Wall clock time and date at job start Sat Apr 11 2020 06:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 119.99907 * 2 1 4 4 H 1.08002 * 120.00032 * 204.38338 * 3 2 1 5 5 C 1.38808 * 119.99962 * 24.38273 * 3 2 1 6 6 N 1.31612 * 120.00380 * 14.84595 * 5 3 2 7 7 Si 1.86811 * 119.99851 * 194.84481 * 5 3 2 8 8 H 1.48501 * 109.46649 * 90.00106 * 7 5 3 9 9 H 1.48499 * 109.47072 * 209.99926 * 7 5 3 10 10 H 1.48500 * 109.47274 * 329.99971 * 7 5 3 11 11 C 1.46502 * 120.00253 * 180.27851 * 2 1 3 12 12 H 1.08995 * 110.64367 * 180.70076 * 11 2 1 13 13 C 1.55163 * 110.71702 * 57.55758 * 11 2 1 14 14 C 1.54916 * 101.57814 * 206.13579 * 13 11 2 15 15 N 1.47431 * 104.82921 * 37.00912 * 14 13 11 16 16 C 1.34783 * 125.64418 * 155.90356 * 15 14 13 17 17 O 1.21617 * 120.00263 * 4.81030 * 16 15 14 18 18 C 1.47284 * 119.99716 * 184.81117 * 16 15 14 19 19 C 1.37963 * 126.81281 * 353.37971 * 18 16 15 20 20 N 1.34154 * 107.88932 * 179.97438 * 19 18 16 21 21 H 0.97000 * 125.15814 * 179.97438 * 20 19 18 22 22 N 1.39766 * 109.67701 * 0.02562 * 20 19 18 23 23 C 1.31370 * 109.07824 * 359.72569 * 22 20 19 24 24 C 1.48290 * 126.51144 * 180.24013 * 23 22 20 25 25 C 1.39382 * 120.11853 * 144.92353 * 24 23 22 26 26 C 1.38018 * 119.87062 * 179.74793 * 25 24 23 27 27 C 1.38328 * 120.12112 * 0.52880 * 26 25 24 28 28 C 1.38328 * 120.25410 * 359.74614 * 27 26 25 29 29 C 1.38006 * 120.12887 * 359.97438 * 28 27 26 30 30 C 1.47314 * 108.74121 * 335.71606 * 15 14 13 31 31 H 1.08997 * 109.47210 * 273.85790 * 1 2 3 32 32 H 1.09003 * 109.47254 * 33.85985 * 1 2 3 33 33 H 1.08995 * 109.46967 * 153.85308 * 1 2 3 34 34 H 0.97001 * 120.00596 * 180.02562 * 6 5 3 35 35 H 1.08998 * 111.00641 * 324.20778 * 13 11 2 36 36 H 1.08996 * 111.00153 * 88.02691 * 13 11 2 37 37 H 1.09003 * 110.36662 * 155.84455 * 14 13 11 38 38 H 1.08997 * 110.36924 * 278.06418 * 14 13 11 39 39 H 1.08001 * 126.05230 * 359.96094 * 19 18 16 40 40 H 1.07996 * 120.07065 * 0.02562 * 25 24 23 41 41 H 1.07992 * 119.93988 * 180.27548 * 26 25 24 42 42 H 1.08002 * 119.87280 * 179.72362 * 27 26 25 43 43 H 1.07997 * 119.93708 * 180.02562 * 28 27 26 44 44 H 1.08000 * 120.06630 * 180.02562 * 29 28 27 45 45 H 1.09003 * 110.06344 * 241.87734 * 30 15 14 46 46 H 1.08991 * 109.85338 * 120.60885 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1574 1.2277 -0.3861 5 6 1.5484 2.3344 0.4963 6 7 0.4562 2.2432 1.2250 7 14 2.2896 4.0096 0.1299 8 1 1.7053 4.5454 -1.1258 9 1 1.9922 4.9382 1.2499 10 1 3.7605 3.8768 -0.0258 11 6 2.1975 -1.2687 -0.0062 12 1 3.2729 -1.0916 0.0072 13 6 1.7978 -2.1274 -1.2352 14 6 2.0902 -3.5596 -0.7222 15 7 1.7030 -3.5373 0.7002 16 6 1.3466 -4.6102 1.4341 17 8 1.4103 -5.7250 0.9522 18 6 0.8800 -4.4324 2.8197 19 6 0.8722 -3.2590 3.5453 20 7 0.3695 -3.5286 4.7595 21 1 0.2518 -2.8807 5.4717 22 7 0.0424 -4.8848 4.8429 23 6 0.3265 -5.4662 3.6996 24 6 0.1284 -6.8970 3.3641 25 6 -0.2395 -7.2679 2.0718 26 6 -0.4174 -8.6014 1.7638 27 6 -0.2420 -9.5682 2.7375 28 6 0.1175 -9.2054 4.0231 29 6 0.3038 -7.8754 4.3411 30 6 1.7743 -2.1493 1.1885 31 1 -0.3633 0.0691 1.0253 32 1 -0.3634 0.8534 -0.5726 33 1 -0.3633 -0.9225 -0.4528 34 1 0.0359 3.0458 1.5715 35 1 0.7405 -2.0049 -1.4701 36 1 2.4182 -1.8867 -2.0983 37 1 1.4898 -4.2878 -1.2674 38 1 3.1506 -3.7902 -0.8248 39 1 1.2110 -2.2943 3.1974 40 1 -0.3806 -6.5137 1.3119 41 1 -0.6981 -8.8904 0.7618 42 1 -0.3867 -10.6102 2.4932 43 1 0.2535 -9.9644 4.7792 44 1 0.5848 -7.5933 5.3450 45 1 2.5127 -2.0710 1.9865 46 1 0.7966 -1.8344 1.5530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972034211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:48 Heat of formation + Delta-G solvation = 106.268164 kcal Electronic energy + Delta-G solvation = -29403.091822 eV Core-core repulsion = 25488.506273 eV Total energy + Delta-G solvation = -3914.585549 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22985 -39.33738 -38.81940 -37.30330 -34.78503 -32.84076 -31.88553 -31.06675 -30.76667 -29.75667 -29.06374 -27.90028 -26.15638 -24.34050 -23.51833 -22.85130 -22.50824 -21.30633 -20.28736 -19.61622 -19.32765 -17.37679 -17.12496 -16.75706 -16.42338 -15.87255 -15.44978 -15.09387 -14.99354 -14.81605 -14.38637 -14.03638 -13.78724 -13.44813 -13.37660 -13.24601 -12.90631 -12.77392 -12.59116 -12.48689 -12.18433 -11.80149 -11.48025 -11.35638 -11.22912 -11.00096 -10.89602 -10.80020 -10.64329 -10.59527 -10.35096 -10.08427 -9.99976 -9.92767 -9.62988 -8.89122 -8.80431 -8.68404 -8.38253 -8.24495 -6.92546 -5.89389 -3.37514 1.01614 1.51975 1.56847 2.32622 2.63659 3.27657 3.30132 3.36988 3.37339 3.57145 3.93217 4.30067 4.37144 4.61374 4.88025 4.98362 5.00883 5.08550 5.13893 5.28637 5.30842 5.35438 5.39769 5.42745 5.52790 5.59375 5.68597 5.72059 5.85215 5.91715 5.99337 6.11969 6.12344 6.19302 6.28800 6.44930 6.51181 6.56645 6.60582 6.64746 6.67983 6.79061 7.02423 7.05805 7.19203 7.44956 7.53652 7.67264 7.83039 8.23294 8.49021 9.06199 9.68602 10.17920 11.14962 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.002762 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.860735 B =10133.483650 C =11075.764541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.585 5.585 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.007 3.993 6 N -0.903 5.903 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.173 3.827 12 H 0.081 0.919 13 C -0.154 4.154 14 C 0.114 3.886 15 N -0.610 5.610 16 C 0.605 3.395 17 O -0.546 6.546 18 C -0.280 4.280 19 C 0.107 3.893 20 N -0.464 5.464 21 H 0.445 0.555 22 N -0.288 5.288 23 C 0.170 3.830 24 C -0.024 4.024 25 C -0.048 4.048 26 C -0.130 4.130 27 C -0.110 4.110 28 C -0.136 4.136 29 C -0.089 4.089 30 C 0.070 3.930 31 H 0.030 0.970 32 H 0.042 0.958 33 H 0.004 0.996 34 H 0.254 0.746 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.203 0.797 40 H 0.138 0.862 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.063 0.937 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 -15.900 3.782 16.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.305 5.305 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.547 5.547 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.099 0.901 13 C -0.194 4.194 14 C -0.009 4.009 15 N -0.344 5.344 16 C 0.395 3.605 17 O -0.426 6.426 18 C -0.295 4.295 19 C -0.043 4.043 20 N -0.169 5.169 21 H 0.289 0.711 22 N -0.109 5.109 23 C 0.001 3.999 24 C -0.026 4.026 25 C -0.068 4.068 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.154 4.154 29 C -0.108 4.108 30 C -0.055 4.055 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.155 0.845 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.081 0.919 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.095 -16.482 4.843 17.214 hybrid contribution 0.633 1.769 -0.383 1.918 sum -0.462 -14.713 4.460 15.381 Atomic orbital electron populations 1.20795 0.82598 0.96081 0.99296 1.43899 1.01753 0.99921 1.84976 1.19209 0.99504 0.85432 1.35040 0.91222 1.25042 0.98088 0.98686 0.97373 1.70046 1.21478 1.27718 1.35424 0.86254 0.78778 0.83951 0.77519 1.21380 1.21757 1.20375 1.21371 0.96565 0.85728 0.90092 0.90135 1.23373 1.02764 0.93312 0.99928 1.22154 0.99713 0.98254 0.80777 1.48392 1.66692 1.07452 1.11827 1.16764 0.76866 0.83245 0.83630 1.90738 1.55956 1.23223 1.72691 1.21211 1.18376 0.92617 0.97258 1.24042 0.94048 1.00536 0.85700 1.46001 1.49687 1.08238 1.13019 0.71071 1.77270 1.23775 0.88767 1.21060 1.21791 0.95303 0.93175 0.89639 1.17662 1.03056 0.87476 0.94440 1.21448 0.93734 0.96715 0.94864 1.21060 1.01594 0.92727 0.99392 1.21221 0.98905 0.99295 0.93394 1.20962 1.01958 0.95642 0.96842 1.21152 0.98667 0.92463 0.98561 1.23280 1.01518 0.80581 1.00160 0.95154 0.93892 0.97707 0.93595 0.90569 0.90365 0.91041 0.91840 0.78086 0.84461 0.85916 0.86272 0.86078 0.85963 0.91901 0.90566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.45 7.67 59.84 0.46 3.91 16 2 N -0.58 -12.89 2.93 -171.39 -0.50 -13.39 16 3 C -0.26 -6.51 9.57 -15.06 -0.14 -6.66 16 4 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 5 C 0.01 0.19 5.05 -17.43 -0.09 0.10 16 6 N -0.90 -24.15 10.91 55.49 0.61 -23.54 16 7 Si 0.91 20.41 29.58 -169.99 -5.03 15.38 16 8 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 11 C 0.17 3.05 3.43 -66.09 -0.23 2.83 16 12 H 0.08 1.42 7.94 -51.93 -0.41 1.01 16 13 C -0.15 -2.34 6.61 -24.58 -0.16 -2.50 16 14 C 0.11 1.63 6.89 -2.52 -0.02 1.62 16 15 N -0.61 -9.54 3.33 -171.59 -0.57 -10.11 16 16 C 0.60 10.10 7.55 -12.58 -0.09 10.00 16 17 O -0.55 -9.98 13.12 5.26 0.07 -9.91 16 18 C -0.28 -4.36 6.22 -102.95 -0.64 -5.00 16 19 C 0.11 1.42 10.49 -16.64 -0.17 1.24 16 20 N -0.46 -5.62 7.20 30.81 0.22 -5.40 16 21 H 0.44 3.82 8.96 -182.85 -1.64 2.18 16 22 N -0.29 -4.19 12.63 34.58 0.44 -3.76 16 23 C 0.17 2.64 6.94 -80.56 -0.56 2.08 16 24 C -0.02 -0.36 5.70 -104.91 -0.60 -0.96 16 25 C -0.05 -0.70 7.75 -39.24 -0.30 -1.01 16 26 C -0.13 -1.58 10.03 -39.63 -0.40 -1.98 16 27 C -0.11 -1.17 10.04 -39.52 -0.40 -1.57 16 28 C -0.14 -1.48 10.03 -39.63 -0.40 -1.88 16 29 C -0.09 -1.14 9.76 -39.24 -0.38 -1.53 16 30 C 0.07 1.10 4.65 -2.90 -0.01 1.09 16 31 H 0.03 0.72 7.27 -51.93 -0.38 0.34 16 32 H 0.04 1.04 7.40 -51.93 -0.38 0.66 16 33 H 0.00 0.09 6.28 -51.93 -0.33 -0.24 16 34 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.08 1.24 6.28 -51.93 -0.33 0.91 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.20 2.49 4.51 -52.49 -0.24 2.26 16 40 H 0.14 2.17 5.90 -52.49 -0.31 1.86 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 45 H 0.06 0.93 7.11 -51.93 -0.37 0.56 16 46 H 0.08 1.29 5.58 -51.93 -0.29 1.00 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -30.20 369.42 -10.52 -40.72 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.18 Total: 4.64 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.14 Total: -0.21 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: 0.19 Total: -56.19 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.20 -10.52 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.985 kcal (2) G-P(sol) polarization free energy of solvation -30.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds