Wall clock time and date at job start Sat Apr 11 2020 06:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36935 * 119.99710 * 2 1 4 4 H 1.08001 * 119.99944 * 204.10760 * 3 2 1 5 5 C 1.38806 * 120.00139 * 24.10594 * 3 2 1 6 6 N 1.31614 * 120.00241 * 9.76027 * 5 3 2 7 7 Si 1.86803 * 119.99952 * 189.76132 * 5 3 2 8 8 H 1.48500 * 109.47255 * 59.99965 * 7 5 3 9 9 H 1.48500 * 109.47394 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47201 * 300.00268 * 7 5 3 11 11 C 1.46500 * 119.99851 * 179.97438 * 2 1 3 12 12 H 1.09003 * 110.88135 * 182.42741 * 11 2 1 13 13 C 1.55156 * 111.04164 * 306.33384 * 11 2 1 14 14 C 1.54327 * 103.02008 * 153.39775 * 13 11 2 15 15 N 1.47024 * 107.26778 * 338.13680 * 14 13 11 16 16 C 1.34772 * 125.64918 * 178.84833 * 15 14 13 17 17 O 1.21576 * 120.00451 * 185.64518 * 16 15 14 18 18 C 1.47657 * 119.99962 * 5.65060 * 16 15 14 19 19 C 1.39710 * 120.08164 * 353.01206 * 18 16 15 20 20 C 1.37715 * 119.92311 * 179.97438 * 19 18 16 21 21 C 1.39045 * 120.07918 * 0.02562 * 20 19 18 22 22 N 1.39859 * 119.92052 * 179.97438 * 21 20 19 23 23 C 1.37163 * 126.48684 * 179.71142 * 22 21 20 24 24 C 1.34623 * 106.83287 * 179.84000 * 23 22 21 25 25 N 1.34153 * 108.21345 * 0.42441 * 24 23 22 26 26 C 1.30485 * 109.36576 * 359.72852 * 25 24 23 27 27 C 1.39044 * 120.15842 * 359.97438 * 21 20 19 28 28 C 1.37713 * 120.08087 * 359.97438 * 27 21 20 29 29 C 1.47420 * 108.70192 * 358.59249 * 15 14 13 30 30 H 1.08998 * 109.46781 * 275.42407 * 1 2 3 31 31 H 1.08993 * 109.47080 * 35.42841 * 1 2 3 32 32 H 1.09000 * 109.47111 * 155.42864 * 1 2 3 33 33 H 0.97009 * 119.99945 * 180.02562 * 6 5 3 34 34 H 1.09005 * 110.71395 * 271.95608 * 13 11 2 35 35 H 1.08999 * 110.71581 * 35.22466 * 13 11 2 36 36 H 1.09001 * 109.98671 * 218.66429 * 14 13 11 37 37 H 1.08996 * 109.78384 * 97.49804 * 14 13 11 38 38 H 1.08000 * 120.03606 * 359.95437 * 19 18 16 39 39 H 1.08004 * 119.96248 * 180.27795 * 20 19 18 40 40 H 1.08001 * 126.58243 * 359.97438 * 23 22 21 41 41 H 1.07999 * 125.89313 * 180.15263 * 24 23 22 42 42 H 1.08005 * 125.71951 * 179.97438 * 26 25 24 43 43 H 1.08002 * 119.95947 * 179.97438 * 27 21 20 44 44 H 1.08008 * 120.04153 * 180.02562 * 28 27 21 45 45 H 1.08997 * 110.37027 * 143.19348 * 29 15 14 46 46 H 1.09006 * 110.36618 * 265.40747 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1590 1.2268 -0.3820 5 6 1.5464 2.3356 0.4910 6 7 0.3983 2.2551 1.1295 7 14 2.3640 3.9972 0.2454 8 1 2.5159 4.2642 -1.2075 9 1 1.5239 5.0576 0.8578 10 1 3.7018 3.9907 0.8899 11 6 2.1975 -1.2687 0.0006 12 1 3.2730 -1.0965 0.0436 13 6 1.7330 -2.1797 1.1675 14 6 2.0342 -3.5990 0.6418 15 7 2.1001 -3.5164 -0.8246 16 6 2.3654 -4.5418 -1.6580 17 8 2.4960 -4.3386 -2.8495 18 6 2.4973 -5.9121 -1.1239 19 6 2.4932 -6.1291 0.2562 20 6 2.6159 -7.4086 0.7507 21 6 2.7443 -8.4836 -0.1217 22 7 2.8692 -9.7815 0.3841 23 6 2.9974 -10.9337 -0.3489 24 6 3.0915 -11.9476 0.5318 25 7 3.0140 -11.4363 1.7697 26 6 2.8808 -10.1404 1.6950 27 6 2.7488 -8.2714 -1.4959 28 6 2.6255 -6.9948 -1.9976 29 6 1.8217 -2.1274 -1.2328 30 1 -0.3633 0.0971 1.0231 31 1 -0.3633 0.8373 -0.5957 32 1 -0.3633 -0.9346 -0.4273 33 1 -0.0234 3.0586 1.4723 34 1 2.3058 -1.9709 2.0711 35 1 0.6652 -2.0583 1.3499 36 1 1.2393 -4.2830 0.9392 37 1 2.9897 -3.9437 1.0370 38 1 2.3942 -5.2945 0.9344 39 1 2.6082 -7.5776 1.8174 40 1 3.0208 -11.0123 -1.4258 41 1 3.2050 -12.9927 0.2844 42 1 2.7938 -9.4660 2.5342 43 1 2.8492 -9.1087 -2.1706 44 1 2.6287 -6.8307 -3.0651 45 1 2.4384 -1.8526 -2.0885 46 1 0.7653 -2.0071 -1.4731 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972027150.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:35 Heat of formation + Delta-G solvation = 103.614529 kcal Electronic energy + Delta-G solvation = -28431.196346 eV Core-core repulsion = 24516.495727 eV Total energy + Delta-G solvation = -3914.700619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.33332 -41.63403 -39.77184 -38.79318 -36.69396 -35.21969 -33.57239 -32.46984 -31.53937 -31.02930 -30.24080 -29.20042 -28.05348 -26.11720 -24.80188 -24.39947 -23.67124 -22.00887 -21.65131 -21.02884 -20.90916 -19.49655 -18.95435 -18.46021 -17.59651 -17.04997 -16.56775 -16.42288 -16.07493 -15.95649 -15.80605 -15.25388 -15.01079 -14.96653 -14.83009 -14.67917 -14.44572 -14.38891 -14.17417 -14.04410 -13.77304 -13.47410 -13.44170 -12.92521 -12.76465 -12.56460 -12.40669 -12.15938 -12.11635 -11.96921 -11.75305 -11.62613 -11.40015 -11.17386 -11.07892 -10.64241 -10.21845 -9.83703 -9.71073 -9.34109 -8.77407 -7.83162 -5.33943 -0.59909 0.19700 1.02589 1.47886 1.50107 1.55963 1.60432 1.80513 1.85699 2.10582 2.51056 2.71933 3.27289 3.38798 3.44109 3.55985 3.64832 3.74189 3.88334 3.89682 3.99603 4.09624 4.14025 4.16803 4.28105 4.35928 4.48561 4.54552 4.57801 4.62312 4.74125 4.83397 4.85412 4.88901 4.97852 4.99641 5.09887 5.22965 5.26590 5.32242 5.34999 5.42820 5.51228 5.64704 5.71949 5.74435 6.20378 6.32383 6.45026 6.96086 7.00103 7.14687 7.84313 8.27899 9.18861 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.002015 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.807318 B =13889.080868 C =14461.444407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.601 5.601 3 C -0.268 4.268 4 H 0.069 0.931 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.283 1.283 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.166 3.834 12 H 0.075 0.925 13 C -0.143 4.143 14 C 0.093 3.907 15 N -0.606 5.606 16 C 0.565 3.435 17 O -0.587 6.587 18 C -0.150 4.150 19 C -0.088 4.088 20 C -0.134 4.134 21 C 0.152 3.848 22 N -0.417 5.417 23 C -0.055 4.055 24 C -0.041 4.041 25 N -0.522 5.522 26 C 0.187 3.813 27 C -0.138 4.138 28 C -0.042 4.042 29 C 0.095 3.905 30 H 0.015 0.985 31 H 0.011 0.989 32 H 0.028 0.972 33 H 0.249 0.751 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.189 0.811 39 H 0.170 0.830 40 H 0.205 0.795 41 H 0.191 0.809 42 H 0.239 0.761 43 H 0.158 0.842 44 H 0.138 0.862 45 H 0.054 0.946 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.223 -25.548 0.932 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.323 5.323 3 C -0.398 4.398 4 H 0.087 0.913 5 C -0.242 4.242 6 N -0.579 5.579 7 Si 0.796 3.204 8 H -0.209 1.209 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.057 3.943 12 H 0.093 0.907 13 C -0.183 4.183 14 C -0.028 4.028 15 N -0.337 5.337 16 C 0.356 3.644 17 O -0.469 6.469 18 C -0.154 4.154 19 C -0.106 4.106 20 C -0.153 4.153 21 C 0.058 3.942 22 N -0.096 5.096 23 C -0.184 4.184 24 C -0.186 4.186 25 N -0.240 5.240 26 C -0.094 4.094 27 C -0.158 4.158 28 C -0.062 4.062 29 C -0.030 4.030 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.126 0.874 38 H 0.205 0.795 39 H 0.187 0.813 40 H 0.221 0.779 41 H 0.208 0.792 42 H 0.255 0.745 43 H 0.175 0.825 44 H 0.156 0.844 45 H 0.072 0.928 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.227 -25.769 1.041 26.134 hybrid contribution 0.039 1.788 -1.191 2.149 sum 4.266 -23.981 -0.150 24.358 Atomic orbital electron populations 1.20526 0.82602 0.95509 0.98039 1.43935 1.02030 1.00816 1.85487 1.19471 0.99113 0.86922 1.34288 0.91280 1.25764 0.98366 1.01739 0.98364 1.70189 1.19175 1.27913 1.40671 0.85350 0.77874 0.79652 0.77573 1.20928 1.22035 1.19938 1.21537 0.95891 0.84846 0.92056 0.90705 1.23145 1.02553 0.93159 0.99466 1.22804 1.03440 0.98207 0.78332 1.48349 1.68325 1.08573 1.08495 1.18380 0.76197 0.84824 0.84980 1.90751 1.53517 1.85408 1.17259 1.19869 1.08324 0.91784 0.95395 1.22866 0.93834 0.99358 0.94493 1.21151 1.02701 0.90247 1.01247 1.18242 0.99480 0.82719 0.93757 1.43353 1.52762 1.05260 1.08234 1.23304 1.10177 0.84420 1.00483 1.22798 1.07090 1.00869 0.87828 1.70334 1.19834 1.07790 1.26004 1.25983 1.03738 0.93267 0.86365 1.20947 1.03731 0.97969 0.93146 1.21150 0.93719 0.90713 1.00595 1.22698 1.00166 0.80649 0.99464 0.96692 0.97014 0.95381 0.94180 0.89083 0.91260 0.87720 0.87429 0.79481 0.81262 0.77860 0.79221 0.74474 0.82487 0.84417 0.92752 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.33 7.59 127.77 0.97 9.30 16 2 N -0.60 -28.29 2.96 -695.02 -2.06 -30.34 16 3 C -0.27 -14.12 9.61 84.03 0.81 -13.31 16 4 H 0.07 3.55 7.85 -2.91 -0.02 3.53 16 5 C -0.05 -2.53 5.17 84.86 0.44 -2.09 16 6 N -0.93 -53.03 10.60 21.65 0.23 -52.80 16 7 Si 0.97 43.91 29.56 68.60 2.03 45.93 16 8 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 9 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 C 0.17 6.07 3.54 46.38 0.16 6.24 16 12 H 0.07 2.79 7.96 -2.39 -0.02 2.78 16 13 C -0.14 -3.96 6.51 31.78 0.21 -3.75 16 14 C 0.09 1.84 4.86 86.73 0.42 2.27 16 15 N -0.61 -16.94 3.33 -830.61 -2.76 -19.71 16 16 C 0.56 16.60 7.80 86.73 0.68 17.28 16 17 O -0.59 -22.14 16.59 -3.96 -0.07 -22.21 16 18 C -0.15 -3.16 5.87 -20.08 -0.12 -3.27 16 19 C -0.09 -1.24 8.60 22.50 0.19 -1.05 16 20 C -0.13 -1.48 9.45 22.34 0.21 -1.27 16 21 C 0.15 2.03 6.64 38.25 0.25 2.28 16 22 N -0.42 -5.70 2.98 -350.25 -1.04 -6.74 16 23 C -0.05 -0.68 10.85 83.03 0.90 0.22 16 24 C -0.04 -0.63 11.85 83.51 0.99 0.36 16 25 N -0.52 -9.90 11.24 -199.67 -2.25 -12.14 16 26 C 0.19 2.63 11.91 179.99 2.14 4.78 16 27 C -0.14 -1.91 9.45 22.34 0.21 -1.70 16 28 C -0.04 -0.79 9.58 22.50 0.22 -0.57 16 29 C 0.10 3.32 6.49 86.86 0.56 3.89 16 30 H 0.01 0.75 7.31 -2.39 -0.02 0.73 16 31 H 0.01 0.59 7.35 -2.39 -0.02 0.57 16 32 H 0.03 1.13 6.34 -2.39 -0.02 1.11 16 33 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 34 H 0.09 2.34 8.14 -2.38 -0.02 2.33 16 35 H 0.07 2.08 7.08 -2.39 -0.02 2.07 16 36 H 0.11 1.51 6.73 -2.39 -0.02 1.49 16 37 H 0.11 1.51 6.74 -2.39 -0.02 1.49 16 38 H 0.19 2.02 2.73 -8.75 -0.02 1.99 16 39 H 0.17 0.76 6.75 -2.91 -0.02 0.74 16 40 H 0.20 1.24 7.13 -2.91 -0.02 1.22 16 41 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.24 1.49 7.05 -2.91 -0.02 1.47 16 43 H 0.16 1.39 6.79 -2.91 -0.02 1.37 16 44 H 0.14 2.73 7.66 -2.91 -0.02 2.71 16 45 H 0.05 2.10 7.98 -2.39 -0.02 2.08 16 46 H 0.06 2.20 6.34 -2.38 -0.02 2.19 16 Total: -1.00 -73.87 368.64 4.34 -69.53 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.01 Total: 8.88 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 9.25 Total: 19.60 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -7.88 Total: -121.73 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.07 Total: -22.21 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -73.87 4.34 -69.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972027150.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.144 kcal (2) G-P(sol) polarization free energy of solvation -73.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds