Wall clock time and date at job start Sat Apr 11 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36939 * 119.99907 * 2 1 4 4 H 1.08002 * 120.00032 * 204.38338 * 3 2 1 5 5 C 1.38808 * 119.99962 * 24.38273 * 3 2 1 6 6 N 1.31612 * 120.00380 * 14.84595 * 5 3 2 7 7 Si 1.86811 * 119.99851 * 194.84481 * 5 3 2 8 8 H 1.48501 * 109.46649 * 90.00106 * 7 5 3 9 9 H 1.48499 * 109.47072 * 209.99926 * 7 5 3 10 10 H 1.48500 * 109.47274 * 329.99971 * 7 5 3 11 11 C 1.46502 * 120.00253 * 180.27851 * 2 1 3 12 12 H 1.08995 * 110.64367 * 180.70076 * 11 2 1 13 13 C 1.55163 * 110.71702 * 57.55758 * 11 2 1 14 14 C 1.54916 * 101.57814 * 206.13579 * 13 11 2 15 15 N 1.47431 * 104.82921 * 37.00912 * 14 13 11 16 16 C 1.34783 * 125.64418 * 155.90356 * 15 14 13 17 17 O 1.21617 * 120.00263 * 4.81030 * 16 15 14 18 18 C 1.47284 * 119.99716 * 184.81117 * 16 15 14 19 19 C 1.37963 * 126.81281 * 353.37971 * 18 16 15 20 20 N 1.34154 * 107.88932 * 179.97438 * 19 18 16 21 21 H 0.97000 * 125.15814 * 179.97438 * 20 19 18 22 22 N 1.39766 * 109.67701 * 0.02562 * 20 19 18 23 23 C 1.31370 * 109.07824 * 359.72569 * 22 20 19 24 24 C 1.48290 * 126.51144 * 180.24013 * 23 22 20 25 25 C 1.39382 * 120.11853 * 144.92353 * 24 23 22 26 26 C 1.38018 * 119.87062 * 179.74793 * 25 24 23 27 27 C 1.38328 * 120.12112 * 0.52880 * 26 25 24 28 28 C 1.38328 * 120.25410 * 359.74614 * 27 26 25 29 29 C 1.38006 * 120.12887 * 359.97438 * 28 27 26 30 30 C 1.47314 * 108.74121 * 335.71606 * 15 14 13 31 31 H 1.08997 * 109.47210 * 273.85790 * 1 2 3 32 32 H 1.09003 * 109.47254 * 33.85985 * 1 2 3 33 33 H 1.08995 * 109.46967 * 153.85308 * 1 2 3 34 34 H 0.97001 * 120.00596 * 180.02562 * 6 5 3 35 35 H 1.08998 * 111.00641 * 324.20778 * 13 11 2 36 36 H 1.08996 * 111.00153 * 88.02691 * 13 11 2 37 37 H 1.09003 * 110.36662 * 155.84455 * 14 13 11 38 38 H 1.08997 * 110.36924 * 278.06418 * 14 13 11 39 39 H 1.08001 * 126.05230 * 359.96094 * 19 18 16 40 40 H 1.07996 * 120.07065 * 0.02562 * 25 24 23 41 41 H 1.07992 * 119.93988 * 180.27548 * 26 25 24 42 42 H 1.08002 * 119.87280 * 179.72362 * 27 26 25 43 43 H 1.07997 * 119.93708 * 180.02562 * 28 27 26 44 44 H 1.08000 * 120.06630 * 180.02562 * 29 28 27 45 45 H 1.09003 * 110.06344 * 241.87734 * 30 15 14 46 46 H 1.08991 * 109.85338 * 120.60885 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1574 1.2277 -0.3861 5 6 1.5484 2.3344 0.4963 6 7 0.4562 2.2432 1.2250 7 14 2.2896 4.0096 0.1299 8 1 1.7053 4.5454 -1.1258 9 1 1.9922 4.9382 1.2499 10 1 3.7605 3.8768 -0.0258 11 6 2.1975 -1.2687 -0.0062 12 1 3.2729 -1.0916 0.0072 13 6 1.7978 -2.1274 -1.2352 14 6 2.0902 -3.5596 -0.7222 15 7 1.7030 -3.5373 0.7002 16 6 1.3466 -4.6102 1.4341 17 8 1.4103 -5.7250 0.9522 18 6 0.8800 -4.4324 2.8197 19 6 0.8722 -3.2590 3.5453 20 7 0.3695 -3.5286 4.7595 21 1 0.2518 -2.8807 5.4717 22 7 0.0424 -4.8848 4.8429 23 6 0.3265 -5.4662 3.6996 24 6 0.1284 -6.8970 3.3641 25 6 -0.2395 -7.2679 2.0718 26 6 -0.4174 -8.6014 1.7638 27 6 -0.2420 -9.5682 2.7375 28 6 0.1175 -9.2054 4.0231 29 6 0.3038 -7.8754 4.3411 30 6 1.7743 -2.1493 1.1885 31 1 -0.3633 0.0691 1.0253 32 1 -0.3634 0.8534 -0.5726 33 1 -0.3633 -0.9225 -0.4528 34 1 0.0359 3.0458 1.5715 35 1 0.7405 -2.0049 -1.4701 36 1 2.4182 -1.8867 -2.0983 37 1 1.4898 -4.2878 -1.2674 38 1 3.1506 -3.7902 -0.8248 39 1 1.2110 -2.2943 3.1974 40 1 -0.3806 -6.5137 1.3119 41 1 -0.6981 -8.8904 0.7618 42 1 -0.3867 -10.6102 2.4932 43 1 0.2535 -9.9644 4.7792 44 1 0.5848 -7.5933 5.3450 45 1 2.5127 -2.0710 1.9865 46 1 0.7966 -1.8344 1.5530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972034211.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:47 Heat of formation + Delta-G solvation = 89.337456 kcal Electronic energy + Delta-G solvation = -29403.825993 eV Core-core repulsion = 25488.506273 eV Total energy + Delta-G solvation = -3915.319720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.34153 -40.61938 -39.75955 -38.70042 -36.42128 -33.87055 -33.44670 -32.41175 -31.78102 -30.79928 -30.32235 -29.28094 -28.00404 -25.71885 -24.55880 -24.31611 -23.54150 -22.44009 -21.47479 -20.88295 -20.57441 -18.89708 -18.52751 -17.77020 -17.61480 -17.33634 -16.62954 -16.52895 -16.12085 -15.95964 -15.59282 -15.39422 -15.08803 -14.87266 -14.50708 -14.44488 -14.32675 -14.00278 -13.92898 -13.57170 -13.51352 -13.19871 -13.03056 -12.73910 -12.48785 -12.38701 -12.35852 -12.17463 -12.14385 -12.00607 -11.82868 -11.75455 -11.41303 -11.10371 -10.91652 -10.59303 -10.02233 -9.76371 -9.54772 -9.33611 -8.75561 -7.81316 -5.30341 0.01591 0.44474 0.58172 1.24090 1.49975 1.53067 1.59457 1.63004 2.06860 2.34383 2.53757 2.96886 3.22833 3.31466 3.51743 3.56799 3.82981 3.91719 4.04544 4.12941 4.18402 4.22032 4.30166 4.34021 4.36538 4.36996 4.50821 4.61208 4.72196 4.75359 4.83741 4.88833 4.94077 5.05542 5.14722 5.18941 5.21236 5.28935 5.37513 5.48785 5.58880 5.64634 5.68086 5.69490 5.72728 6.11436 6.12445 6.34807 6.36784 6.55704 7.16568 7.22665 7.87029 8.32103 9.20899 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020465 B = 0.002762 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.860735 B =10133.483650 C =11075.764541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.597 5.597 3 C -0.262 4.262 4 H 0.074 0.926 5 C -0.044 4.044 6 N -0.931 5.931 7 Si 0.961 3.039 8 H -0.291 1.291 9 H -0.299 1.299 10 H -0.268 1.268 11 C 0.166 3.834 12 H 0.085 0.915 13 C -0.140 4.140 14 C 0.117 3.883 15 N -0.610 5.610 16 C 0.602 3.398 17 O -0.565 6.565 18 C -0.307 4.307 19 C 0.121 3.879 20 N -0.450 5.450 21 H 0.460 0.540 22 N -0.299 5.299 23 C 0.159 3.841 24 C -0.051 4.051 25 C -0.069 4.069 26 C -0.137 4.137 27 C -0.104 4.104 28 C -0.132 4.132 29 C -0.099 4.099 30 C 0.082 3.918 31 H 0.010 0.990 32 H 0.013 0.987 33 H 0.028 0.972 34 H 0.247 0.753 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.212 0.788 40 H 0.116 0.884 41 H 0.139 0.861 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.127 0.873 45 H 0.076 0.924 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.359 -17.543 3.905 17.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.318 5.318 3 C -0.392 4.392 4 H 0.092 0.908 5 C -0.240 4.240 6 N -0.577 5.577 7 Si 0.790 3.210 8 H -0.219 1.219 9 H -0.226 1.226 10 H -0.192 1.192 11 C 0.057 3.943 12 H 0.103 0.897 13 C -0.180 4.180 14 C -0.005 4.005 15 N -0.343 5.343 16 C 0.393 3.607 17 O -0.447 6.447 18 C -0.322 4.322 19 C -0.030 4.030 20 N -0.156 5.156 21 H 0.308 0.692 22 N -0.120 5.120 23 C -0.009 4.009 24 C -0.053 4.053 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.122 4.122 28 C -0.149 4.149 29 C -0.118 4.118 30 C -0.043 4.043 31 H 0.028 0.972 32 H 0.032 0.968 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.228 0.772 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.145 0.855 45 H 0.094 0.906 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.177 -18.142 4.970 18.812 hybrid contribution 0.358 2.178 -0.431 2.249 sum 0.181 -15.964 4.539 16.598 Atomic orbital electron populations 1.20495 0.82993 0.95848 0.97701 1.44003 1.01725 1.00829 1.85241 1.19510 0.99566 0.86520 1.33600 0.90806 1.25675 0.98833 1.01464 0.98004 1.70179 1.22800 1.27785 1.36905 0.85368 0.78579 0.80508 0.76552 1.21867 1.22569 1.19241 1.21530 0.96364 0.84534 0.91850 0.89726 1.23234 1.02334 0.93116 0.99310 1.22205 1.00660 0.97616 0.80050 1.48380 1.66634 1.07020 1.12270 1.16919 0.76622 0.83060 0.84062 1.90723 1.56817 1.23900 1.73222 1.21277 1.19993 0.93637 0.97286 1.24074 0.93119 1.00152 0.85695 1.46035 1.48519 1.07934 1.13151 0.69220 1.77223 1.24178 0.89639 1.20971 1.22048 0.95273 0.93830 0.89774 1.17872 1.04553 0.87682 0.95174 1.21375 0.95478 0.97461 0.94520 1.21329 1.01272 0.92099 1.00755 1.21620 0.97185 1.00616 0.92782 1.21363 1.00373 0.95426 0.97778 1.21329 0.98941 0.93140 0.98418 1.23023 1.01281 0.80415 0.99562 0.97184 0.96826 0.95369 0.94326 0.91599 0.88835 0.90755 0.90347 0.77156 0.86618 0.84327 0.82862 0.82931 0.85495 0.90603 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.75 7.67 127.77 0.98 8.73 16 2 N -0.60 -25.99 2.93 -696.15 -2.04 -28.02 16 3 C -0.26 -12.84 9.57 84.03 0.80 -12.04 16 4 H 0.07 3.50 7.87 -2.91 -0.02 3.48 16 5 C -0.04 -2.24 5.05 84.86 0.43 -1.81 16 6 N -0.93 -50.56 10.91 21.65 0.24 -50.32 16 7 Si 0.96 42.00 29.58 68.60 2.03 44.03 16 8 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 9 H -0.30 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 11 C 0.17 5.64 3.43 46.18 0.16 5.79 16 12 H 0.08 2.83 7.94 -2.39 -0.02 2.81 16 13 C -0.14 -4.03 6.61 31.99 0.21 -3.82 16 14 C 0.12 3.17 6.89 86.86 0.60 3.77 16 15 N -0.61 -18.53 3.33 -815.04 -2.72 -21.24 16 16 C 0.60 20.08 7.55 86.62 0.65 20.74 16 17 O -0.57 -20.84 13.12 -4.08 -0.05 -20.89 16 18 C -0.31 -9.60 6.22 -18.78 -0.12 -9.72 16 19 C 0.12 3.16 10.49 84.27 0.88 4.04 16 20 N -0.45 -10.57 7.20 -56.43 -0.41 -10.98 16 21 H 0.46 7.41 8.96 -213.53 -1.91 5.49 16 22 N -0.30 -8.64 12.63 -44.52 -0.56 -9.20 16 23 C 0.16 5.00 6.94 44.07 0.31 5.31 16 24 C -0.05 -1.52 5.70 -20.05 -0.11 -1.63 16 25 C -0.07 -2.03 7.75 22.49 0.17 -1.86 16 26 C -0.14 -3.18 10.03 22.24 0.22 -2.96 16 27 C -0.10 -1.95 10.04 22.31 0.22 -1.73 16 28 C -0.13 -2.55 10.03 22.24 0.22 -2.33 16 29 C -0.10 -2.45 9.76 22.49 0.22 -2.23 16 30 C 0.08 2.52 4.65 86.67 0.40 2.92 16 31 H 0.01 0.48 7.27 -2.39 -0.02 0.46 16 32 H 0.01 0.65 7.40 -2.39 -0.02 0.63 16 33 H 0.03 1.09 6.28 -2.39 -0.02 1.08 16 34 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 35 H 0.07 2.05 6.28 -2.39 -0.02 2.04 16 36 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.01 8.09 -2.39 -0.02 1.99 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.21 5.05 4.51 -2.91 -0.01 5.03 16 40 H 0.12 3.84 5.90 -2.91 -0.02 3.82 16 41 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 42 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 44 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 45 H 0.08 2.14 7.11 -2.39 -0.02 2.12 16 46 H 0.07 2.20 5.58 -2.39 -0.01 2.18 16 Total: -1.00 -65.32 369.42 1.87 -63.45 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.88 Total: 22.02 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 6.26 Total: 11.17 kcal Atomic # 7 Polarization: -114.29 SS G_CDS: -5.49 Total: -119.77 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -65.32 1.87 -63.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972034211.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.785 kcal (2) G-P(sol) polarization free energy of solvation -65.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds