Wall clock time and date at job start Sat Apr 11 2020 06:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99872 * 2 1 4 4 H 1.48490 * 109.47132 * 271.13716 * 3 2 1 5 5 H 1.48503 * 109.47103 * 31.13795 * 3 2 1 6 6 H 1.48499 * 109.47088 * 151.13412 * 3 2 1 7 7 C 1.38812 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99771 * 339.26116 * 7 2 1 9 9 N 1.36932 * 119.99636 * 158.98317 * 7 2 1 10 10 C 1.47162 * 121.07756 * 154.68445 * 9 7 2 11 11 C 1.53283 * 108.57927 * 128.79347 * 10 9 7 12 12 O 1.43120 * 109.23150 * 52.97272 * 11 10 9 13 13 C 1.41895 * 114.35968 * 299.10915 * 12 11 10 14 14 C 1.54364 * 110.71575 * 296.75779 * 13 12 11 15 15 C 1.54464 * 102.87322 * 276.29588 * 14 13 12 16 16 N 1.47079 * 107.29039 * 338.49950 * 15 14 13 17 17 C 1.34779 * 125.62796 * 178.98421 * 16 15 14 18 18 O 1.21282 * 120.00186 * 180.02562 * 17 16 15 19 19 C 1.50698 * 119.99937 * 0.02827 * 17 16 15 20 20 O 1.42899 * 109.47190 * 179.97438 * 19 17 16 21 21 C 1.42905 * 113.99739 * 179.97438 * 20 19 17 22 22 H 1.08996 * 110.46094 * 332.60888 * 21 20 19 23 23 C 1.54510 * 110.50940 * 209.99755 * 21 20 19 24 24 C 1.54477 * 104.06593 * 241.35589 * 23 21 20 25 25 O 1.44425 * 104.80187 * 23.98399 * 24 23 21 26 26 C 1.44429 * 105.27522 * 319.48516 * 25 24 23 27 27 C 1.47578 * 108.74502 * 359.02280 * 16 15 14 28 28 C 1.47338 * 121.08226 * 334.40107 * 9 7 2 29 29 H 0.97000 * 119.99681 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.62021 * 248.51765 * 10 9 7 31 31 H 1.08997 * 109.61944 * 8.88225 * 10 9 7 32 32 H 1.08997 * 109.50994 * 172.89958 * 11 10 9 33 33 H 1.09000 * 109.50709 * 293.03979 * 11 10 9 34 34 H 1.09000 * 110.73538 * 34.64038 * 14 13 12 35 35 H 1.09004 * 110.73625 * 157.94690 * 14 13 12 36 36 H 1.08998 * 109.87815 * 97.92530 * 15 14 13 37 37 H 1.08990 * 109.87739 * 219.07453 * 15 14 13 38 38 H 1.09006 * 109.47175 * 299.99465 * 19 17 16 39 39 H 1.09005 * 109.47378 * 59.99582 * 19 17 16 40 40 H 1.09001 * 110.50889 * 0.02562 * 23 21 20 41 41 H 1.09002 * 110.50940 * 122.57699 * 23 21 20 42 42 H 1.09007 * 110.37259 * 142.80776 * 24 23 21 43 43 H 1.08990 * 110.37661 * 265.03840 * 24 23 21 44 44 H 1.09002 * 110.37291 * 281.68406 * 26 25 24 45 45 H 1.08997 * 110.37639 * 159.34199 * 26 25 24 46 46 H 1.08995 * 110.37087 * 264.47474 * 27 16 15 47 47 H 1.08998 * 110.37775 * 142.13168 * 27 16 15 48 48 H 1.09006 * 109.67560 * 348.91444 * 28 9 7 49 49 H 1.09002 * 109.67965 * 109.46157 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4737 2.0603 -1.3997 5 1 1.4599 2.6457 0.7240 6 1 3.5596 1.4334 0.6759 7 6 2.0103 -1.2022 0.0005 8 1 1.5228 -2.1070 0.3321 9 7 3.3113 -1.2417 -0.4248 10 6 4.2334 -2.2871 0.0471 11 6 4.9014 -2.9351 -1.1708 12 8 5.4849 -1.9146 -1.9870 13 6 4.5566 -0.9691 -2.4947 14 6 3.5391 -1.6525 -3.4331 15 6 4.2882 -1.6911 -4.7834 16 7 5.3322 -0.6563 -4.7338 17 6 6.2163 -0.3854 -5.7144 18 8 7.0378 0.4941 -5.5643 19 6 6.1840 -1.1753 -6.9974 20 8 7.2106 -0.7042 -7.8728 21 6 7.2672 -1.3909 -9.1247 22 1 6.8852 -2.4064 -9.0198 23 6 8.7139 -1.4099 -9.6668 24 6 8.6226 -0.6475 -11.0072 25 8 7.4580 0.1960 -10.8734 26 6 6.4729 -0.6192 -10.2017 27 6 5.2525 0.0359 -3.4329 28 6 3.8318 -0.2427 -1.3744 29 1 -0.4850 0.8401 -0.0004 30 1 4.9942 -1.8419 0.6882 31 1 3.6779 -3.0396 0.6068 32 1 5.6784 -3.6228 -0.8368 33 1 4.1550 -3.4808 -1.7480 34 1 3.3133 -2.6615 -3.0882 35 1 2.6288 -1.0584 -3.5136 36 1 4.7440 -2.6709 -4.9265 37 1 3.5953 -1.4800 -5.5977 38 1 6.3485 -2.2304 -6.7787 39 1 5.2129 -1.0506 -7.4765 40 1 9.3860 -0.8958 -8.9796 41 1 9.0473 -2.4348 -9.8299 42 1 9.5151 -0.0406 -11.1602 43 1 8.4939 -1.3467 -11.8334 44 1 6.0125 -1.3140 -10.9042 45 1 5.7140 0.0093 -9.7359 46 1 4.6583 0.9453 -3.5227 47 1 6.2517 0.2693 -3.0653 48 1 3.0058 0.3360 -1.7879 49 1 4.5271 0.4229 -0.8628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972378682.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:05 Heat of formation + Delta-G solvation = -142.941918 kcal Electronic energy + Delta-G solvation = -30994.984689 eV Core-core repulsion = 26729.990909 eV Total energy + Delta-G solvation = -4264.993780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 340.188 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.77230 -40.76050 -40.08513 -38.03324 -37.45897 -36.40794 -33.65181 -33.32533 -32.41984 -31.04935 -30.12243 -29.53431 -28.79790 -26.83416 -25.44354 -24.24249 -23.78650 -22.89248 -22.18031 -20.88562 -20.42084 -19.06348 -18.59441 -18.25657 -17.86360 -17.34930 -17.25106 -17.02184 -16.51550 -16.37772 -16.26703 -15.90039 -15.74131 -15.71210 -15.51103 -15.21660 -14.50364 -14.37836 -14.24237 -13.93443 -13.85151 -13.69289 -13.61646 -13.45876 -13.13919 -12.94457 -12.79169 -12.67887 -12.41909 -12.39567 -12.28309 -12.21876 -11.98425 -11.75508 -11.61133 -11.32612 -11.09642 -11.04411 -10.96406 -10.49138 -10.42656 -9.78379 -8.98014 -8.20125 -5.51240 1.23277 1.38446 1.43973 1.47479 1.54290 2.35539 2.58761 2.76078 2.90622 3.01397 3.20029 3.40681 3.48986 3.59505 3.79528 3.80955 3.86706 4.06735 4.11315 4.11842 4.16600 4.21320 4.25855 4.31113 4.41729 4.42230 4.46232 4.49931 4.51176 4.58008 4.63889 4.66982 4.74161 4.76678 4.80977 4.88747 4.91966 4.96700 5.03934 5.07452 5.13367 5.24013 5.74113 5.77502 6.08752 6.12115 6.27358 6.41006 6.79922 7.02623 7.53506 7.95253 8.98852 Molecular weight = 340.19amu Principal moments of inertia in cm(-1) A = 0.021619 B = 0.002480 C = 0.002385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.828311 B =11288.057651 C =11739.210042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.024 4.024 3 Si 0.926 3.074 4 H -0.272 1.272 5 H -0.311 1.311 6 H -0.272 1.272 7 C -0.239 4.239 8 H 0.066 0.934 9 N -0.616 5.616 10 C 0.104 3.896 11 C 0.051 3.949 12 O -0.374 6.374 13 C 0.100 3.900 14 C -0.142 4.142 15 C 0.106 3.894 16 N -0.610 5.610 17 C 0.522 3.478 18 O -0.579 6.579 19 C 0.054 3.946 20 O -0.385 6.385 21 C 0.048 3.952 22 H 0.117 0.883 23 C -0.155 4.155 24 C 0.040 3.960 25 O -0.407 6.407 26 C 0.019 3.981 27 C 0.122 3.878 28 C 0.108 3.892 29 H 0.262 0.738 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.124 0.876 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.110 0.890 40 H 0.068 0.932 41 H 0.117 0.883 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.277 -10.788 -20.659 26.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.220 4.220 3 Si 0.755 3.245 4 H -0.198 1.198 5 H -0.239 1.239 6 H -0.197 1.197 7 C -0.368 4.368 8 H 0.084 0.916 9 N -0.341 5.341 10 C -0.020 4.020 11 C -0.026 4.026 12 O -0.293 6.293 13 C 0.058 3.942 14 C -0.180 4.180 15 C -0.015 4.015 16 N -0.345 5.345 17 C 0.312 3.688 18 O -0.458 6.458 19 C -0.025 4.025 20 O -0.304 6.304 21 C -0.010 4.010 22 H 0.135 0.865 23 C -0.192 4.192 24 C -0.036 4.036 25 O -0.326 6.326 26 C -0.057 4.057 27 C -0.001 4.001 28 C -0.018 4.018 29 H 0.071 0.929 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.087 0.913 41 H 0.135 0.865 42 H 0.112 0.888 43 H 0.104 0.896 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 13.928 -9.869 -20.701 26.832 hybrid contribution -0.467 1.123 0.961 1.550 sum 13.461 -8.746 -19.740 25.444 Atomic orbital electron populations 1.69922 1.06933 1.27082 1.55443 1.25679 0.95631 0.99982 1.00663 0.86276 0.78549 0.81719 0.77906 1.19846 1.23950 1.19703 1.18829 0.85980 0.93840 1.38162 0.91586 1.44469 1.08519 1.31983 1.49163 1.21864 0.92602 0.91612 0.95967 1.23218 0.98940 0.89396 0.91059 1.87705 1.33807 1.40207 1.67583 1.22026 0.89588 0.90190 0.92366 1.22994 0.97781 1.03284 0.93977 1.22332 0.89172 0.91696 0.98328 1.48498 1.33616 1.37109 1.15262 1.20682 0.79270 0.83762 0.85091 1.90712 1.39116 1.34675 1.81307 1.22354 0.94084 0.98362 0.87705 1.88104 1.53751 1.61158 1.27366 1.23894 0.97036 0.96983 0.83068 0.86533 1.23142 0.95650 1.03413 0.97026 1.23615 0.89079 0.93970 0.96927 1.89139 1.25537 1.38364 1.79579 1.24143 0.92149 0.95162 0.94275 1.21947 1.01343 0.94492 0.82328 1.21617 0.96789 0.92361 0.90986 0.92881 0.95093 0.90295 0.85860 0.91844 0.88511 0.90593 0.88399 0.88166 0.86728 0.87195 0.91276 0.86476 0.88810 0.89578 0.88408 0.89548 0.90140 0.90928 0.91398 0.95833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.79 13.97 21.65 0.30 -56.49 16 2 C -0.02 -1.34 5.24 84.86 0.44 -0.89 16 3 Si 0.93 45.44 24.28 68.60 1.67 47.11 16 4 H -0.27 -12.52 6.55 99.48 0.65 -11.87 16 5 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 6 H -0.27 -13.25 6.63 99.48 0.66 -12.59 16 7 C -0.24 -12.62 10.10 84.03 0.85 -11.77 16 8 H 0.07 3.75 8.05 -2.91 -0.02 3.72 16 9 N -0.62 -27.13 2.77 -699.69 -1.94 -29.07 16 10 C 0.10 3.68 6.72 86.35 0.58 4.26 16 11 C 0.05 1.41 6.78 72.08 0.49 1.90 16 12 O -0.37 -11.97 10.29 -148.95 -1.53 -13.50 16 13 C 0.10 3.31 0.84 -10.32 -0.01 3.30 16 14 C -0.14 -3.91 5.86 31.56 0.18 -3.72 16 15 C 0.11 2.08 6.50 86.77 0.56 2.65 16 16 N -0.61 -16.28 3.33 -812.61 -2.71 -18.99 16 17 C 0.52 14.90 7.93 87.66 0.69 15.59 16 18 O -0.58 -22.77 16.77 16.00 0.27 -22.51 16 19 C 0.05 0.96 5.45 71.24 0.39 1.35 16 20 O -0.38 -8.80 9.51 -129.94 -1.24 -10.04 16 21 C 0.05 0.66 3.61 31.61 0.11 0.77 16 22 H 0.12 0.74 7.82 -2.39 -0.02 0.72 16 23 C -0.15 -1.96 6.90 31.61 0.22 -1.75 16 24 C 0.04 0.53 7.63 72.48 0.55 1.08 16 25 O -0.41 -8.50 11.65 -148.98 -1.74 -10.23 16 26 C 0.02 0.28 7.38 72.49 0.53 0.82 16 27 C 0.12 3.93 6.09 86.54 0.53 4.46 16 28 C 0.11 4.46 3.01 85.86 0.26 4.72 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.08 2.67 7.96 -2.39 -0.02 2.65 16 32 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 33 H 0.06 1.66 6.22 -2.39 -0.01 1.65 16 34 H 0.10 2.58 6.07 -2.39 -0.01 2.56 16 35 H 0.08 2.33 7.81 -2.38 -0.02 2.32 16 36 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.12 1.27 8.11 -2.38 -0.02 1.25 16 39 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 1.22 8.00 -2.39 -0.02 1.20 16 41 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 1.41 8.09 -2.39 -0.02 1.39 16 46 H 0.08 2.61 7.99 -2.39 -0.02 2.59 16 47 H 0.07 2.54 8.05 -2.39 -0.02 2.52 16 48 H 0.07 3.02 4.44 -2.38 -0.01 3.01 16 49 H 0.02 1.03 6.85 -2.39 -0.02 1.01 16 Total: -1.00 -78.71 379.94 0.31 -78.40 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.84 Total: 12.56 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: 6.39 Total: 22.77 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -4.35 Total: -104.55 kcal Atomic # 8 Polarization: -52.04 SS G_CDS: -4.24 Total: -56.28 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.67 Total: 47.11 kcal Total: -78.71 0.31 -78.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972378682.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.543 kcal (2) G-P(sol) polarization free energy of solvation -78.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds