Wall clock time and date at job start Sat Apr 11 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36932 * 119.99766 * 2 1 4 4 H 1.08005 * 119.99673 * 204.86220 * 3 2 1 5 5 C 1.38810 * 120.00263 * 24.85732 * 3 2 1 6 6 N 1.31615 * 120.00096 * 5.76721 * 5 3 2 7 7 Si 1.86807 * 120.00093 * 185.76890 * 5 3 2 8 8 H 1.48507 * 109.47160 * 89.99611 * 7 5 3 9 9 H 1.48497 * 109.47336 * 209.99886 * 7 5 3 10 10 H 1.48502 * 109.46865 * 330.00269 * 7 5 3 11 11 C 1.46499 * 120.00237 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.64130 * 176.86149 * 11 2 1 13 13 C 1.55155 * 110.72208 * 300.00504 * 11 2 1 14 14 C 1.54912 * 101.58382 * 153.86188 * 13 11 2 15 15 N 1.47427 * 104.83015 * 322.99147 * 14 13 11 16 16 C 1.34776 * 125.64608 * 204.09077 * 15 14 13 17 17 O 1.21700 * 119.99942 * 182.53026 * 16 15 14 18 18 C 1.46661 * 120.00130 * 2.53076 * 16 15 14 19 19 C 1.37832 * 126.82146 * 172.09577 * 18 16 15 20 20 N 1.32965 * 107.98627 * 179.73846 * 19 18 16 21 21 C 1.31791 * 109.77743 * 0.39767 * 20 19 18 22 22 C 1.47829 * 125.50683 * 179.86424 * 21 20 19 23 23 C 1.39580 * 120.14616 * 359.69273 * 22 21 20 24 24 C 1.37952 * 119.85490 * 179.97438 * 23 22 21 25 25 C 1.38367 * 120.14582 * 359.97438 * 24 23 22 26 26 C 1.38361 * 120.29085 * 0.02562 * 25 24 23 27 27 C 1.37958 * 120.14763 * 359.97438 * 26 25 24 28 28 N 1.35903 * 108.98742 * 359.59661 * 21 20 19 29 29 H 0.97000 * 126.55569 * 180.26150 * 28 21 20 30 30 C 1.47015 * 108.70398 * 24.35520 * 15 14 13 31 31 H 1.09004 * 109.47438 * 275.16392 * 1 2 3 32 32 H 1.08995 * 109.47468 * 35.16575 * 1 2 3 33 33 H 1.09002 * 109.46911 * 155.16746 * 1 2 3 34 34 H 0.96996 * 120.00069 * 179.97438 * 6 5 3 35 35 H 1.09000 * 111.00846 * 35.78692 * 13 11 2 36 36 H 1.08999 * 111.03932 * 271.95321 * 13 11 2 37 37 H 1.08994 * 110.36911 * 204.15039 * 14 13 11 38 38 H 1.09003 * 110.45872 * 81.87604 * 14 13 11 39 39 H 1.07999 * 126.00480 * 359.97438 * 19 18 16 40 40 H 1.08008 * 120.07490 * 359.70056 * 23 22 21 41 41 H 1.08001 * 119.93160 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.85463 * 179.97438 * 25 24 23 43 43 H 1.08002 * 119.92368 * 179.97438 * 26 25 24 44 44 H 1.07996 * 120.07246 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.88367 * 118.12993 * 30 15 14 46 46 H 1.09005 * 109.88379 * 239.29468 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1546 1.2292 -0.3933 5 6 1.5520 2.3323 0.5053 6 7 0.3738 2.2585 1.0872 7 14 2.4200 3.9800 0.3595 8 1 2.0268 4.6358 -0.9136 9 1 2.0337 4.8460 1.5023 10 1 3.8898 3.7681 0.3736 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0922 -0.0554 13 6 1.8436 -2.1064 1.2576 14 6 2.1172 -3.5472 0.7585 15 7 1.6778 -3.5488 -0.6488 16 6 1.2949 -4.6336 -1.3509 17 8 0.9944 -4.5236 -2.5251 18 6 1.2404 -5.9467 -0.6999 19 6 0.7303 -7.1116 -1.2314 20 7 0.8752 -8.0741 -0.3255 21 6 1.4425 -7.5845 0.7586 22 6 1.7626 -8.3513 1.9812 23 6 1.4568 -9.7112 2.0559 24 6 1.7586 -10.4211 3.1996 25 6 2.3637 -9.7882 4.2710 26 6 2.6694 -8.4405 4.2034 27 6 2.3729 -7.7189 3.0656 28 7 1.6910 -6.2619 0.5687 29 1 2.1055 -5.6552 1.2019 30 6 1.7326 -2.1719 -1.1614 31 1 -0.3634 0.0925 1.0235 32 1 -0.3634 0.8400 -0.5918 33 1 -0.3633 -0.9327 -0.4316 34 1 -0.0437 3.0596 1.4406 35 1 0.7957 -1.9796 1.5294 36 1 2.4953 -1.8522 2.0935 37 1 1.5375 -4.2658 1.3377 38 1 3.1805 -3.7777 0.8242 39 1 0.2935 -7.2238 -2.2127 40 1 0.9808 -10.2056 1.2219 41 1 1.5222 -11.4733 3.2589 42 1 2.5975 -10.3485 5.1642 43 1 3.1413 -7.9524 5.0434 44 1 2.6125 -6.6671 3.0140 45 1 2.4418 -2.1116 -1.9869 46 1 0.7430 -1.8615 -1.4967 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972441456.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:21 Heat of formation + Delta-G solvation = 74.818174 kcal Electronic energy + Delta-G solvation = -28691.286545 eV Core-core repulsion = 24775.337222 eV Total energy + Delta-G solvation = -3915.949323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.33511 -40.98199 -39.78594 -38.94275 -36.71011 -34.30091 -33.44475 -33.06908 -31.82428 -31.49482 -30.10350 -29.21645 -28.10816 -26.02740 -24.70605 -23.96093 -23.70083 -22.64161 -22.21100 -20.99683 -20.92461 -19.07796 -18.94475 -18.12101 -17.66299 -17.07029 -16.79207 -16.78338 -16.23898 -16.13587 -15.63207 -15.54906 -15.11661 -15.02772 -14.89113 -14.47718 -14.44033 -14.29130 -14.21605 -13.92404 -13.68105 -13.32953 -13.08871 -12.80329 -12.65872 -12.40838 -12.33696 -12.30102 -12.09249 -12.04975 -11.86920 -11.67205 -11.61177 -11.38924 -11.20189 -10.66347 -10.62732 -9.90900 -9.89822 -9.08653 -8.83057 -7.84982 -5.37087 -0.39013 0.45527 0.50996 1.46633 1.48487 1.49693 1.57400 1.73458 1.83234 2.12527 2.49385 2.92360 3.02600 3.27425 3.34596 3.43756 3.67149 3.69810 3.90583 3.99672 4.10239 4.11105 4.15150 4.22410 4.28348 4.32417 4.40884 4.44594 4.53908 4.64987 4.67004 4.84478 4.87770 4.90776 5.03390 5.12744 5.14373 5.27940 5.29477 5.33688 5.48427 5.50173 5.58888 5.63034 5.69623 5.97077 6.04804 6.24822 6.30632 6.66433 6.84486 7.11899 7.80347 8.25771 9.18213 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.002381 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.616058 B =11758.444136 C =12957.014758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.077 0.923 5 C -0.049 4.049 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.290 1.290 9 H -0.295 1.295 10 H -0.265 1.265 11 C 0.168 3.832 12 H 0.090 0.910 13 C -0.138 4.138 14 C 0.092 3.908 15 N -0.610 5.610 16 C 0.605 3.395 17 O -0.567 6.567 18 C -0.085 4.085 19 C 0.068 3.932 20 N -0.501 5.501 21 C 0.280 3.720 22 C -0.048 4.048 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.103 4.103 26 C -0.119 4.119 27 C -0.111 4.111 28 N -0.539 5.539 29 H 0.435 0.565 30 C 0.097 3.903 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.248 0.752 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.194 0.806 40 H 0.130 0.870 41 H 0.151 0.849 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.134 0.866 45 H 0.064 0.936 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -24.761 8.934 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.324 5.324 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.244 4.244 6 N -0.584 5.584 7 Si 0.799 3.201 8 H -0.218 1.218 9 H -0.222 1.222 10 H -0.189 1.189 11 C 0.059 3.941 12 H 0.108 0.892 13 C -0.178 4.178 14 C -0.030 4.030 15 N -0.342 5.342 16 C 0.394 3.606 17 O -0.446 6.446 18 C -0.201 4.201 19 C -0.088 4.088 20 N -0.220 5.220 21 C 0.020 3.980 22 C -0.050 4.050 23 C -0.106 4.106 24 C -0.140 4.140 25 C -0.122 4.122 26 C -0.137 4.137 27 C -0.131 4.131 28 N -0.150 5.150 29 H 0.283 0.717 30 C -0.027 4.027 31 H 0.029 0.971 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.124 0.876 39 H 0.211 0.789 40 H 0.148 0.852 41 H 0.168 0.832 42 H 0.171 0.829 43 H 0.171 0.829 44 H 0.152 0.848 45 H 0.083 0.917 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.822 -25.332 8.199 27.255 hybrid contribution 0.190 2.532 -0.114 2.541 sum 6.012 -22.800 8.085 24.927 Atomic orbital electron populations 1.20486 0.83046 0.95125 0.97745 1.43993 1.01807 1.01035 1.85525 1.19570 0.99532 0.86850 1.33563 0.90546 1.25854 0.98057 1.02022 0.98483 1.70215 1.17412 1.28054 1.42723 0.85217 0.78704 0.79675 0.76499 1.21755 1.22185 1.18916 1.21471 0.96382 0.84584 0.91623 0.89207 1.23222 1.02436 0.92591 0.99591 1.22777 1.01218 0.98788 0.80231 1.48391 1.64834 1.07053 1.13939 1.16674 0.77059 0.81754 0.85065 1.90831 1.51902 1.85463 1.16439 1.21128 1.14318 0.96274 0.88412 1.23108 0.99429 0.86302 1.00005 1.70280 1.19385 1.31625 1.00686 1.21845 0.99181 0.81245 0.95713 1.17773 1.03831 0.93780 0.89663 1.21339 0.97905 0.92232 0.99132 1.21452 0.98610 1.01368 0.92562 1.21748 0.96230 0.94942 0.99263 1.21404 0.99695 0.94764 0.97845 1.21356 0.98220 1.00648 0.92890 1.44032 1.46572 1.10728 1.13665 0.71718 1.22510 1.01325 0.80252 0.98623 0.97082 0.96628 0.96381 0.94254 0.92293 0.88278 0.89828 0.87632 0.78918 0.85157 0.83166 0.82899 0.82897 0.84769 0.91724 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.84 7.72 127.77 0.99 9.83 16 2 N -0.60 -28.44 2.94 -696.14 -2.05 -30.48 16 3 C -0.27 -13.77 9.61 84.03 0.81 -12.96 16 4 H 0.08 3.79 7.82 -2.91 -0.02 3.77 16 5 C -0.05 -2.63 5.24 84.86 0.44 -2.19 16 6 N -0.94 -53.73 10.45 21.65 0.23 -53.51 16 7 Si 0.97 43.53 29.56 68.60 2.03 45.56 16 8 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 9 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 C 0.17 6.08 3.43 46.18 0.16 6.24 16 12 H 0.09 3.09 7.94 -2.39 -0.02 3.07 16 13 C -0.14 -3.99 6.66 31.99 0.21 -3.77 16 14 C 0.09 2.00 5.52 86.86 0.48 2.48 16 15 N -0.61 -18.18 3.33 -816.47 -2.72 -20.90 16 16 C 0.60 19.56 7.81 86.44 0.68 20.24 16 17 O -0.57 -22.43 17.25 -4.35 -0.07 -22.50 16 18 C -0.08 -2.28 6.88 40.23 0.28 -2.01 16 19 C 0.07 1.82 11.70 84.43 0.99 2.81 16 20 N -0.50 -13.09 10.79 -187.96 -2.03 -15.12 16 21 C 0.28 6.24 7.74 136.60 1.06 7.30 16 22 C -0.05 -0.85 5.87 -20.09 -0.12 -0.97 16 23 C -0.09 -1.38 9.69 22.53 0.22 -1.16 16 24 C -0.12 -1.32 10.03 22.23 0.22 -1.10 16 25 C -0.10 -0.89 10.04 22.33 0.22 -0.67 16 26 C -0.12 -1.13 10.03 22.23 0.22 -0.90 16 27 C -0.11 -1.42 9.69 22.53 0.22 -1.20 16 28 N -0.54 -11.19 5.36 -176.46 -0.95 -12.13 16 29 H 0.43 6.60 4.48 -92.71 -0.41 6.18 16 30 C 0.10 3.43 6.41 86.74 0.56 3.98 16 31 H 0.01 0.58 7.34 -2.38 -0.02 0.56 16 32 H 0.01 0.82 7.27 -2.39 -0.02 0.80 16 33 H 0.02 0.79 6.18 -2.39 -0.01 0.78 16 34 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.06 1.97 7.34 -2.39 -0.02 1.95 16 36 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 37 H 0.08 1.47 5.49 -2.39 -0.01 1.46 16 38 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.19 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.13 2.21 7.82 -2.91 -0.02 2.19 16 41 H 0.15 0.91 8.06 -2.91 -0.02 0.88 16 42 H 0.15 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.13 1.18 7.14 -2.91 -0.02 1.16 16 45 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.05 2.12 6.02 -2.38 -0.01 2.10 16 Total: -1.00 -70.99 374.88 2.68 -68.31 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.60 Total: 14.82 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 7.63 Total: 25.95 kcal Atomic # 7 Polarization: -124.62 SS G_CDS: -7.51 Total: -132.13 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.07 Total: -22.50 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -70.99 2.68 -68.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972441456.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.124 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds