Wall clock time and date at job start Sat Apr 11 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36933 * 120.00005 * 2 1 4 4 H 1.07998 * 119.99836 * 204.94105 * 3 2 1 5 5 C 1.38813 * 120.00300 * 24.94411 * 3 2 1 6 6 N 1.31623 * 119.99725 * 5.28946 * 5 3 2 7 7 Si 1.86797 * 120.00070 * 185.29461 * 5 3 2 8 8 H 1.48504 * 109.47254 * 89.99769 * 7 5 3 9 9 H 1.48497 * 109.47143 * 209.99664 * 7 5 3 10 10 H 1.48500 * 109.47134 * 329.99868 * 7 5 3 11 11 C 1.46503 * 119.99677 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.77435 * 178.22081 * 11 2 1 13 13 C 1.55153 * 110.71806 * 54.98333 * 11 2 1 14 14 C 1.55132 * 101.48535 * 205.96605 * 13 11 2 15 15 N 1.47427 * 104.72176 * 37.29559 * 14 13 11 16 16 C 1.34771 * 125.65159 * 155.81829 * 15 14 13 17 17 O 1.21554 * 120.00437 * 185.52476 * 16 15 14 18 18 C 1.47857 * 119.99815 * 5.52520 * 16 15 14 19 19 C 1.39623 * 120.11534 * 204.45969 * 18 16 15 20 20 C 1.37974 * 119.99055 * 180.02562 * 19 18 16 21 21 C 1.38266 * 120.21705 * 0.02562 * 20 19 18 22 22 C 1.38914 * 120.22431 * 359.97438 * 21 20 19 23 23 N 1.40209 * 119.99204 * 179.97438 * 22 21 20 24 24 C 1.35217 * 126.05494 * 5.02450 * 23 22 21 25 25 C 1.35323 * 107.71543 * 179.97438 * 24 23 22 26 26 C 1.39918 * 107.92994 * 0.02562 * 25 24 23 27 27 N 1.30874 * 108.24478 * 359.97438 * 26 25 24 28 28 C 1.38599 * 120.01365 * 0.25603 * 22 21 20 29 29 C 1.47027 * 108.70257 * 335.55392 * 15 14 13 30 30 H 1.08994 * 109.47557 * 275.05695 * 1 2 3 31 31 H 1.09007 * 109.46888 * 35.05505 * 1 2 3 32 32 H 1.09001 * 109.47091 * 155.04547 * 1 2 3 33 33 H 0.97007 * 119.99543 * 180.02562 * 6 5 3 34 34 H 1.09006 * 111.00760 * 324.20418 * 13 11 2 35 35 H 1.08997 * 111.01054 * 88.02079 * 13 11 2 36 36 H 1.09001 * 110.49461 * 278.45750 * 14 13 11 37 37 H 1.08994 * 110.34510 * 156.05891 * 14 13 11 38 38 H 1.08004 * 120.00215 * 359.97438 * 19 18 16 39 39 H 1.07995 * 119.89033 * 179.97438 * 20 19 18 40 40 H 1.07994 * 119.88173 * 180.02562 * 21 20 19 41 41 H 1.08006 * 126.14585 * 0.02562 * 24 23 22 42 42 H 1.08004 * 126.03276 * 180.26435 * 25 24 23 43 43 H 1.07998 * 125.87658 * 180.02562 * 26 25 24 44 44 H 1.07993 * 120.10800 * 179.74774 * 28 22 21 45 45 H 1.09001 * 109.88126 * 120.70505 * 29 15 14 46 46 H 1.09001 * 109.88372 * 241.71575 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1542 1.2295 -0.3944 5 6 1.5528 2.3320 0.5070 6 7 0.3711 2.2592 1.0820 7 14 2.4267 3.9775 0.3730 8 1 2.0424 4.6400 -0.8993 9 1 2.0366 4.8397 1.5174 10 1 3.8957 3.7611 0.3945 11 6 2.1975 -1.2688 0.0006 12 1 3.2729 -1.0944 -0.0312 13 6 1.7507 -2.1610 -1.1875 14 6 2.0691 -3.5793 -0.6456 15 7 1.7323 -3.5168 0.7883 16 6 1.4054 -4.5685 1.5650 17 8 1.0479 -4.3887 2.7128 18 6 1.4817 -5.9413 1.0210 19 6 0.7025 -6.9587 1.5751 20 6 0.7761 -8.2389 1.0657 21 6 1.6203 -8.5192 0.0072 22 6 2.3996 -7.5137 -0.5509 23 7 3.2543 -7.8034 -1.6239 24 6 3.3469 -8.9875 -2.2703 25 6 4.2825 -8.8556 -3.2391 26 6 4.7790 -7.5487 -3.1834 27 7 4.1635 -6.9174 -2.2162 28 6 2.3366 -6.2254 -0.0436 29 6 1.8181 -2.1177 1.2322 30 1 -0.3634 0.0906 1.0236 31 1 -0.3633 0.8413 -0.5903 32 1 -0.3633 -0.9317 -0.4336 33 1 -0.0462 3.0603 1.4359 34 1 0.6850 -2.0445 -1.3845 35 1 2.3369 -1.9447 -2.0807 36 1 3.1263 -3.8097 -0.7772 37 1 1.4522 -4.3242 -1.1480 38 1 0.0428 -6.7439 2.4028 39 1 0.1730 -9.0247 1.4958 40 1 1.6733 -9.5230 -0.3875 41 1 2.7761 -9.8782 -2.0531 42 1 4.5888 -9.6226 -3.9351 43 1 5.5388 -7.1322 -3.8282 44 1 2.9448 -5.4435 -0.4737 45 1 0.8539 -1.7931 1.6235 46 1 2.5828 -2.0195 2.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972558124.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:34 Heat of formation + Delta-G solvation = 104.545740 kcal Electronic energy + Delta-G solvation = -29022.484976 eV Core-core repulsion = 25107.824737 eV Total energy + Delta-G solvation = -3914.660239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.48980 -41.53211 -39.75652 -38.81329 -36.66805 -34.53833 -33.73984 -32.55007 -31.38065 -31.05493 -29.97386 -29.39007 -28.10439 -26.13987 -24.69358 -24.44756 -23.61386 -22.24830 -21.54913 -20.93401 -20.62988 -19.01044 -18.98217 -17.99115 -17.54491 -17.26297 -16.89823 -16.67438 -16.22601 -15.91319 -15.70285 -15.40805 -15.08827 -14.97667 -14.74444 -14.51786 -14.37611 -14.13925 -13.83223 -13.72073 -13.61451 -13.38553 -13.22009 -12.81293 -12.78452 -12.75739 -12.43646 -12.36748 -12.23259 -12.13560 -11.82136 -11.64564 -11.53269 -11.37925 -11.17687 -10.66272 -10.18685 -10.11803 -9.79815 -9.09266 -8.83316 -7.85452 -5.38772 -0.39316 -0.08308 1.12044 1.39531 1.46644 1.47780 1.56944 1.67652 1.81166 1.91206 2.48631 2.68695 3.17193 3.28184 3.47531 3.58098 3.69749 3.79460 3.90549 3.97412 4.07236 4.09496 4.18318 4.22762 4.26230 4.31939 4.37553 4.52160 4.66581 4.71204 4.76366 4.78519 4.81546 4.93589 5.04277 5.08322 5.11591 5.13838 5.19375 5.24094 5.31427 5.36448 5.53769 5.62341 5.69446 5.74145 6.18656 6.29576 6.37130 6.67409 6.91649 7.11104 7.79565 8.25762 9.17444 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016038 B = 0.002659 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.481950 B =10526.903551 C =11887.056166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.601 5.601 3 C -0.267 4.267 4 H 0.079 0.921 5 C -0.053 4.053 6 N -0.941 5.941 7 Si 0.975 3.025 8 H -0.283 1.283 9 H -0.298 1.298 10 H -0.266 1.266 11 C 0.169 3.831 12 H 0.086 0.914 13 C -0.140 4.140 14 C 0.109 3.891 15 N -0.606 5.606 16 C 0.561 3.439 17 O -0.583 6.583 18 C -0.119 4.119 19 C -0.084 4.084 20 C -0.083 4.083 21 C -0.104 4.104 22 C 0.141 3.859 23 N -0.338 5.338 24 C 0.050 3.950 25 C -0.265 4.265 26 C 0.051 3.949 27 N -0.337 5.337 28 C -0.109 4.109 29 C 0.098 3.902 30 H -0.003 1.003 31 H 0.023 0.977 32 H 0.026 0.974 33 H 0.248 0.752 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.135 0.865 39 H 0.181 0.819 40 H 0.176 0.824 41 H 0.215 0.785 42 H 0.181 0.819 43 H 0.212 0.788 44 H 0.145 0.855 45 H 0.040 0.960 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.153 -29.861 -10.089 31.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.397 4.397 4 H 0.097 0.903 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.803 3.197 8 H -0.210 1.210 9 H -0.225 1.225 10 H -0.190 1.190 11 C 0.060 3.940 12 H 0.104 0.896 13 C -0.179 4.179 14 C -0.013 4.013 15 N -0.338 5.338 16 C 0.352 3.648 17 O -0.464 6.464 18 C -0.122 4.122 19 C -0.103 4.103 20 C -0.101 4.101 21 C -0.125 4.125 22 C 0.049 3.951 23 N -0.114 5.114 24 C -0.091 4.091 25 C -0.293 4.293 26 C -0.136 4.136 27 N -0.157 5.157 28 C -0.130 4.130 29 C -0.027 4.027 30 H 0.015 0.985 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.153 0.847 39 H 0.198 0.802 40 H 0.193 0.807 41 H 0.232 0.768 42 H 0.199 0.801 43 H 0.228 0.772 44 H 0.163 0.837 45 H 0.059 0.941 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.708 -28.540 -8.725 30.213 hybrid contribution 0.226 1.000 0.123 1.033 sum 4.934 -27.540 -8.602 29.271 Atomic orbital electron populations 1.20479 0.82878 0.95690 0.97236 1.44064 1.01930 1.00949 1.85312 1.19637 0.99801 0.86727 1.33542 0.90285 1.25978 0.98095 1.02432 0.98276 1.70261 1.17348 1.28139 1.42964 0.85151 0.78584 0.79307 0.76677 1.20966 1.22458 1.19022 1.21529 0.96405 0.84726 0.91371 0.89624 1.23299 1.02529 0.92917 0.99196 1.22736 1.01155 0.98418 0.78944 1.48489 1.66637 1.06762 1.11875 1.18543 0.76686 0.84934 0.84681 1.90747 1.49548 1.86439 1.19706 1.19602 1.01478 0.92589 0.98576 1.21502 0.97362 0.92597 0.98887 1.21340 0.97821 0.96071 0.94870 1.21442 0.95192 0.99326 0.96520 1.17598 0.93639 0.94603 0.89258 1.45991 1.29984 1.09930 1.25486 1.23364 1.00593 0.90857 0.94313 1.22035 1.03323 0.98863 1.05045 1.24687 0.99110 0.94233 0.95544 1.77483 1.06866 1.17648 1.13654 1.21440 0.99083 0.96917 0.95517 1.22578 1.00188 0.80386 0.99588 0.98468 0.95856 0.95611 0.94257 0.91273 0.88052 0.89274 0.89337 0.84735 0.80195 0.80714 0.76796 0.80136 0.77151 0.83741 0.94115 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 7.71 127.77 0.99 10.34 16 2 N -0.60 -30.34 2.93 -696.14 -2.04 -32.38 16 3 C -0.27 -14.60 9.62 84.03 0.81 -13.79 16 4 H 0.08 4.10 7.83 -2.91 -0.02 4.07 16 5 C -0.05 -2.98 5.24 84.86 0.45 -2.54 16 6 N -0.94 -56.86 10.44 21.65 0.23 -56.64 16 7 Si 0.97 45.34 29.56 68.60 2.03 47.37 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 9 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 C 0.17 6.85 3.44 46.18 0.16 7.01 16 12 H 0.09 3.36 7.95 -2.39 -0.02 3.34 16 13 C -0.14 -4.47 6.60 32.06 0.21 -4.26 16 14 C 0.11 3.08 5.00 86.93 0.43 3.51 16 15 N -0.61 -21.48 3.32 -814.73 -2.71 -24.19 16 16 C 0.56 20.36 7.64 86.79 0.66 21.02 16 17 O -0.58 -25.67 16.93 -3.89 -0.07 -25.73 16 18 C -0.12 -3.25 5.67 -20.10 -0.11 -3.36 16 19 C -0.08 -1.80 9.59 22.54 0.22 -1.58 16 20 C -0.08 -1.04 10.02 22.21 0.22 -0.81 16 21 C -0.10 -1.23 9.45 22.44 0.21 -1.02 16 22 C 0.14 2.70 6.67 38.05 0.25 2.95 16 23 N -0.34 -6.27 3.80 -187.86 -0.71 -6.98 16 24 C 0.05 0.56 10.79 83.50 0.90 1.46 16 25 C -0.26 -2.86 10.81 22.00 0.24 -2.62 16 26 C 0.05 0.77 12.03 85.24 1.03 1.79 16 27 N -0.34 -7.36 11.87 -56.97 -0.68 -8.04 16 28 C -0.11 -2.65 7.69 22.65 0.17 -2.48 16 29 C 0.10 4.11 6.51 86.73 0.56 4.68 16 30 H 0.00 -0.18 7.27 -2.39 -0.02 -0.19 16 31 H 0.02 1.27 7.25 -2.38 -0.02 1.25 16 32 H 0.03 1.15 6.12 -2.39 -0.01 1.14 16 33 H 0.25 14.61 8.31 -92.70 -0.77 13.83 16 34 H 0.07 2.37 6.14 -2.38 -0.01 2.35 16 35 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.09 2.26 6.84 -2.39 -0.02 2.24 16 37 H 0.09 2.24 6.83 -2.39 -0.02 2.23 16 38 H 0.13 2.99 7.84 -2.91 -0.02 2.96 16 39 H 0.18 0.83 8.06 -2.91 -0.02 0.80 16 40 H 0.18 0.57 6.75 -2.91 -0.02 0.55 16 41 H 0.22 0.44 7.06 -2.91 -0.02 0.42 16 42 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 43 H 0.21 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.15 3.74 4.25 -2.91 -0.01 3.73 16 45 H 0.04 1.99 7.06 -2.39 -0.02 1.97 16 46 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -79.01 372.59 4.46 -74.55 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.01 Total: 11.74 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.40 Total: 20.29 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -5.92 Total: -128.23 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.07 Total: -25.73 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -79.01 4.46 -74.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972558124.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.100 kcal (2) G-P(sol) polarization free energy of solvation -79.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds