Wall clock time and date at job start Sat Apr 11 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36933 * 119.99934 * 2 1 4 4 H 1.08000 * 120.00490 * 139.93253 * 3 2 1 5 5 C 1.38808 * 120.00220 * 319.92933 * 3 2 1 6 6 N 1.31620 * 120.00759 * 167.39505 * 5 3 2 7 7 Si 1.86808 * 119.99828 * 347.39600 * 5 3 2 8 8 H 1.48506 * 109.46804 * 91.97255 * 7 5 3 9 9 H 1.48491 * 109.47442 * 211.96995 * 7 5 3 10 10 H 1.48499 * 109.47123 * 331.97474 * 7 5 3 11 11 C 1.46498 * 120.00007 * 179.97438 * 2 1 3 12 12 H 1.09006 * 110.78032 * 183.24198 * 11 2 1 13 13 C 1.55160 * 110.71804 * 60.00793 * 11 2 1 14 14 C 1.54906 * 101.61313 * 206.15132 * 13 11 2 15 15 N 1.47429 * 104.83589 * 36.98971 * 14 13 11 16 16 C 1.34771 * 125.65007 * 155.90729 * 15 14 13 17 17 O 1.21582 * 120.00276 * 174.36479 * 16 15 14 18 18 C 1.47607 * 119.99984 * 354.35902 * 16 15 14 19 19 C 1.39628 * 120.18925 * 52.31843 * 18 16 15 20 20 C 1.37847 * 119.91855 * 179.97438 * 19 18 16 21 21 C 1.38521 * 120.31026 * 359.97005 * 20 19 18 22 22 C 1.38084 * 120.38521 * 0.02715 * 21 20 19 23 23 C 1.38754 * 120.07674 * 359.74341 * 22 21 20 24 24 N 1.39698 * 120.15882 * 180.25411 * 23 22 21 25 25 C 1.35863 * 126.10134 * 6.76932 * 24 23 22 26 26 C 1.35274 * 107.61445 * 179.97438 * 25 24 23 27 27 C 1.39968 * 107.97024 * 0.02562 * 26 25 24 28 28 N 1.30823 * 108.36654 * 359.75439 * 27 26 25 29 29 C 1.47023 * 108.69993 * 335.87085 * 15 14 13 30 30 H 1.08997 * 109.47296 * 264.74830 * 1 2 3 31 31 H 1.09000 * 109.46824 * 24.74991 * 1 2 3 32 32 H 1.09005 * 109.46667 * 144.74851 * 1 2 3 33 33 H 0.96998 * 120.00393 * 180.02562 * 6 5 3 34 34 H 1.08997 * 111.00633 * 88.05688 * 13 11 2 35 35 H 1.08994 * 111.00278 * 324.24211 * 13 11 2 36 36 H 1.09005 * 110.36633 * 155.82950 * 14 13 11 37 37 H 1.08998 * 110.37252 * 278.04046 * 14 13 11 38 38 H 1.08004 * 120.04237 * 359.94813 * 19 18 16 39 39 H 1.08007 * 119.84537 * 180.02562 * 20 19 18 40 40 H 1.07998 * 119.80992 * 180.02562 * 21 20 19 41 41 H 1.08005 * 119.96200 * 180.02562 * 22 21 20 42 42 H 1.08003 * 126.19233 * 359.94776 * 25 24 23 43 43 H 1.07999 * 126.02130 * 180.02562 * 26 25 24 44 44 H 1.07997 * 125.81866 * 180.02562 * 27 26 25 45 45 H 1.08997 * 109.88418 * 120.47938 * 29 15 14 46 46 H 1.09001 * 109.88167 * 241.63962 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.0396 1.2957 0.6020 5 6 1.7001 2.2469 -0.7738 6 7 2.1984 3.4516 -0.5924 7 14 0.3875 1.9652 -2.0729 8 1 -0.9535 2.2062 -1.4820 9 1 0.6041 2.8997 -3.2063 10 1 0.4682 0.5657 -2.5628 11 6 2.1975 -1.2687 0.0006 12 1 3.2721 -1.0948 0.0581 13 6 1.8437 -2.1074 -1.2560 14 6 2.1166 -3.5480 -0.7563 15 7 1.6773 -3.5490 0.6510 16 6 1.2939 -4.6334 1.3534 17 8 1.0482 -4.5335 2.5400 18 6 1.1720 -5.9424 0.6822 19 6 2.2346 -6.4474 -0.0698 20 6 2.1149 -7.6707 -0.6939 21 6 0.9448 -8.4030 -0.5783 22 6 -0.1139 -7.9156 0.1622 23 6 -0.0091 -6.6883 0.8010 24 7 -1.0771 -6.1961 1.5550 25 6 -2.2215 -6.8647 1.8536 26 6 -2.9941 -6.0414 2.5987 27 6 -2.3058 -4.8336 2.7617 28 7 -1.1574 -4.9267 2.1422 29 6 1.7277 -2.1712 1.1615 30 1 -0.3634 -0.0941 1.0233 31 1 -0.3633 0.9333 -0.4302 32 1 -0.3633 -0.8393 -0.5932 33 1 1.8839 4.1930 -1.1329 34 1 2.4960 -1.8535 -2.0915 35 1 0.7960 -1.9802 -1.5283 36 1 1.5364 -4.2666 -1.3353 37 1 3.1799 -3.7780 -0.8237 38 1 3.1490 -5.8802 -0.1627 39 1 2.9377 -8.0605 -1.2749 40 1 0.8599 -9.3606 -1.0703 41 1 -1.0230 -8.4925 0.2480 42 1 -2.4697 -7.8712 1.5507 43 1 -3.9703 -6.2747 2.9975 44 1 -2.6604 -3.9731 3.3096 45 1 0.7363 -1.8620 1.4927 46 1 2.4337 -2.1082 1.9896 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972421897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:18 Heat of formation + Delta-G solvation = 114.940695 kcal Electronic energy + Delta-G solvation = -30001.989621 eV Core-core repulsion = 26087.780141 eV Total energy + Delta-G solvation = -3914.209480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.53631 -41.18848 -39.74924 -38.66674 -36.65036 -34.54324 -33.87132 -32.71230 -31.48135 -31.04753 -30.03559 -29.56939 -28.16616 -26.04007 -24.58388 -24.47205 -23.63214 -22.07872 -21.53337 -20.96132 -20.55876 -19.11658 -19.00880 -18.27095 -17.89863 -17.00527 -16.80015 -16.24365 -16.18778 -16.12770 -15.72779 -15.43765 -15.09875 -14.92622 -14.83442 -14.64110 -14.48757 -14.38492 -14.04525 -13.75308 -13.63933 -13.62607 -13.27106 -13.12455 -12.90328 -12.57955 -12.47575 -12.41431 -12.27851 -12.04950 -11.67575 -11.48033 -11.45617 -11.30041 -10.93412 -10.74294 -10.13172 -10.05019 -9.57155 -9.06765 -8.84503 -8.20866 -5.71518 -0.31511 0.09795 1.24647 1.29519 1.38939 1.44080 1.51465 1.72192 1.87556 2.02341 2.38526 2.72922 3.05988 3.21306 3.37453 3.48279 3.72968 3.81769 3.92284 3.94906 4.09570 4.18618 4.24635 4.26967 4.32257 4.36856 4.40488 4.42139 4.60751 4.61949 4.67337 4.72348 4.76729 4.83415 4.90586 4.95141 4.98648 5.13529 5.17205 5.23723 5.27362 5.34310 5.40758 5.62169 5.76385 5.89596 6.13960 6.20843 6.55691 6.67175 6.88238 7.22834 7.52093 7.96141 8.97349 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.003400 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.440631 B = 8232.669865 C = 9145.729303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.609 5.609 3 C -0.264 4.264 4 H 0.045 0.955 5 C -0.020 4.020 6 N -0.954 5.954 7 Si 0.962 3.038 8 H -0.281 1.281 9 H -0.308 1.308 10 H -0.250 1.250 11 C 0.170 3.830 12 H 0.085 0.915 13 C -0.146 4.146 14 C 0.110 3.890 15 N -0.611 5.611 16 C 0.575 3.425 17 O -0.553 6.553 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.125 4.125 21 C -0.061 4.061 22 C -0.145 4.145 23 C 0.172 3.828 24 N -0.345 5.345 25 C 0.044 3.956 26 C -0.257 4.257 27 C 0.024 3.976 28 N -0.299 5.299 29 C 0.109 3.891 30 H 0.016 0.984 31 H 0.035 0.965 32 H 0.052 0.948 33 H 0.265 0.735 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.164 0.836 42 H 0.221 0.779 43 H 0.183 0.817 44 H 0.193 0.807 45 H 0.044 0.956 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.386 -31.698 -4.194 32.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.332 5.332 3 C -0.394 4.394 4 H 0.062 0.938 5 C -0.217 4.217 6 N -0.598 5.598 7 Si 0.791 3.209 8 H -0.209 1.209 9 H -0.236 1.236 10 H -0.174 1.174 11 C 0.062 3.938 12 H 0.103 0.897 13 C -0.186 4.186 14 C -0.012 4.012 15 N -0.345 5.345 16 C 0.364 3.636 17 O -0.431 6.431 18 C -0.165 4.165 19 C -0.090 4.090 20 C -0.143 4.143 21 C -0.079 4.079 22 C -0.166 4.166 23 C 0.078 3.922 24 N -0.122 5.122 25 C -0.095 4.095 26 C -0.285 4.285 27 C -0.164 4.164 28 N -0.117 5.117 29 C -0.017 4.017 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.079 0.921 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.162 0.838 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.181 0.819 42 H 0.238 0.762 43 H 0.201 0.799 44 H 0.209 0.791 45 H 0.062 0.938 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.424 -30.953 -3.863 31.661 hybrid contribution -1.350 0.914 0.461 1.694 sum -6.774 -30.039 -3.402 30.981 Atomic orbital electron populations 1.21339 0.84409 0.99113 0.98579 1.44000 1.00918 1.01655 1.86670 1.18698 1.09974 0.89483 1.21213 0.93763 1.26172 1.01019 0.95139 0.99332 1.69917 1.47091 1.00386 1.42450 0.85626 0.78396 0.78322 0.78555 1.20868 1.23639 1.17375 1.21542 0.96218 0.83959 0.92064 0.89658 1.23264 1.02237 0.94004 0.99078 1.22496 1.01101 0.97429 0.80203 1.48339 1.65878 1.06303 1.14014 1.18028 0.76025 0.83650 0.85877 1.90742 1.49783 1.85655 1.16882 1.19600 0.96331 0.95650 1.04924 1.21463 0.96792 0.97216 0.93490 1.21590 0.99735 0.93305 0.99701 1.21652 0.90901 1.00621 0.94755 1.21180 1.02898 0.92910 0.99590 1.17945 0.85357 0.94772 0.94086 1.46266 1.14180 1.11627 1.40142 1.23489 0.85689 1.00946 0.99385 1.21992 1.04353 0.93607 1.08571 1.24623 0.91698 1.00750 0.99330 1.78079 1.20281 0.98476 1.14816 1.22185 1.00218 0.81479 0.97778 0.96540 0.94685 0.92945 0.92613 0.88517 0.92095 0.89452 0.88511 0.83781 0.81256 0.80416 0.81868 0.76243 0.79941 0.79064 0.93753 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.93 8.01 127.77 1.02 5.95 16 2 N -0.61 -29.30 2.51 -696.06 -1.75 -31.04 16 3 C -0.26 -15.15 9.93 84.03 0.83 -14.31 16 4 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 5 C -0.02 -1.19 5.41 84.86 0.46 -0.73 16 6 N -0.95 -60.07 13.97 21.65 0.30 -59.77 16 7 Si 0.96 46.60 24.66 68.60 1.69 48.29 16 8 H -0.28 -13.23 6.68 99.48 0.66 -12.56 16 9 H -0.31 -14.97 7.11 99.48 0.71 -14.26 16 10 H -0.25 -11.21 7.01 99.48 0.70 -10.51 16 11 C 0.17 6.69 3.44 46.20 0.16 6.85 16 12 H 0.09 3.38 7.95 -2.38 -0.02 3.37 16 13 C -0.15 -4.58 6.64 31.99 0.21 -4.37 16 14 C 0.11 2.78 5.54 86.85 0.48 3.26 16 15 N -0.61 -20.49 3.33 -815.37 -2.71 -23.21 16 16 C 0.57 20.49 6.09 86.72 0.53 21.02 16 17 O -0.55 -24.51 14.62 -3.97 -0.06 -24.57 16 18 C -0.16 -4.27 5.11 -19.99 -0.10 -4.38 16 19 C -0.07 -1.25 8.24 22.51 0.19 -1.06 16 20 C -0.13 -1.25 10.02 22.24 0.22 -1.03 16 21 C -0.06 -0.50 10.03 22.30 0.22 -0.28 16 22 C -0.15 -1.94 9.45 22.36 0.21 -1.73 16 23 C 0.17 4.18 6.68 38.49 0.26 4.43 16 24 N -0.34 -9.62 3.77 -186.72 -0.70 -10.32 16 25 C 0.04 0.86 10.81 83.38 0.90 1.76 16 26 C -0.26 -5.26 10.80 22.01 0.24 -5.02 16 27 C 0.02 0.68 12.02 85.26 1.02 1.71 16 28 N -0.30 -10.59 8.10 -56.97 -0.46 -11.05 16 29 C 0.11 4.26 6.50 86.74 0.56 4.82 16 30 H 0.02 0.74 7.64 -2.39 -0.02 0.72 16 31 H 0.04 1.66 3.06 -2.39 -0.01 1.66 16 32 H 0.05 2.11 6.37 -2.38 -0.02 2.10 16 33 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 34 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.06 2.07 6.35 -2.39 -0.02 2.05 16 36 H 0.09 1.91 7.14 -2.38 -0.02 1.90 16 37 H 0.10 1.90 7.70 -2.39 -0.02 1.89 16 38 H 0.14 2.19 7.07 -2.91 -0.02 2.17 16 39 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 40 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 41 H 0.16 1.09 6.79 -2.91 -0.02 1.07 16 42 H 0.22 1.80 7.10 -2.91 -0.02 1.78 16 43 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.04 1.96 6.58 -2.39 -0.02 1.95 16 46 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -86.22 365.11 4.69 -81.53 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.95 Total: 13.25 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 7.42 Total: 16.88 kcal Atomic # 7 Polarization: -130.07 SS G_CDS: -5.32 Total: -135.39 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.06 Total: -24.57 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 1.69 Total: 48.29 kcal Total: -86.22 4.69 -81.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972421897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.474 kcal (2) G-P(sol) polarization free energy of solvation -86.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds