Wall clock time and date at job start Sat Apr 11 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99934 * 2 1 4 4 H 1.08000 * 120.00490 * 139.93253 * 3 2 1 5 5 C 1.38808 * 120.00220 * 319.92933 * 3 2 1 6 6 N 1.31620 * 120.00759 * 167.39505 * 5 3 2 7 7 Si 1.86808 * 119.99828 * 347.39600 * 5 3 2 8 8 H 1.48506 * 109.46804 * 91.97255 * 7 5 3 9 9 H 1.48491 * 109.47442 * 211.96995 * 7 5 3 10 10 H 1.48499 * 109.47123 * 331.97474 * 7 5 3 11 11 C 1.46498 * 120.00007 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.78032 * 183.24198 * 11 2 1 13 13 C 1.55160 * 110.71804 * 60.00793 * 11 2 1 14 14 C 1.54906 * 101.61313 * 206.15132 * 13 11 2 15 15 N 1.47429 * 104.83589 * 36.98971 * 14 13 11 16 16 C 1.34771 * 125.65007 * 155.90729 * 15 14 13 17 17 O 1.21582 * 120.00276 * 174.36479 * 16 15 14 18 18 C 1.47607 * 119.99984 * 354.35902 * 16 15 14 19 19 C 1.39628 * 120.18925 * 52.31843 * 18 16 15 20 20 C 1.37847 * 119.91855 * 179.97438 * 19 18 16 21 21 C 1.38521 * 120.31026 * 359.97005 * 20 19 18 22 22 C 1.38084 * 120.38521 * 0.02715 * 21 20 19 23 23 C 1.38754 * 120.07674 * 359.74341 * 22 21 20 24 24 N 1.39698 * 120.15882 * 180.25411 * 23 22 21 25 25 C 1.35863 * 126.10134 * 6.76932 * 24 23 22 26 26 C 1.35274 * 107.61445 * 179.97438 * 25 24 23 27 27 C 1.39968 * 107.97024 * 0.02562 * 26 25 24 28 28 N 1.30823 * 108.36654 * 359.75439 * 27 26 25 29 29 C 1.47023 * 108.69993 * 335.87085 * 15 14 13 30 30 H 1.08997 * 109.47296 * 264.74830 * 1 2 3 31 31 H 1.09000 * 109.46824 * 24.74991 * 1 2 3 32 32 H 1.09005 * 109.46667 * 144.74851 * 1 2 3 33 33 H 0.96998 * 120.00393 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00633 * 88.05688 * 13 11 2 35 35 H 1.08994 * 111.00278 * 324.24211 * 13 11 2 36 36 H 1.09005 * 110.36633 * 155.82950 * 14 13 11 37 37 H 1.08998 * 110.37252 * 278.04046 * 14 13 11 38 38 H 1.08004 * 120.04237 * 359.94813 * 19 18 16 39 39 H 1.08007 * 119.84537 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.80992 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.96200 * 180.02562 * 22 21 20 42 42 H 1.08003 * 126.19233 * 359.94776 * 25 24 23 43 43 H 1.07999 * 126.02130 * 180.02562 * 26 25 24 44 44 H 1.07997 * 125.81866 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.88418 * 120.47938 * 29 15 14 46 46 H 1.09001 * 109.88167 * 241.63962 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0396 1.2957 0.6020 5 6 1.7001 2.2469 -0.7738 6 7 2.1984 3.4516 -0.5924 7 14 0.3875 1.9652 -2.0729 8 1 -0.9535 2.2062 -1.4820 9 1 0.6041 2.8997 -3.2063 10 1 0.4682 0.5657 -2.5628 11 6 2.1975 -1.2687 0.0006 12 1 3.2721 -1.0948 0.0581 13 6 1.8437 -2.1074 -1.2560 14 6 2.1166 -3.5480 -0.7563 15 7 1.6773 -3.5490 0.6510 16 6 1.2939 -4.6334 1.3534 17 8 1.0482 -4.5335 2.5400 18 6 1.1720 -5.9424 0.6822 19 6 2.2346 -6.4474 -0.0698 20 6 2.1149 -7.6707 -0.6939 21 6 0.9448 -8.4030 -0.5783 22 6 -0.1139 -7.9156 0.1622 23 6 -0.0091 -6.6883 0.8010 24 7 -1.0771 -6.1961 1.5550 25 6 -2.2215 -6.8647 1.8536 26 6 -2.9941 -6.0414 2.5987 27 6 -2.3058 -4.8336 2.7617 28 7 -1.1574 -4.9267 2.1422 29 6 1.7277 -2.1712 1.1615 30 1 -0.3634 -0.0941 1.0233 31 1 -0.3633 0.9333 -0.4302 32 1 -0.3633 -0.8393 -0.5932 33 1 1.8839 4.1930 -1.1329 34 1 2.4960 -1.8535 -2.0915 35 1 0.7960 -1.9802 -1.5283 36 1 1.5364 -4.2666 -1.3353 37 1 3.1799 -3.7780 -0.8237 38 1 3.1490 -5.8802 -0.1627 39 1 2.9377 -8.0605 -1.2749 40 1 0.8599 -9.3606 -1.0703 41 1 -1.0230 -8.4925 0.2480 42 1 -2.4697 -7.8712 1.5507 43 1 -3.9703 -6.2747 2.9975 44 1 -2.6604 -3.9731 3.3096 45 1 0.7363 -1.8620 1.4927 46 1 2.4337 -2.1082 1.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972421897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:19 Heat of formation + Delta-G solvation = 138.599755 kcal Electronic energy + Delta-G solvation = -30000.963687 eV Core-core repulsion = 26087.780141 eV Total energy + Delta-G solvation = -3913.183546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66319 -40.04770 -38.73965 -37.26314 -34.92983 -33.73252 -32.14061 -31.48413 -30.28456 -30.00583 -29.20829 -28.16126 -26.21630 -24.76934 -23.74137 -23.10230 -22.32724 -21.08918 -20.73629 -19.63518 -19.24284 -18.21499 -17.21478 -16.99570 -16.21507 -15.96073 -15.48672 -15.43755 -15.24122 -14.91847 -14.53118 -14.12603 -14.08626 -13.72947 -13.52569 -13.19617 -13.05092 -12.89255 -12.87546 -12.70155 -12.43782 -12.14827 -12.03718 -11.79007 -11.76456 -11.41413 -10.95205 -10.84664 -10.58192 -10.52447 -10.41372 -10.18418 -9.88775 -9.67626 -9.55703 -9.31737 -9.23233 -8.60520 -8.27408 -8.22015 -6.85545 -5.99361 -3.51339 0.46478 0.76856 2.02558 2.24079 2.71822 2.94615 3.16008 3.28606 3.42931 3.47678 3.53967 4.16580 4.38003 4.47808 4.55854 4.58041 4.65493 4.86773 4.92192 4.97118 5.10796 5.13103 5.22477 5.32938 5.40668 5.44928 5.49660 5.52293 5.69760 5.75819 5.79080 5.87360 5.90275 5.94881 6.02282 6.17119 6.28568 6.29269 6.38406 6.41486 6.50994 6.59680 6.63779 6.74421 6.83961 6.96533 7.57104 7.81824 8.03757 8.35245 8.48439 8.91718 9.65339 10.05437 11.15308 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.003400 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.440631 B = 8232.669865 C = 9145.729303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.598 5.598 3 C -0.272 4.272 4 H 0.082 0.918 5 C 0.034 3.966 6 N -0.907 5.907 7 Si 0.898 3.102 8 H -0.287 1.287 9 H -0.304 1.304 10 H -0.269 1.269 11 C 0.174 3.826 12 H 0.088 0.912 13 C -0.156 4.156 14 C 0.100 3.900 15 N -0.608 5.608 16 C 0.578 3.422 17 O -0.505 6.505 18 C -0.125 4.125 19 C -0.065 4.065 20 C -0.137 4.137 21 C -0.077 4.077 22 C -0.151 4.151 23 C 0.206 3.794 24 N -0.333 5.333 25 C 0.040 3.960 26 C -0.252 4.252 27 C 0.044 3.956 28 N -0.233 5.233 29 C 0.095 3.905 30 H 0.018 0.982 31 H 0.047 0.953 32 H 0.030 0.970 33 H 0.264 0.736 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.175 0.825 43 H 0.153 0.847 44 H 0.187 0.813 45 H 0.071 0.929 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.473 -26.695 -1.284 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.320 5.320 3 C -0.400 4.400 4 H 0.099 0.901 5 C -0.166 4.166 6 N -0.548 5.548 7 Si 0.730 3.270 8 H -0.216 1.216 9 H -0.233 1.233 10 H -0.194 1.194 11 C 0.065 3.935 12 H 0.107 0.893 13 C -0.196 4.196 14 C -0.023 4.023 15 N -0.343 5.343 16 C 0.364 3.636 17 O -0.379 6.379 18 C -0.131 4.131 19 C -0.084 4.084 20 C -0.155 4.155 21 C -0.095 4.095 22 C -0.172 4.172 23 C 0.112 3.888 24 N -0.110 5.110 25 C -0.100 4.100 26 C -0.281 4.281 27 C -0.145 4.145 28 N -0.050 5.050 29 C -0.028 4.028 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.192 0.808 43 H 0.170 0.830 44 H 0.204 0.796 45 H 0.089 0.911 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.517 -25.894 -0.934 26.302 hybrid contribution -1.699 -0.505 -0.544 1.854 sum -6.215 -26.400 -1.478 27.162 Atomic orbital electron populations 1.21356 0.85127 0.98990 0.98264 1.43962 1.00364 1.01484 1.86227 1.18835 1.11101 0.87687 1.22406 0.90069 1.25519 0.98255 0.95662 0.97204 1.69776 1.44667 0.99377 1.41021 0.86662 0.81014 0.77678 0.81628 1.21562 1.23300 1.19432 1.21474 0.96811 0.85192 0.90032 0.89341 1.23388 1.02667 0.93042 1.00503 1.22372 0.98981 0.98956 0.82004 1.48279 1.65657 1.07487 1.12879 1.17342 0.77585 0.82388 0.86251 1.90788 1.47937 1.84626 1.14558 1.19719 0.94040 0.96958 1.02334 1.21286 0.97615 0.95830 0.93675 1.21144 0.98475 0.94856 1.01051 1.21082 0.92229 0.99604 0.96616 1.20744 1.01078 0.94592 1.00781 1.17405 0.85604 0.93141 0.92695 1.46061 1.12919 1.12079 1.39932 1.22692 0.87174 0.99506 1.00660 1.21613 1.03176 0.94856 1.08423 1.24254 0.91684 0.99117 0.99431 1.78182 1.18478 0.95827 1.12472 1.22575 1.02307 0.79605 0.98359 0.96382 0.93473 0.95169 0.92601 0.90100 0.90998 0.91557 0.91528 0.84474 0.84797 0.84688 0.84822 0.80774 0.82962 0.79601 0.91083 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 8.01 59.85 0.48 2.87 16 2 N -0.60 -14.10 2.51 -171.36 -0.43 -14.53 16 3 C -0.27 -7.52 9.93 -15.06 -0.15 -7.67 16 4 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16 5 C 0.03 0.97 5.41 -17.43 -0.09 0.88 16 6 N -0.91 -27.61 13.97 55.49 0.78 -26.84 16 7 Si 0.90 22.42 24.66 -169.99 -4.19 18.23 16 8 H -0.29 -7.04 6.68 56.52 0.38 -6.67 16 9 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 10 H -0.27 -6.46 7.01 56.52 0.40 -6.07 16 11 C 0.17 3.38 3.44 -66.07 -0.23 3.15 16 12 H 0.09 1.71 7.95 -51.93 -0.41 1.30 16 13 C -0.16 -2.57 6.64 -24.58 -0.16 -2.74 16 14 C 0.10 1.37 5.54 -2.53 -0.01 1.36 16 15 N -0.61 -10.09 3.33 -171.69 -0.57 -10.66 16 16 C 0.58 10.01 6.09 -12.44 -0.08 9.94 16 17 O -0.50 -10.49 14.62 5.29 0.08 -10.41 16 18 C -0.13 -1.74 5.11 -104.82 -0.54 -2.27 16 19 C -0.07 -0.67 8.24 -39.21 -0.32 -0.99 16 20 C -0.14 -1.04 10.02 -39.62 -0.40 -1.44 16 21 C -0.08 -0.54 10.03 -39.53 -0.40 -0.94 16 22 C -0.15 -1.34 9.45 -39.45 -0.37 -1.71 16 23 C 0.21 2.68 6.68 -83.35 -0.56 2.12 16 24 N -0.33 -4.74 3.77 -10.37 -0.04 -4.78 16 25 C 0.04 0.42 10.81 -16.82 -0.18 0.24 16 26 C -0.25 -2.71 10.80 -39.99 -0.43 -3.14 16 27 C 0.04 0.60 12.02 -17.33 -0.21 0.39 16 28 N -0.23 -3.94 8.10 30.64 0.25 -3.70 16 29 C 0.10 1.78 6.50 -3.04 -0.02 1.76 16 30 H 0.02 0.39 7.64 -51.93 -0.40 0.00 16 31 H 0.05 1.13 3.06 -51.93 -0.16 0.97 16 32 H 0.03 0.62 6.37 -51.93 -0.33 0.29 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.29 6.35 -51.93 -0.33 0.96 16 36 H 0.07 0.83 7.14 -51.93 -0.37 0.46 16 37 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 38 H 0.14 1.24 7.07 -52.48 -0.37 0.87 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.82 6.79 -52.48 -0.36 0.46 16 42 H 0.18 1.10 7.10 -52.48 -0.37 0.73 16 43 H 0.15 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.07 1.47 6.58 -51.93 -0.34 1.13 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -36.04 365.11 -8.26 -44.30 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.97 Total: 1.07 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -3.67 Total: 1.82 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.02 Total: -60.51 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.41 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.19 Total: 18.23 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.04 -8.26 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972421897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.903 kcal (2) G-P(sol) polarization free energy of solvation -36.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds