Wall clock time and date at job start Sat Apr 11 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 119.99999 * 2 1 4 4 H 1.08004 * 119.99729 * 203.30081 * 3 2 1 5 5 C 1.38804 * 120.00484 * 23.29993 * 3 2 1 6 6 N 1.31624 * 120.00097 * 14.01025 * 5 3 2 7 7 Si 1.86803 * 120.00377 * 194.01259 * 5 3 2 8 8 H 1.48496 * 109.47023 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46934 * 119.99744 * 7 5 3 10 10 H 1.48497 * 109.47261 * 239.99647 * 7 5 3 11 11 C 1.46505 * 119.99985 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88507 * 182.43415 * 11 2 1 13 13 C 1.55156 * 111.00642 * 306.35535 * 11 2 1 14 14 C 1.54335 * 103.02191 * 153.37817 * 13 11 2 15 15 N 1.47024 * 107.26513 * 338.14405 * 14 13 11 16 16 C 1.34773 * 125.64924 * 178.84754 * 15 14 13 17 17 O 1.21623 * 120.00101 * 179.68856 * 16 15 14 18 18 C 1.47287 * 120.00073 * 359.69146 * 16 15 14 19 19 C 1.37967 * 126.80575 * 359.95988 * 18 16 15 20 20 N 1.34161 * 107.88613 * 180.02562 * 19 18 16 21 21 H 0.96994 * 125.15970 * 179.97438 * 20 19 18 22 22 N 1.39776 * 109.67118 * 359.76703 * 20 19 18 23 23 C 1.31364 * 109.07877 * 0.39850 * 22 20 19 24 24 C 1.48295 * 126.50638 * 179.88699 * 23 22 20 25 25 C 1.39381 * 120.12576 * 324.67889 * 24 23 22 26 26 C 1.38006 * 119.87416 * 179.97438 * 25 24 23 27 27 C 1.38333 * 120.12632 * 359.97438 * 26 25 24 28 28 C 1.38334 * 120.24992 * 0.02562 * 27 26 25 29 29 C 1.38008 * 120.12626 * 0.02562 * 28 27 26 30 30 C 1.47430 * 108.70351 * 358.58087 * 15 14 13 31 31 H 1.08994 * 109.47682 * 275.17800 * 1 2 3 32 32 H 1.09006 * 109.46650 * 35.17777 * 1 2 3 33 33 H 1.09001 * 109.46835 * 155.17173 * 1 2 3 34 34 H 0.96993 * 120.00374 * 180.02562 * 6 5 3 35 35 H 1.09002 * 110.72151 * 271.94197 * 13 11 2 36 36 H 1.09003 * 110.71700 * 35.03116 * 13 11 2 37 37 H 1.08998 * 109.99007 * 218.66942 * 14 13 11 38 38 H 1.08996 * 109.77632 * 97.49285 * 14 13 11 39 39 H 1.07999 * 126.05301 * 0.02562 * 19 18 16 40 40 H 1.08004 * 120.06033 * 359.96581 * 25 24 23 41 41 H 1.07996 * 119.93774 * 180.02562 * 26 25 24 42 42 H 1.07996 * 119.87817 * 179.74475 * 27 26 25 43 43 H 1.08001 * 119.93550 * 179.97438 * 28 27 26 44 44 H 1.07997 * 120.06167 * 180.02562 * 29 28 27 45 45 H 1.09003 * 110.36814 * 143.19271 * 30 15 14 46 46 H 1.08999 * 110.37156 * 265.40982 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1637 1.2240 -0.3700 5 6 1.5407 2.3390 0.4755 6 7 0.4276 2.2557 1.1731 7 14 2.3005 4.0092 0.1252 8 1 3.5397 3.8315 -0.6735 9 1 1.3359 4.8417 -0.6374 10 1 2.6296 4.6821 1.4074 11 6 2.1975 -1.2688 0.0006 12 1 3.2729 -1.0965 0.0437 13 6 1.7320 -2.1792 1.1675 14 6 2.0326 -3.5989 0.6421 15 7 2.0992 -3.5165 -0.8243 16 6 2.3643 -4.5421 -1.6575 17 8 2.3885 -4.3586 -2.8595 18 6 2.6246 -5.8854 -1.1123 19 6 2.6334 -6.2500 0.2183 20 7 2.9124 -7.5606 0.2845 21 1 2.9809 -8.0764 1.1031 22 7 3.0846 -8.0708 -1.0053 23 6 2.9264 -7.0998 -1.8758 24 6 3.0275 -7.2124 -3.3511 25 6 3.9534 -8.0822 -3.9245 26 6 4.0427 -8.1832 -5.2979 27 6 3.2152 -7.4236 -6.1052 28 6 2.2944 -6.5587 -5.5416 29 6 2.1970 -6.4487 -4.1694 30 6 1.8217 -2.1274 -1.2328 31 1 -0.3634 0.0927 1.0234 32 1 -0.3633 0.8401 -0.5921 33 1 -0.3633 -0.9327 -0.4315 34 1 0.0018 3.0615 1.5050 35 1 2.3045 -1.9707 2.0713 36 1 0.6649 -2.0550 1.3514 37 1 1.2372 -4.2824 0.9392 38 1 2.9878 -3.9440 1.0376 39 1 2.4484 -5.5962 1.0577 40 1 4.5998 -8.6759 -3.2951 41 1 4.7595 -8.8572 -5.7433 42 1 3.2913 -7.5028 -7.1796 43 1 1.6511 -5.9677 -6.1768 44 1 1.4775 -5.7734 -3.7305 45 1 2.4389 -1.8530 -2.0883 46 1 0.7655 -2.0065 -1.4737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972034210.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:43 Heat of formation + Delta-G solvation = 90.122656 kcal Electronic energy + Delta-G solvation = -29054.564548 eV Core-core repulsion = 25139.278877 eV Total energy + Delta-G solvation = -3915.285671 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.31349 -40.62461 -39.75797 -38.67202 -36.55331 -33.85873 -33.54123 -31.97540 -31.70232 -31.10212 -30.61945 -29.07588 -28.03338 -25.73579 -24.51342 -24.32566 -23.53325 -22.50135 -21.41923 -20.88630 -20.57273 -18.93168 -18.53959 -17.77224 -17.62932 -17.44046 -16.49866 -16.43102 -16.19772 -15.85841 -15.65177 -15.36720 -15.02879 -14.90349 -14.60989 -14.36311 -14.31523 -14.09806 -13.97800 -13.71258 -13.54206 -13.28296 -12.86992 -12.83438 -12.52074 -12.40726 -12.16009 -12.13930 -12.10202 -12.05493 -11.83063 -11.75929 -11.41931 -11.06714 -10.86465 -10.63946 -9.98899 -9.75456 -9.57925 -9.31952 -8.76461 -7.82924 -5.31680 0.01724 0.50034 0.57916 1.25917 1.46720 1.49830 1.58976 1.67487 2.05770 2.37552 2.52602 2.96504 3.25198 3.30712 3.54185 3.59085 3.80267 3.94617 4.05041 4.16752 4.19286 4.21286 4.28834 4.32342 4.35010 4.37446 4.49397 4.61050 4.68518 4.76105 4.78609 4.92590 4.94485 5.03724 5.14901 5.20709 5.24962 5.31735 5.34389 5.46597 5.57936 5.65075 5.66605 5.69288 5.73201 6.11419 6.21178 6.33157 6.41245 6.63403 7.14966 7.25627 7.85810 8.29342 9.19661 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017061 B = 0.002585 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.800195 B =10829.136361 C =11949.587819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.601 5.601 3 C -0.265 4.265 4 H 0.069 0.931 5 C -0.046 4.046 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.269 1.269 9 H -0.293 1.293 10 H -0.290 1.290 11 C 0.165 3.835 12 H 0.073 0.927 13 C -0.140 4.140 14 C 0.096 3.904 15 N -0.609 5.609 16 C 0.597 3.403 17 O -0.574 6.574 18 C -0.308 4.308 19 C 0.129 3.871 20 N -0.445 5.445 21 H 0.463 0.537 22 N -0.301 5.301 23 C 0.158 3.842 24 C -0.054 4.054 25 C -0.097 4.097 26 C -0.134 4.134 27 C -0.106 4.106 28 C -0.143 4.143 29 C -0.071 4.071 30 C 0.102 3.898 31 H 0.014 0.986 32 H 0.010 0.990 33 H 0.030 0.970 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.236 0.764 40 H 0.131 0.869 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.133 0.867 44 H 0.122 0.878 45 H 0.051 0.949 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 -23.698 -2.148 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.395 4.395 4 H 0.086 0.914 5 C -0.242 4.242 6 N -0.578 5.578 7 Si 0.793 3.207 8 H -0.194 1.194 9 H -0.220 1.220 10 H -0.217 1.217 11 C 0.056 3.944 12 H 0.091 0.909 13 C -0.180 4.180 14 C -0.026 4.026 15 N -0.342 5.342 16 C 0.389 3.611 17 O -0.456 6.456 18 C -0.323 4.323 19 C -0.022 4.022 20 N -0.152 5.152 21 H 0.312 0.688 22 N -0.123 5.123 23 C -0.010 4.010 24 C -0.056 4.056 25 C -0.116 4.116 26 C -0.152 4.152 27 C -0.124 4.124 28 C -0.161 4.161 29 C -0.091 4.091 30 C -0.023 4.023 31 H 0.033 0.967 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.252 0.748 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.168 0.832 43 H 0.151 0.849 44 H 0.140 0.860 45 H 0.070 0.930 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.182 -24.771 -2.534 25.433 hybrid contribution -0.188 2.174 0.281 2.200 sum 4.994 -22.597 -2.253 23.252 Atomic orbital electron populations 1.20514 0.82659 0.95663 0.97980 1.43959 1.02008 1.00879 1.85369 1.19525 0.98720 0.86679 1.34613 0.91360 1.25695 0.98679 1.01550 0.98285 1.70206 1.21448 1.27609 1.38570 0.85253 0.77919 0.80380 0.77168 1.19377 1.22049 1.21690 1.21540 0.95742 0.84822 0.92254 0.90917 1.23065 1.02365 0.93265 0.99313 1.22561 1.03109 0.98285 0.78638 1.48243 1.69447 1.08270 1.08231 1.17142 0.75961 0.82957 0.85031 1.90729 1.54991 1.84239 1.15626 1.21159 1.23925 0.93860 0.93391 1.24235 0.92926 0.86654 0.98406 1.46026 1.53914 1.07491 1.07816 0.68797 1.77258 1.25406 1.21067 0.88537 1.21952 0.96102 0.89603 0.93356 1.17906 0.99785 1.00277 0.87659 1.21347 0.97255 0.96957 0.96083 1.21363 1.00417 1.00707 0.92692 1.21607 0.94477 0.94981 1.01331 1.21334 1.00431 0.99950 0.94377 1.21568 0.98239 0.95157 0.94107 1.22583 0.99916 0.80701 0.99094 0.96739 0.97141 0.95164 0.94207 0.89346 0.91405 0.88400 0.88259 0.74799 0.85137 0.82960 0.83209 0.84937 0.86002 0.92994 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.34 7.61 127.77 0.97 9.32 16 2 N -0.60 -28.59 2.96 -695.01 -2.05 -30.65 16 3 C -0.27 -14.13 9.60 84.03 0.81 -13.33 16 4 H 0.07 3.58 7.86 -2.91 -0.02 3.56 16 5 C -0.05 -2.53 5.08 84.86 0.43 -2.10 16 6 N -0.93 -53.35 10.79 21.65 0.23 -53.12 16 7 Si 0.96 44.34 29.58 68.60 2.03 46.37 16 8 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 C 0.17 6.17 3.54 46.38 0.16 6.34 16 12 H 0.07 2.78 7.95 -2.39 -0.02 2.77 16 13 C -0.14 -3.95 6.51 31.79 0.21 -3.74 16 14 C 0.10 1.93 5.00 86.73 0.43 2.37 16 15 N -0.61 -17.68 3.33 -815.78 -2.71 -20.39 16 16 C 0.60 18.90 7.71 86.62 0.67 19.57 16 17 O -0.57 -22.13 12.70 -4.10 -0.05 -22.18 16 18 C -0.31 -7.88 6.23 -18.78 -0.12 -8.00 16 19 C 0.13 1.98 10.49 84.27 0.88 2.86 16 20 N -0.45 -6.28 7.20 -56.42 -0.41 -6.69 16 21 H 0.46 2.47 8.96 -213.54 -1.91 0.55 16 22 N -0.30 -6.94 12.63 -44.53 -0.56 -7.51 16 23 C 0.16 4.32 6.94 44.07 0.31 4.62 16 24 C -0.05 -1.54 5.73 -20.05 -0.11 -1.66 16 25 C -0.10 -2.29 9.76 22.49 0.22 -2.07 16 26 C -0.13 -2.60 10.03 22.24 0.22 -2.38 16 27 C -0.11 -2.10 10.04 22.32 0.22 -1.87 16 28 C -0.14 -3.54 10.03 22.24 0.22 -3.32 16 29 C -0.07 -2.13 7.77 22.49 0.17 -1.95 16 30 C 0.10 3.64 6.46 86.85 0.56 4.21 16 31 H 0.01 0.73 7.33 -2.39 -0.02 0.72 16 32 H 0.01 0.52 7.39 -2.38 -0.02 0.50 16 33 H 0.03 1.23 6.34 -2.39 -0.02 1.21 16 34 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.07 2.08 7.08 -2.39 -0.02 2.06 16 37 H 0.10 1.38 7.05 -2.39 -0.02 1.37 16 38 H 0.10 1.39 6.83 -2.39 -0.02 1.37 16 39 H 0.24 1.66 4.46 -2.91 -0.01 1.64 16 40 H 0.13 2.73 8.06 -2.91 -0.02 2.70 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 43 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 44 H 0.12 4.13 5.64 -2.91 -0.02 4.12 16 45 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 46 H 0.06 2.13 6.34 -2.39 -0.02 2.11 16 Total: -1.00 -74.93 368.99 1.86 -73.07 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -0.88 Total: 12.22 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.26 Total: 8.87 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -5.50 Total: -118.35 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.05 Total: -22.18 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -74.93 1.86 -73.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034210.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.194 kcal (2) G-P(sol) polarization free energy of solvation -74.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds