Wall clock time and date at job start Sat Apr 11 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 119.99710 * 2 1 4 4 H 1.08001 * 119.99944 * 204.10760 * 3 2 1 5 5 C 1.38806 * 120.00139 * 24.10594 * 3 2 1 6 6 N 1.31614 * 120.00241 * 9.76027 * 5 3 2 7 7 Si 1.86803 * 119.99952 * 189.76132 * 5 3 2 8 8 H 1.48500 * 109.47255 * 59.99965 * 7 5 3 9 9 H 1.48500 * 109.47394 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47201 * 300.00268 * 7 5 3 11 11 C 1.46500 * 119.99851 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88135 * 182.42741 * 11 2 1 13 13 C 1.55156 * 111.04164 * 306.33384 * 11 2 1 14 14 C 1.54327 * 103.02008 * 153.39775 * 13 11 2 15 15 N 1.47024 * 107.26778 * 338.13680 * 14 13 11 16 16 C 1.34772 * 125.64918 * 178.84833 * 15 14 13 17 17 O 1.21576 * 120.00451 * 185.64518 * 16 15 14 18 18 C 1.47657 * 119.99962 * 5.65060 * 16 15 14 19 19 C 1.39710 * 120.08164 * 353.01206 * 18 16 15 20 20 C 1.37715 * 119.92311 * 179.97438 * 19 18 16 21 21 C 1.39045 * 120.07918 * 0.02562 * 20 19 18 22 22 N 1.39859 * 119.92052 * 179.97438 * 21 20 19 23 23 C 1.37163 * 126.48684 * 179.71142 * 22 21 20 24 24 C 1.34623 * 106.83287 * 179.84000 * 23 22 21 25 25 N 1.34153 * 108.21345 * 0.42441 * 24 23 22 26 26 C 1.30485 * 109.36576 * 359.72852 * 25 24 23 27 27 C 1.39044 * 120.15842 * 359.97438 * 21 20 19 28 28 C 1.37713 * 120.08087 * 359.97438 * 27 21 20 29 29 C 1.47420 * 108.70192 * 358.59249 * 15 14 13 30 30 H 1.08998 * 109.46781 * 275.42407 * 1 2 3 31 31 H 1.08993 * 109.47080 * 35.42841 * 1 2 3 32 32 H 1.09000 * 109.47111 * 155.42864 * 1 2 3 33 33 H 0.97009 * 119.99945 * 180.02562 * 6 5 3 34 34 H 1.09005 * 110.71395 * 271.95608 * 13 11 2 35 35 H 1.08999 * 110.71581 * 35.22466 * 13 11 2 36 36 H 1.09001 * 109.98671 * 218.66429 * 14 13 11 37 37 H 1.08996 * 109.78384 * 97.49804 * 14 13 11 38 38 H 1.08000 * 120.03606 * 359.95437 * 19 18 16 39 39 H 1.08004 * 119.96248 * 180.27795 * 20 19 18 40 40 H 1.08001 * 126.58243 * 359.97438 * 23 22 21 41 41 H 1.07999 * 125.89313 * 180.15263 * 24 23 22 42 42 H 1.08005 * 125.71951 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.95947 * 179.97438 * 27 21 20 44 44 H 1.08008 * 120.04153 * 180.02562 * 28 27 21 45 45 H 1.08997 * 110.37027 * 143.19348 * 29 15 14 46 46 H 1.09006 * 110.36618 * 265.40747 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1590 1.2268 -0.3820 5 6 1.5464 2.3356 0.4910 6 7 0.3983 2.2551 1.1295 7 14 2.3640 3.9972 0.2454 8 1 2.5159 4.2642 -1.2075 9 1 1.5239 5.0576 0.8578 10 1 3.7018 3.9907 0.8899 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0965 0.0436 13 6 1.7330 -2.1797 1.1675 14 6 2.0342 -3.5990 0.6418 15 7 2.1001 -3.5164 -0.8246 16 6 2.3654 -4.5418 -1.6580 17 8 2.4960 -4.3386 -2.8495 18 6 2.4973 -5.9121 -1.1239 19 6 2.4932 -6.1291 0.2562 20 6 2.6159 -7.4086 0.7507 21 6 2.7443 -8.4836 -0.1217 22 7 2.8692 -9.7815 0.3841 23 6 2.9974 -10.9337 -0.3489 24 6 3.0915 -11.9476 0.5318 25 7 3.0140 -11.4363 1.7697 26 6 2.8808 -10.1404 1.6950 27 6 2.7488 -8.2714 -1.4959 28 6 2.6255 -6.9948 -1.9976 29 6 1.8217 -2.1274 -1.2328 30 1 -0.3633 0.0971 1.0231 31 1 -0.3633 0.8373 -0.5957 32 1 -0.3633 -0.9346 -0.4273 33 1 -0.0234 3.0586 1.4723 34 1 2.3058 -1.9709 2.0711 35 1 0.6652 -2.0583 1.3499 36 1 1.2393 -4.2830 0.9392 37 1 2.9897 -3.9437 1.0370 38 1 2.3942 -5.2945 0.9344 39 1 2.6082 -7.5776 1.8174 40 1 3.0208 -11.0123 -1.4258 41 1 3.2050 -12.9927 0.2844 42 1 2.7938 -9.4660 2.5342 43 1 2.8492 -9.1087 -2.1706 44 1 2.6287 -6.8307 -3.0651 45 1 2.4384 -1.8526 -2.0885 46 1 0.7653 -2.0071 -1.4731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972027150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:37 Heat of formation + Delta-G solvation = 121.301597 kcal Electronic energy + Delta-G solvation = -28430.429377 eV Core-core repulsion = 24516.495727 eV Total energy + Delta-G solvation = -3913.933650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.73798 -40.60807 -38.85637 -37.49679 -35.09839 -34.44223 -32.11986 -31.57577 -30.35783 -29.99284 -29.58186 -27.92157 -26.12870 -25.06890 -23.78423 -23.34127 -22.51551 -21.30276 -20.96905 -20.03880 -19.43815 -18.85382 -17.46598 -17.14461 -16.23222 -15.95460 -15.83100 -15.39042 -15.18453 -14.81808 -14.55825 -14.30988 -14.16795 -14.13353 -13.72355 -13.57956 -13.49604 -13.20128 -13.12638 -12.61955 -12.51078 -12.37418 -12.06738 -11.78655 -11.09278 -11.03250 -10.93456 -10.73034 -10.56450 -10.53698 -10.52325 -10.35090 -9.98848 -9.96403 -9.87044 -9.56389 -9.16383 -8.75379 -8.65776 -8.47356 -6.87448 -5.82437 -3.32171 0.12576 0.83676 1.69658 2.20034 2.66350 2.77303 2.98699 3.33635 3.39328 3.40381 3.51728 4.09699 4.16601 4.26487 4.32189 4.40096 4.45204 4.68861 4.75586 4.86195 4.95049 5.08505 5.09814 5.18737 5.22537 5.32298 5.42578 5.44548 5.48676 5.58752 5.70925 5.79764 5.88151 5.90585 5.96606 6.13906 6.18943 6.24788 6.29123 6.40986 6.53498 6.69322 6.77070 6.78511 7.28773 7.54804 7.57573 7.64372 7.71964 8.14725 8.29350 9.12501 9.73657 10.22111 11.21648 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.002015 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.807318 B =13889.080868 C =14461.444407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.585 5.585 3 C -0.262 4.262 4 H 0.069 0.931 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.174 3.826 12 H 0.080 0.920 13 C -0.154 4.154 14 C 0.089 3.911 15 N -0.604 5.604 16 C 0.568 3.432 17 O -0.541 6.541 18 C -0.130 4.130 19 C -0.096 4.096 20 C -0.141 4.141 21 C 0.151 3.849 22 N -0.412 5.412 23 C -0.053 4.053 24 C -0.023 4.023 25 N -0.485 5.485 26 C 0.191 3.809 27 C -0.143 4.143 28 C -0.034 4.034 29 C 0.084 3.916 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.000 1.000 33 H 0.254 0.746 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.176 0.824 39 H 0.138 0.862 40 H 0.179 0.821 41 H 0.175 0.825 42 H 0.211 0.789 43 H 0.136 0.864 44 H 0.146 0.854 45 H 0.076 0.924 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.381 -23.230 -0.315 23.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.087 0.913 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.063 3.937 12 H 0.098 0.902 13 C -0.194 4.194 14 C -0.034 4.034 15 N -0.337 5.337 16 C 0.357 3.643 17 O -0.420 6.420 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.161 4.161 21 C 0.057 3.943 22 N -0.091 5.091 23 C -0.183 4.183 24 C -0.168 4.168 25 N -0.202 5.202 26 C -0.090 4.090 27 C -0.162 4.162 28 C -0.054 4.054 29 C -0.041 4.041 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.019 0.981 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.192 0.808 39 H 0.155 0.845 40 H 0.196 0.804 41 H 0.192 0.808 42 H 0.227 0.773 43 H 0.154 0.846 44 H 0.164 0.836 45 H 0.094 0.906 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.360 -23.391 -0.223 23.632 hybrid contribution 0.262 1.225 -0.768 1.470 sum 3.622 -22.166 -0.991 22.481 Atomic orbital electron populations 1.20842 0.82360 0.95539 0.99752 1.43793 1.01887 0.99780 1.85011 1.19170 0.99084 0.85546 1.35364 0.91285 1.25075 0.97585 0.98741 0.97848 1.70039 1.17943 1.27711 1.39324 0.86286 0.78598 0.83414 0.77916 1.20949 1.21572 1.20833 1.21407 0.96532 0.85884 0.89881 0.90226 1.23315 1.03193 0.92193 1.00740 1.22562 1.00453 0.99796 0.80570 1.48333 1.68410 1.09896 1.07053 1.17774 0.77386 0.83606 0.85544 1.90783 1.51396 1.84588 1.15220 1.20082 1.05432 0.93909 0.93928 1.22832 0.94453 0.98324 0.95791 1.20832 1.04331 0.91264 0.99664 1.18073 1.00243 0.82396 0.93566 1.43258 1.52612 1.05192 1.08036 1.22834 1.11252 0.84908 0.99289 1.22396 1.06762 0.99643 0.88037 1.70347 1.18501 1.06541 1.24828 1.25367 1.04725 0.93264 0.85603 1.20791 1.04677 0.98203 0.92569 1.21155 0.93156 0.90150 1.00911 1.23105 1.01441 0.78745 1.00760 0.94698 0.93795 0.98139 0.93544 0.90151 0.90253 0.90936 0.90732 0.80779 0.84466 0.80393 0.80765 0.77284 0.84615 0.83618 0.90599 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.59 59.85 0.45 4.10 16 2 N -0.58 -13.56 2.96 -171.03 -0.51 -14.06 16 3 C -0.26 -6.82 9.61 -15.06 -0.14 -6.96 16 4 H 0.07 1.76 7.85 -52.49 -0.41 1.34 16 5 C 0.01 0.17 5.17 -17.43 -0.09 0.08 16 6 N -0.91 -25.15 10.60 55.49 0.59 -24.56 16 7 Si 0.91 21.08 29.56 -169.99 -5.03 16.06 16 8 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 C 0.17 3.21 3.54 -65.78 -0.23 2.98 16 12 H 0.08 1.49 7.96 -51.93 -0.41 1.08 16 13 C -0.15 -2.28 6.51 -24.89 -0.16 -2.45 16 14 C 0.09 1.03 4.86 -3.06 -0.01 1.01 16 15 N -0.60 -8.84 3.33 -176.50 -0.59 -9.43 16 16 C 0.57 8.54 7.80 -12.42 -0.10 8.44 16 17 O -0.54 -9.97 16.59 5.30 0.09 -9.88 16 18 C -0.13 -1.50 5.87 -104.95 -0.62 -2.11 16 19 C -0.10 -0.87 8.60 -39.22 -0.34 -1.20 16 20 C -0.14 -1.09 9.45 -39.47 -0.37 -1.47 16 21 C 0.15 1.28 6.64 -83.60 -0.55 0.73 16 22 N -0.41 -3.51 2.98 -62.06 -0.19 -3.70 16 23 C -0.05 -0.41 10.85 -16.45 -0.18 -0.59 16 24 C -0.02 -0.20 11.85 -17.82 -0.21 -0.41 16 25 N -0.49 -5.11 11.24 -14.46 -0.16 -5.27 16 26 C 0.19 1.65 11.91 -89.59 -1.07 0.58 16 27 C -0.14 -1.19 9.45 -39.47 -0.37 -1.56 16 28 C -0.03 -0.35 9.58 -39.22 -0.38 -0.72 16 29 C 0.08 1.45 6.49 -2.53 -0.02 1.43 16 30 H 0.03 0.86 7.31 -51.93 -0.38 0.48 16 31 H 0.04 1.10 7.35 -51.93 -0.38 0.72 16 32 H 0.00 0.00 6.34 -51.93 -0.33 -0.33 16 33 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.26 7.08 -51.93 -0.37 0.89 16 36 H 0.07 0.69 6.73 -51.93 -0.35 0.34 16 37 H 0.07 0.70 6.74 -51.93 -0.35 0.35 16 38 H 0.18 1.37 2.73 -58.70 -0.16 1.21 16 39 H 0.14 0.70 6.75 -52.48 -0.35 0.35 16 40 H 0.18 0.84 7.13 -52.49 -0.37 0.47 16 41 H 0.18 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.21 1.09 7.05 -52.48 -0.37 0.72 16 43 H 0.14 0.82 6.79 -52.49 -0.36 0.46 16 44 H 0.15 1.45 7.66 -52.48 -0.40 1.05 16 45 H 0.08 1.41 7.98 -51.93 -0.41 1.00 16 46 H 0.07 1.30 6.34 -51.93 -0.33 0.97 16 LS Contribution 368.64 15.07 5.56 5.56 Total: -1.00 -32.65 368.64 -10.35 -43.00 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.72 Total: 0.40 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -4.39 Total: 1.89 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.85 Total: -57.02 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.65 -10.35 -43.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972027150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.298 kcal (2) G-P(sol) polarization free energy of solvation -32.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds