Wall clock time and date at job start Sat Apr 11 2020 06:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99872 * 2 1 4 4 H 1.48490 * 109.47132 * 271.13716 * 3 2 1 5 5 H 1.48503 * 109.47103 * 31.13795 * 3 2 1 6 6 H 1.48499 * 109.47088 * 151.13412 * 3 2 1 7 7 C 1.38812 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99771 * 339.26116 * 7 2 1 9 9 N 1.36932 * 119.99636 * 158.98317 * 7 2 1 10 10 C 1.47162 * 121.07756 * 154.68445 * 9 7 2 11 11 C 1.53283 * 108.57927 * 128.79347 * 10 9 7 12 12 O 1.43120 * 109.23150 * 52.97272 * 11 10 9 13 13 C 1.41895 * 114.35968 * 299.10915 * 12 11 10 14 14 C 1.54364 * 110.71575 * 296.75779 * 13 12 11 15 15 C 1.54464 * 102.87322 * 276.29588 * 14 13 12 16 16 N 1.47079 * 107.29039 * 338.49950 * 15 14 13 17 17 C 1.34779 * 125.62796 * 178.98421 * 16 15 14 18 18 O 1.21282 * 120.00186 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99937 * 0.02827 * 17 16 15 20 20 O 1.42899 * 109.47190 * 179.97438 * 19 17 16 21 21 C 1.42905 * 113.99739 * 179.97438 * 20 19 17 22 22 H 1.08996 * 110.46094 * 332.60888 * 21 20 19 23 23 C 1.54510 * 110.50940 * 209.99755 * 21 20 19 24 24 C 1.54477 * 104.06593 * 241.35589 * 23 21 20 25 25 O 1.44425 * 104.80187 * 23.98399 * 24 23 21 26 26 C 1.44429 * 105.27522 * 319.48516 * 25 24 23 27 27 C 1.47578 * 108.74502 * 359.02280 * 16 15 14 28 28 C 1.47338 * 121.08226 * 334.40107 * 9 7 2 29 29 H 0.97000 * 119.99681 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.62021 * 248.51765 * 10 9 7 31 31 H 1.08997 * 109.61944 * 8.88225 * 10 9 7 32 32 H 1.08997 * 109.50994 * 172.89958 * 11 10 9 33 33 H 1.09000 * 109.50709 * 293.03979 * 11 10 9 34 34 H 1.09000 * 110.73538 * 34.64038 * 14 13 12 35 35 H 1.09004 * 110.73625 * 157.94690 * 14 13 12 36 36 H 1.08998 * 109.87815 * 97.92530 * 15 14 13 37 37 H 1.08990 * 109.87739 * 219.07453 * 15 14 13 38 38 H 1.09006 * 109.47175 * 299.99465 * 19 17 16 39 39 H 1.09005 * 109.47378 * 59.99582 * 19 17 16 40 40 H 1.09001 * 110.50889 * 0.02562 * 23 21 20 41 41 H 1.09002 * 110.50940 * 122.57699 * 23 21 20 42 42 H 1.09007 * 110.37259 * 142.80776 * 24 23 21 43 43 H 1.08990 * 110.37661 * 265.03840 * 24 23 21 44 44 H 1.09002 * 110.37291 * 281.68406 * 26 25 24 45 45 H 1.08997 * 110.37639 * 159.34199 * 26 25 24 46 46 H 1.08995 * 110.37087 * 264.47474 * 27 16 15 47 47 H 1.08998 * 110.37775 * 142.13168 * 27 16 15 48 48 H 1.09006 * 109.67560 * 348.91444 * 28 9 7 49 49 H 1.09002 * 109.67965 * 109.46157 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4737 2.0603 -1.3997 5 1 1.4599 2.6457 0.7240 6 1 3.5596 1.4334 0.6759 7 6 2.0103 -1.2022 0.0005 8 1 1.5228 -2.1070 0.3321 9 7 3.3113 -1.2417 -0.4248 10 6 4.2334 -2.2871 0.0471 11 6 4.9014 -2.9351 -1.1708 12 8 5.4849 -1.9146 -1.9870 13 6 4.5566 -0.9691 -2.4947 14 6 3.5391 -1.6525 -3.4331 15 6 4.2882 -1.6911 -4.7834 16 7 5.3322 -0.6563 -4.7338 17 6 6.2163 -0.3854 -5.7144 18 8 7.0378 0.4941 -5.5643 19 6 6.1840 -1.1753 -6.9974 20 8 7.2106 -0.7042 -7.8728 21 6 7.2672 -1.3909 -9.1247 22 1 6.8852 -2.4064 -9.0198 23 6 8.7139 -1.4099 -9.6668 24 6 8.6226 -0.6475 -11.0072 25 8 7.4580 0.1960 -10.8734 26 6 6.4729 -0.6192 -10.2017 27 6 5.2525 0.0359 -3.4329 28 6 3.8318 -0.2427 -1.3744 29 1 -0.4850 0.8401 -0.0004 30 1 4.9942 -1.8419 0.6882 31 1 3.6779 -3.0396 0.6068 32 1 5.6784 -3.6228 -0.8368 33 1 4.1550 -3.4808 -1.7480 34 1 3.3133 -2.6615 -3.0882 35 1 2.6288 -1.0584 -3.5136 36 1 4.7440 -2.6709 -4.9265 37 1 3.5953 -1.4800 -5.5977 38 1 6.3485 -2.2304 -6.7787 39 1 5.2129 -1.0506 -7.4765 40 1 9.3860 -0.8958 -8.9796 41 1 9.0473 -2.4348 -9.8299 42 1 9.5151 -0.0406 -11.1602 43 1 8.4939 -1.3467 -11.8334 44 1 6.0125 -1.3140 -10.9042 45 1 5.7140 0.0093 -9.7359 46 1 4.6583 0.9453 -3.5227 47 1 6.2517 0.2693 -3.0653 48 1 3.0058 0.3360 -1.7879 49 1 4.5271 0.4229 -0.8628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972378682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:07 Heat of formation + Delta-G solvation = -117.063744 kcal Electronic energy + Delta-G solvation = -30993.862528 eV Core-core repulsion = 26729.990909 eV Total energy + Delta-G solvation = -4263.871618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.55387 -39.99081 -38.93743 -37.15262 -36.20957 -34.73841 -32.11357 -31.69385 -31.65944 -29.84440 -29.34772 -28.50259 -27.44297 -25.41932 -23.82355 -23.31143 -22.97412 -21.59540 -21.32192 -19.65120 -19.11909 -17.73343 -17.46896 -17.18274 -16.55006 -16.47217 -16.36747 -15.81114 -15.60610 -15.15626 -14.93416 -14.81623 -14.75622 -14.18185 -13.94122 -13.83903 -13.43384 -13.28973 -13.03134 -12.59738 -12.53162 -12.49024 -12.42114 -12.36419 -11.99766 -11.89362 -11.82758 -11.60458 -11.22011 -11.19077 -11.12321 -10.85701 -10.46671 -10.45918 -10.28083 -9.86228 -9.79583 -9.76137 -9.59718 -9.45139 -8.65086 -8.63962 -7.11957 -6.07109 -3.43557 2.51343 2.57618 3.21918 3.42058 3.44265 3.51861 3.58246 3.90711 4.10613 4.36616 4.41320 4.43417 4.55508 4.63821 4.65479 4.69154 4.78970 4.86794 4.99638 5.01169 5.04485 5.11142 5.21941 5.25582 5.30831 5.33163 5.41807 5.47676 5.56545 5.62342 5.63404 5.74255 5.78452 5.88242 6.00515 6.06313 6.11149 6.22392 6.29755 6.33683 6.39219 6.40979 6.63240 6.77466 7.46821 7.60897 7.74578 8.13499 8.18442 8.75493 9.57076 9.93184 11.08232 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002480 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.828311 B =11288.057651 C =11739.210042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.026 3.974 3 Si 0.876 3.124 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.270 1.270 7 C -0.260 4.260 8 H 0.089 0.911 9 N -0.604 5.604 10 C 0.112 3.888 11 C 0.044 3.956 12 O -0.369 6.369 13 C 0.095 3.905 14 C -0.145 4.145 15 C 0.101 3.899 16 N -0.612 5.612 17 C 0.530 3.470 18 O -0.522 6.522 19 C 0.047 3.953 20 O -0.346 6.346 21 C 0.053 3.947 22 H 0.081 0.919 23 C -0.155 4.155 24 C 0.045 3.955 25 O -0.368 6.368 26 C 0.024 3.976 27 C 0.123 3.877 28 C 0.110 3.890 29 H 0.264 0.736 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.192 -8.189 -18.380 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.174 4.174 3 Si 0.706 3.294 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.107 0.893 9 N -0.329 5.329 10 C -0.014 4.014 11 C -0.034 4.034 12 O -0.288 6.288 13 C 0.052 3.948 14 C -0.183 4.183 15 C -0.022 4.022 16 N -0.348 5.348 17 C 0.317 3.683 18 O -0.397 6.397 19 C -0.032 4.032 20 O -0.264 6.264 21 C -0.006 4.006 22 H 0.099 0.901 23 C -0.193 4.193 24 C -0.032 4.032 25 O -0.286 6.286 26 C -0.053 4.053 27 C 0.000 4.000 28 C -0.016 4.016 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.103 0.897 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.816 -7.227 -18.402 23.561 hybrid contribution -0.174 0.391 0.194 0.470 sum 12.642 -6.836 -18.208 23.197 Atomic orbital electron populations 1.69826 1.05636 1.26723 1.52486 1.25218 0.95210 0.97484 0.99452 0.87092 0.80125 0.84781 0.77380 1.21402 1.22835 1.19483 1.18871 0.84537 0.94975 1.40432 0.89331 1.44359 1.09137 1.30922 1.48476 1.21625 0.93150 0.92402 0.94206 1.23144 0.97739 0.89778 0.92715 1.87693 1.33594 1.40047 1.67454 1.22273 0.89142 0.89995 0.93346 1.23058 0.98726 1.03826 0.92652 1.22170 0.89504 0.91082 0.99446 1.48435 1.33141 1.36938 1.16258 1.19736 0.80466 0.84210 0.83898 1.90740 1.36815 1.32040 1.80118 1.22260 0.92894 0.97977 0.90110 1.88138 1.52971 1.59574 1.25731 1.23612 0.96529 0.95677 0.84754 0.90137 1.23092 0.96342 1.02061 0.97788 1.23421 0.89993 0.93794 0.95970 1.89188 1.24005 1.36320 1.79108 1.23978 0.92660 0.95045 0.93653 1.22124 1.02451 0.94428 0.80949 1.21666 0.97389 0.92412 0.90110 0.92594 0.95021 0.90858 0.89407 0.92931 0.88922 0.88997 0.91420 0.91307 0.90102 0.90245 0.88818 0.89451 0.88714 0.92100 0.91310 0.88379 0.89724 0.89346 0.89655 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.97 55.49 0.78 -25.66 16 2 C 0.03 0.71 5.24 -17.43 -0.09 0.62 16 3 Si 0.88 21.54 24.28 -169.99 -4.13 17.41 16 4 H -0.29 -6.69 6.55 56.52 0.37 -6.32 16 5 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.63 6.63 56.52 0.37 -6.25 16 7 C -0.26 -6.81 10.10 -15.06 -0.15 -6.96 16 8 H 0.09 2.47 8.05 -52.49 -0.42 2.04 16 9 N -0.60 -13.45 2.77 -172.51 -0.48 -13.93 16 10 C 0.11 2.06 6.72 -3.53 -0.02 2.04 16 11 C 0.04 0.68 6.78 37.30 0.25 0.93 16 12 O -0.37 -6.36 10.29 -35.22 -0.36 -6.72 16 13 C 0.09 1.63 0.84 -89.88 -0.08 1.55 16 14 C -0.14 -2.16 5.86 -25.25 -0.15 -2.31 16 15 C 0.10 1.19 6.50 -2.96 -0.02 1.18 16 16 N -0.61 -8.87 3.33 -170.78 -0.57 -9.44 16 17 C 0.53 8.03 7.93 -10.99 -0.09 7.94 16 18 O -0.52 -10.20 16.77 -14.35 -0.24 -10.44 16 19 C 0.05 0.51 5.45 36.00 0.20 0.70 16 20 O -0.35 -4.31 9.51 -55.14 -0.52 -4.84 16 21 C 0.05 0.45 3.61 -25.16 -0.09 0.36 16 22 H 0.08 0.47 7.82 -51.93 -0.41 0.06 16 23 C -0.16 -1.16 6.90 -25.16 -0.17 -1.33 16 24 C 0.05 0.34 7.63 37.93 0.29 0.63 16 25 O -0.37 -4.03 11.65 -35.23 -0.41 -4.45 16 26 C 0.02 0.20 7.38 37.94 0.28 0.48 16 27 C 0.12 2.01 6.09 -2.88 -0.02 1.99 16 28 C 0.11 2.29 3.01 -4.13 -0.01 2.28 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.05 0.78 6.22 -51.93 -0.32 0.46 16 34 H 0.09 1.38 6.07 -51.93 -0.32 1.06 16 35 H 0.09 1.47 7.81 -51.93 -0.41 1.07 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 41 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 46 H 0.08 1.36 7.99 -51.93 -0.42 0.94 16 47 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 48 H 0.09 1.89 4.44 -51.93 -0.23 1.66 16 49 H 0.04 0.76 6.85 -51.93 -0.36 0.41 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -34.35 379.94 -8.05 -42.39 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -7.96 Total: -0.16 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: 0.13 Total: 10.10 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.27 Total: -49.02 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -1.54 Total: -26.45 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.13 Total: 17.41 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.35 -8.05 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972378682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.670 kcal (2) G-P(sol) polarization free energy of solvation -34.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds