Wall clock time and date at job start Sat Apr 11 2020 06:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99999 * 2 1 4 4 H 1.08004 * 119.99729 * 203.30081 * 3 2 1 5 5 C 1.38804 * 120.00484 * 23.29993 * 3 2 1 6 6 N 1.31624 * 120.00097 * 14.01025 * 5 3 2 7 7 Si 1.86803 * 120.00377 * 194.01259 * 5 3 2 8 8 H 1.48496 * 109.47023 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46934 * 119.99744 * 7 5 3 10 10 H 1.48497 * 109.47261 * 239.99647 * 7 5 3 11 11 C 1.46505 * 119.99985 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88507 * 182.43415 * 11 2 1 13 13 C 1.55156 * 111.00642 * 306.35535 * 11 2 1 14 14 C 1.54335 * 103.02191 * 153.37817 * 13 11 2 15 15 N 1.47024 * 107.26513 * 338.14405 * 14 13 11 16 16 C 1.34773 * 125.64924 * 178.84754 * 15 14 13 17 17 O 1.21623 * 120.00101 * 179.68856 * 16 15 14 18 18 C 1.47287 * 120.00073 * 359.69146 * 16 15 14 19 19 C 1.37967 * 126.80575 * 359.95988 * 18 16 15 20 20 N 1.34161 * 107.88613 * 180.02562 * 19 18 16 21 21 H 0.96994 * 125.15970 * 179.97438 * 20 19 18 22 22 N 1.39776 * 109.67118 * 359.76703 * 20 19 18 23 23 C 1.31364 * 109.07877 * 0.39850 * 22 20 19 24 24 C 1.48295 * 126.50638 * 179.88699 * 23 22 20 25 25 C 1.39381 * 120.12576 * 324.67889 * 24 23 22 26 26 C 1.38006 * 119.87416 * 179.97438 * 25 24 23 27 27 C 1.38333 * 120.12632 * 359.97438 * 26 25 24 28 28 C 1.38334 * 120.24992 * 0.02562 * 27 26 25 29 29 C 1.38008 * 120.12626 * 0.02562 * 28 27 26 30 30 C 1.47430 * 108.70351 * 358.58087 * 15 14 13 31 31 H 1.08994 * 109.47682 * 275.17800 * 1 2 3 32 32 H 1.09006 * 109.46650 * 35.17777 * 1 2 3 33 33 H 1.09001 * 109.46835 * 155.17173 * 1 2 3 34 34 H 0.96993 * 120.00374 * 180.02562 * 6 5 3 35 35 H 1.09002 * 110.72151 * 271.94197 * 13 11 2 36 36 H 1.09003 * 110.71700 * 35.03116 * 13 11 2 37 37 H 1.08998 * 109.99007 * 218.66942 * 14 13 11 38 38 H 1.08996 * 109.77632 * 97.49285 * 14 13 11 39 39 H 1.07999 * 126.05301 * 0.02562 * 19 18 16 40 40 H 1.08004 * 120.06033 * 359.96581 * 25 24 23 41 41 H 1.07996 * 119.93774 * 180.02562 * 26 25 24 42 42 H 1.07996 * 119.87817 * 179.74475 * 27 26 25 43 43 H 1.08001 * 119.93550 * 179.97438 * 28 27 26 44 44 H 1.07997 * 120.06167 * 180.02562 * 29 28 27 45 45 H 1.09003 * 110.36814 * 143.19271 * 30 15 14 46 46 H 1.08999 * 110.37156 * 265.40982 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1637 1.2240 -0.3700 5 6 1.5407 2.3390 0.4755 6 7 0.4276 2.2557 1.1731 7 14 2.3005 4.0092 0.1252 8 1 3.5397 3.8315 -0.6735 9 1 1.3359 4.8417 -0.6374 10 1 2.6296 4.6821 1.4074 11 6 2.1975 -1.2688 0.0006 12 1 3.2729 -1.0965 0.0437 13 6 1.7320 -2.1792 1.1675 14 6 2.0326 -3.5989 0.6421 15 7 2.0992 -3.5165 -0.8243 16 6 2.3643 -4.5421 -1.6575 17 8 2.3885 -4.3586 -2.8595 18 6 2.6246 -5.8854 -1.1123 19 6 2.6334 -6.2500 0.2183 20 7 2.9124 -7.5606 0.2845 21 1 2.9809 -8.0764 1.1031 22 7 3.0846 -8.0708 -1.0053 23 6 2.9264 -7.0998 -1.8758 24 6 3.0275 -7.2124 -3.3511 25 6 3.9534 -8.0822 -3.9245 26 6 4.0427 -8.1832 -5.2979 27 6 3.2152 -7.4236 -6.1052 28 6 2.2944 -6.5587 -5.5416 29 6 2.1970 -6.4487 -4.1694 30 6 1.8217 -2.1274 -1.2328 31 1 -0.3634 0.0927 1.0234 32 1 -0.3633 0.8401 -0.5921 33 1 -0.3633 -0.9327 -0.4315 34 1 0.0018 3.0615 1.5050 35 1 2.3045 -1.9707 2.0713 36 1 0.6649 -2.0550 1.3514 37 1 1.2372 -4.2824 0.9392 38 1 2.9878 -3.9440 1.0376 39 1 2.4484 -5.5962 1.0577 40 1 4.5998 -8.6759 -3.2951 41 1 4.7595 -8.8572 -5.7433 42 1 3.2913 -7.5028 -7.1796 43 1 1.6511 -5.9677 -6.1768 44 1 1.4775 -5.7734 -3.7305 45 1 2.4389 -1.8530 -2.0883 46 1 0.7655 -2.0065 -1.4737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972034210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:44 Heat of formation + Delta-G solvation = 110.200494 kcal Electronic energy + Delta-G solvation = -29053.693908 eV Core-core repulsion = 25139.278877 eV Total energy + Delta-G solvation = -3914.415030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.39893 -39.40121 -38.86560 -37.29440 -34.88877 -32.95434 -31.91458 -30.97705 -30.47220 -29.97105 -29.61921 -27.70187 -26.08412 -24.40885 -23.60030 -22.87580 -22.48200 -21.47727 -20.39127 -19.64649 -19.35257 -17.56573 -17.06710 -16.81446 -16.54684 -15.94824 -15.46608 -15.26682 -14.89840 -14.73648 -14.47109 -14.13242 -13.83783 -13.49202 -13.44053 -13.23749 -13.01950 -12.75226 -12.59759 -12.45899 -12.37151 -11.95025 -11.53732 -11.28380 -11.16665 -10.98980 -10.89928 -10.79151 -10.53188 -10.52199 -10.28091 -10.20048 -9.92742 -9.90711 -9.64119 -9.05171 -8.82127 -8.62961 -8.45922 -8.29986 -6.84033 -5.80073 -3.27615 0.94626 1.36139 1.49764 2.22416 2.44203 3.21279 3.34677 3.42970 3.45057 3.48183 3.88028 4.16174 4.38981 4.44416 4.84851 4.86799 4.93688 4.99490 5.02681 5.18503 5.20617 5.23130 5.29350 5.40703 5.48851 5.57706 5.65342 5.71842 5.85045 5.86162 5.96228 6.06522 6.12244 6.27662 6.32873 6.46823 6.50187 6.56878 6.60797 6.63334 6.73437 6.83790 6.86011 7.00309 7.27910 7.29515 7.65089 7.75637 7.79015 8.31377 8.43915 9.15151 9.77524 10.25900 11.24386 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002585 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.800195 B =10829.136361 C =11949.587819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.260 4.260 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.152 4.152 14 C 0.094 3.906 15 N -0.608 5.608 16 C 0.601 3.399 17 O -0.538 6.538 18 C -0.273 4.273 19 C 0.095 3.905 20 N -0.467 5.467 21 H 0.443 0.557 22 N -0.287 5.287 23 C 0.174 3.826 24 C -0.032 4.032 25 C -0.088 4.088 26 C -0.138 4.138 27 C -0.107 4.107 28 C -0.130 4.130 29 C -0.049 4.049 30 C 0.088 3.912 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.003 0.997 34 H 0.253 0.747 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.199 0.801 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.124 0.876 44 H 0.146 0.854 45 H 0.074 0.926 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -21.333 -3.072 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.389 4.389 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.030 4.030 15 N -0.341 5.341 16 C 0.391 3.609 17 O -0.417 6.417 18 C -0.288 4.288 19 C -0.055 4.055 20 N -0.172 5.172 21 H 0.287 0.713 22 N -0.108 5.108 23 C 0.006 3.994 24 C -0.034 4.034 25 C -0.107 4.107 26 C -0.156 4.156 27 C -0.126 4.126 28 C -0.148 4.148 29 C -0.068 4.068 30 C -0.036 4.036 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.216 0.784 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.142 0.858 44 H 0.163 0.837 45 H 0.092 0.908 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.816 -22.331 -3.488 22.921 hybrid contribution 0.194 1.546 0.593 1.667 sum 4.010 -20.785 -2.894 21.365 Atomic orbital electron populations 1.20819 0.82475 0.95689 0.99649 1.43817 1.01843 0.99869 1.84939 1.19254 0.98725 0.85276 1.35672 0.91195 1.25022 0.97939 0.98612 0.97785 1.70073 1.20198 1.27306 1.37265 0.86179 0.78622 0.84149 0.77560 1.20203 1.21540 1.21720 1.21416 0.96443 0.85833 0.90047 0.90330 1.23246 1.03022 0.92322 1.00620 1.22339 0.99954 0.99750 0.80933 1.48272 1.69356 1.09709 1.06791 1.16758 0.76649 0.82086 0.85400 1.90742 1.53492 1.83579 1.13913 1.21315 1.20626 0.95161 0.91654 1.23870 0.96016 0.86433 0.99147 1.45980 1.55849 1.07451 1.07960 0.71263 1.77309 1.24989 1.21071 0.87430 1.21835 0.95511 0.89036 0.93054 1.17665 0.99122 0.99591 0.87052 1.21137 0.97444 0.97097 0.95066 1.20962 1.00427 1.00911 0.93265 1.21257 0.95531 0.96070 0.99701 1.21108 0.99588 0.99243 0.94911 1.21666 0.97660 0.94449 0.93023 1.23006 1.01276 0.78894 1.00413 0.94784 0.93996 0.97884 0.93709 0.90422 0.90384 0.91889 0.91734 0.78445 0.86035 0.86060 0.86215 0.85800 0.83681 0.90754 0.91319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.65 7.61 59.85 0.46 4.11 16 2 N -0.58 -13.72 2.96 -171.03 -0.51 -14.22 16 3 C -0.26 -6.83 9.60 -15.06 -0.14 -6.97 16 4 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.32 10.79 55.49 0.60 -24.72 16 7 Si 0.91 21.27 29.58 -169.99 -5.03 16.24 16 8 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 C 0.17 3.27 3.54 -65.78 -0.23 3.03 16 12 H 0.08 1.51 7.95 -51.93 -0.41 1.10 16 13 C -0.15 -2.30 6.51 -24.89 -0.16 -2.47 16 14 C 0.09 1.12 5.00 -3.06 -0.02 1.10 16 15 N -0.61 -9.20 3.33 -171.82 -0.57 -9.77 16 16 C 0.60 9.59 7.71 -12.58 -0.10 9.49 16 17 O -0.54 -9.93 12.70 5.26 0.07 -9.87 16 18 C -0.27 -3.69 6.23 -102.95 -0.64 -4.33 16 19 C 0.09 0.91 10.49 -16.63 -0.17 0.74 16 20 N -0.47 -4.14 7.20 30.81 0.22 -3.91 16 21 H 0.44 2.14 8.96 -182.85 -1.64 0.50 16 22 N -0.29 -3.58 12.63 34.57 0.44 -3.14 16 23 C 0.17 2.44 6.94 -80.56 -0.56 1.88 16 24 C -0.03 -0.45 5.73 -104.91 -0.60 -1.05 16 25 C -0.09 -1.07 9.76 -39.24 -0.38 -1.46 16 26 C -0.14 -1.46 10.03 -39.63 -0.40 -1.86 16 27 C -0.11 -1.14 10.04 -39.51 -0.40 -1.54 16 28 C -0.13 -1.59 10.03 -39.63 -0.40 -1.99 16 29 C -0.05 -0.69 7.77 -39.24 -0.31 -1.00 16 30 C 0.09 1.56 6.46 -2.52 -0.02 1.54 16 31 H 0.03 0.85 7.33 -51.93 -0.38 0.46 16 32 H 0.04 1.06 7.39 -51.93 -0.38 0.67 16 33 H 0.00 0.06 6.34 -51.93 -0.33 -0.27 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.27 7.08 -51.93 -0.37 0.90 16 37 H 0.06 0.61 7.05 -51.93 -0.37 0.25 16 38 H 0.06 0.63 6.83 -51.93 -0.35 0.27 16 39 H 0.20 1.30 4.46 -52.49 -0.23 1.06 16 40 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 44 H 0.15 2.27 5.64 -52.49 -0.30 1.97 16 45 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 46 H 0.07 1.27 6.34 -51.93 -0.33 0.94 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -32.54 368.99 -10.55 -43.09 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.17 Total: 1.48 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -4.16 Total: -0.72 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: 0.18 Total: -55.77 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.07 Total: -9.87 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.24 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.54 -10.55 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.288 kcal (2) G-P(sol) polarization free energy of solvation -32.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds