5 3 11 11 C 1.46499 * 119.99903 * 180.02562 * 2 1 3 12 12 H 1.08997 * 110.64349 * 181.68125 * 11 2 1 13 13 C 1.55151 * 110.71986 * 305.02634 * 11 2 1 14 14 C 1.54910 * 101.58227 * 153.86598 * 13 11 2 15 15 N 1.47424 * 104.83272 * 322.98547 * 14 13 11 16 16 C 1.34777 * 125.64675 * 204.09865 * 15 14 13 17 17 O 1.21583 * 119.99553 * 180.02562 * 16 15 14 18 18 C 1.47661 * 120.00489 * 0.03492 * 16 15 14 19 19 C 1.41530 * 126.44577 * 179.97438 * 18 16 15 20 20 C 1.35354 * 105.55866 * 180.02562 * 19 18 16 21 21 N 1.35860 * 107.12499 * 0.02562 * 20 19 18 22 22 C 1.40114 * 124.95984 * 179.97438 * 21 20 19 23 23 C 1.38858 * 120.06747 * 359.72306 * 22 21 20 24 24 C 1.38114 * 119.92927 * 179.72308 * 23 22 21 25 25 C 1.38287 * 120.06876 * 0.57485 * 24 23 22 26 26 C 1.38287 * 120.13370 * 359.69763 * 25 24 23 27 27 C 1.38107 * 120.07084 * 0.02562 * 26 25 24 28 28 N 1.28476 * 110.07738 * 359.72186 * 21 20 19 29 29 C 1.47023 * 108.70106 * 24.13058 * 15 14 13 30 30 H 1.09002 * 109.47421 * 84.50537 * 1 2 3 31 31 H 1.09002 * 109.47415 * 204.50557 * 1 2 3 32 32 H 1.09004 * 109.46808 * 324.50817 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.09003 * 111.00058 * 271.93615 * 13 11 2 35 35 H 1.09001 * 111.00953 * 35.78772 * 13 11 2 36 36 H 1.09002 * 110.36570 * 204.14938 * 14 13 11 37 37 H 1.09001 * 110.46582 * 81.87456 * 14 13 11 38 38 H 1.08004 * 127.21880 * 359.97438 * 19 18 16 39 39 H 1.08001 * 126.43675 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.03523 * 0.02562 * 23 22 21 41 41 H 1.08003 * 119.96824 * 180.29621 * 24 23 22 42 42 H 1.07995 * 119.92871 * 179.72534 * 25 24 23 43 43 H 1.07999 * 119.96114 * 180.02562 * 26 25 24 44 44 H 1.07999 * 120.03529 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.88274 * 239.52389 * 29 15 14 46 46 H 1.08994 * 109.87873 * 118.35802 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1523 1.2305 0.3990 5 6 1.5552 2.3306 -0.5129 6 7 0.3045 2.2960 -0.9214 7 14 2.5302 3.9201 -0.6232 8 1 3.3136 3.9337 -1.8847 9 1 1.5972 5.0752 -0.6074 10 1 3.4550 4.0149 0.5348 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0918 0.0294 13 6 1.7506 -2.1611 1.1874 14 6 2.0637 -3.5786 0.6466 15 7 1.7323 -3.5167 -0.7886 16 6 1.4054 -4.5685 -1.5653 17 8 1.1503 -4.3992 -2.7419 18 6 1.3569 -5.9264 -0.9873 19 6 1.0315 -7.1210 -1.6730 20 6 1.1156 -8.1052 -0.7477 21 7 1.4723 -7.5214 0.4261 22 6 1.6643 -8.2021 1.6356 23 6 1.4843 -9.5777 1.6959 24 6 1.6800 -10.2466 2.8883 25 6 2.0431 -9.5463 4.0241 26 6 2.2176 -8.1756 3.9685 27 6 2.0290 -7.5018 2.7778 28 7 1.6128 -6.2547 0.2638 29 6 1.8182 -2.1176 -1.2323 30 1 -0.3634 0.0984 -1.0229 31 1 -0.3634 -0.9351 0.4263 32 1 -0.3633 0.8368 0.5967 33 1 -0.1108 3.0959 -1.2802 34 1 2.3373 -1.9453 2.0804 35 1 0.6849 -2.0446 1.3844 36 1 1.4430 -4.3214 1.1476 37 1 3.1194 -3.8137 0.7823 38 1 0.7700 -7.2251 -2.7158 39 1 0.9327 -9.1570 -0.9115 40 1 1.1964 -10.1245 0.8102 41 1 1.5448 -11.3171 2.9348 42 1 2.1912 -10.0711 4.9563 43 1 2.5017 -7.6316 4.8571 44 1 2.1658 -6.4314 2.7349 45 1 0.8540 -1.7930 -1.6236 46 1 2.5847 -2.0190 -2.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971858145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:10 Heat of formation + Delta-G solvation = 104.700495 kcal Electronic energy + Delta-G solvation = -28826.689854 eV Core-core repulsion = 24912.036326 eV Total energy + Delta-G solvation = -3914.653528 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -43.98571 -41.00778 -39.94899 -38.89027 -36.59264 -34.71082 -33.50989 -32.54439 -31.56606 -31.25108 -30.49489 -29.27659 -28.09799 -26.26716 -24.66691 -24.23727 -23.79593 -22.45547 -21.83382 -20.90908 -20.43396 -19.33938 -18.98929 -18.15445 -17.60231 -17.23215 -17.12812 -16.70390 -16.43489 -15.91365 -15.63219 -15.37658 -15.05953 -14.96509 -14.70518 -14.48786 -14.41621 -14.14741 -14.04119 -13.75145 -13.71740 -13.34868 -13.18779 -12.74697 -12.61734 -12.55048 -12.41635 -12.27147 -12.16300 -12.10218 -11.90225 -11.75677 -11.42551 -11.35361 -11.22181 -10.62050 -10.35715 -10.00826 -9.77991 -9.26000 -8.80922 -7.85262 -5.35580 -0.30116 0.34786 0.64714 1.26046 1.27568 1.47275 1.49889 1.57446 1.90790 2.22833 2.49950 2.79375 3.10149 3.28525 3.55121 3.60814 3.73659 3.82727 3.95070 3.95991 4.10389 4.24087 4.26268 4.31873 4.41648 4.43199 4.45847 4.57358 4.61300 4.67408 4.71461 4.78359 4.88516 5.00347 5.04038 5.10777 5.17456 5.19640 5.29402 5.36396 5.39951 5.41895 5.53021 5.64096 5.72494 5.74579 6.03930 6.31925 6.39762 6.69065 7.00427 7.13676 7.81838 8.28500 9.18298 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019231 B = 0.002408 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.648781 B =11624.373114 C =12689.683085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.604 5.604 3 C -0.266 4.266 4 H 0.081 0.919 5 C -0.052 4.052 6 N -0.940 5.940 7 Si 0.974 3.026 8 H -0.286 1.286 9 H -0.296 1.296 10 H -0.265 1.265 11 C 0.170 3.830 12 H 0.087 0.913 13 C -0.140 4.140 14 C 0.116 3.884 15 N -0.600 5.600 16 C 0.603 3.397 17 O -0.578 6.578 18 C -0.026 4.026 19 C -0.187 4.187 20 C 0.002 3.998 21 N -0.233 5.233 22 C 0.102 3.898 23 C -0.125 4.125 24 C -0.096 4.096 25 C -0.116 4.116 26 C -0.104 4.104 27 C -0.128 4.128 28 N -0.264 5.264 29 C 0.098 3.902 30 H -0.008 1.008 31 H 0.020 0.980 32 H 0.030 0.970 33 H 0.248 0.752 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.174 0.826 39 H 0.233 0.767 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.127 0.873 45 H 0.041 0.959 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.016 -31.189 11.798 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.326 5.326 3 C -0.396 4.396 4 H 0.099 0.901 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.801 3.199 8 H -0.213 1.213 9 H -0.223 1.223 10 H -0.189 1.189 11 C 0.061 3.939 12 H 0.105 0.895 13 C -0.179 4.179 14 C -0.006 4.006 15 N -0.332 5.332 16 C 0.391 3.609 17 O -0.457 6.457 18 C -0.186 4.186 19 C -0.214 4.214 20 C -0.137 4.137 21 N -0.015 5.015 22 C 0.012 3.988 23 C -0.145 4.145 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.148 4.148 28 N -0.098 5.098 29 C -0.027 4.027 30 H 0.011 0.989 31 H 0.038 0.962 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.191 0.809 39 H 0.249 0.751 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.145 0.855 45 H 0.059 0.941 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.075 -30.545 12.161 33.129 hybrid contribution -0.193 1.347 -1.597 2.098 sum 3.882 -29.199 10.564 31.293 Atomic orbital electron populations 1.20512 0.82843 0.95588 0.97085 1.44074 1.01962 1.00989 1.85562 1.19619 0.99593 0.86934 1.33461 0.90150 1.26009 0.97437 1.02355 0.98904 1.70297 1.12561 1.28548 1.47224 0.85189 0.77747 0.78689 0.78233 1.21325 1.22252 1.18909 1.21533 0.96411 0.84614 0.91387 0.89464 1.23252 1.02282 0.93182 0.99213 1.22509 1.01629 0.97942 0.78526 1.48407 1.66070 1.06529 1.12213 1.16988 0.76712 0.82548 0.84602 1.90755 1.52504 1.85382 1.17104 1.21767 1.10365 0.94804 0.91618 1.22056 1.07430 0.89706 1.02234 1.23623 1.04449 1.02236 0.83408 1.43129 1.45945 1.03790 1.08679 1.18086 1.05612 0.92361 0.82696 1.21219 1.01754 0.90121 1.01419 1.21446 0.97217 1.01811 0.90950 1.21742 0.97570 0.93949 1.00137 1.21395 0.98355 0.95398 0.97112 1.21129 1.00622 1.01089 0.91978 1.73579 1.20144 0.97015 1.19110 1.22596 1.00260 0.80145 0.99722 0.98928 0.96186 0.95104 0.94270 0.88006 0.91673 0.88749 0.89955 0.80851 0.75101 0.82505 0.81676 0.82515 0.83194 0.85494 0.94097 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.64 7.69 127.77 0.98 10.63 16 2 N -0.60 -30.79 2.94 -696.13 -2.05 -32.83 16 3 C -0.27 -14.59 9.61 84.03 0.81 -13.79 16 4 H 0.08 4.16 7.82 -2.91 -0.02 4.14 16 5 C -0.05 -2.96 5.38 84.86 0.46 -2.50 16 6 N -0.94 -56.83 10.11 21.65 0.22 -56.61 16 7 Si 0.97 45.43 29.56 68.60 2.03 47.46 16 8 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 9 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 11 C 0.17 6.98 3.44 46.18 0.16 7.14 16 12 H 0.09 3.44 7.94 -2.39 -0.02 3.42 16 13 C -0.14 -4.60 6.59 31.98 0.21 -4.39 16 14 C 0.12 3.49 6.15 86.86 0.53 4.03 16 15 N -0.60 -22.48 3.33 -815.38 -2.71 -25.20 16 16 C 0.60 23.46 7.85 86.73 0.68 24.14 16 17 O -0.58 -26.37 17.25 -3.98 -0.07 -26.44 16 18 C -0.03 -0.82 6.96 42.44 0.30 -0.53 16 19 C -0.19 -4.56 10.80 22.42 0.24 -4.32 16 20 C 0.00 0.04 10.78 83.40 0.90 0.94 16 21 N -0.23 -4.94 3.52 -187.30 -0.66 -5.60 16 22 C 0.10 1.68 6.66 38.11 0.25 1.94 16 23 C -0.13 -1.18 9.43 22.39 0.21 -0.97 16 24 C -0.10 -0.57 10.04 22.25 0.22 -0.34 16 25 C -0.12 -0.77 10.04 22.29 0.22 -0.55 16 26 C -0.10 -1.10 10.04 22.25 0.22 -0.87 16 27 C -0.13 -2.09 9.59 22.39 0.21 -1.87 16 28 N -0.26 -7.20 8.27 -48.17 -0.40 -7.60 16 29 C 0.10 4.19 6.51 86.73 0.56 4.75 16 30 H -0.01 -0.45 7.38 -2.39 -0.02 -0.47 16 31 H 0.02 0.92 6.13 -2.39 -0.01 0.91 16 32 H 0.03 1.72 7.02 -2.39 -0.02 1.71 16 33 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 34 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.06 2.32 6.14 -2.39 -0.01 2.31 16 36 H 0.09 2.70 6.20 -2.39 -0.01 2.68 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.17 3.85 8.06 -2.91 -0.02 3.82 16 39 H 0.23 1.43 6.96 -2.91 -0.02 1.41 16 40 H 0.16 0.61 6.65 -2.91 -0.02 0.59 16 41 H 0.17 -0.05 8.06 -2.91 -0.02 -0.07 16 42 H 0.16 0.19 8.06 -2.91 -0.02 0.16 16 43 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.13 2.36 7.65 -2.91 -0.02 2.34 16 45 H 0.04 2.02 7.07 -2.39 -0.02 2.00 16 46 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -77.52 375.80 4.55 -72.98 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.00 Total: 10.41 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 7.18 Total: 23.43 kcal Atomic # 7 Polarization: -122.24 SS G_CDS: -5.60 Total: -127.84 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.07 Total: -26.44 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -77.52 4.55 -72.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971858145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.677 kcal (2) G-P(sol) polarization free energy of solvation -77.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds