Wall clock time and date at job start Sat Apr 11 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 119.99927 * 2 1 4 4 H 1.08002 * 120.00017 * 142.33607 * 3 2 1 5 5 C 1.38805 * 119.99873 * 322.33572 * 3 2 1 6 6 N 1.31625 * 119.99872 * 157.81894 * 5 3 2 7 7 Si 1.86797 * 120.00355 * 337.82086 * 5 3 2 8 8 H 1.48499 * 109.47138 * 95.34937 * 7 5 3 9 9 H 1.48494 * 109.47457 * 215.35210 * 7 5 3 10 10 H 1.48505 * 109.46739 * 335.35512 * 7 5 3 11 11 C 1.46502 * 120.00110 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64055 * 176.85888 * 11 2 1 13 13 C 1.55160 * 110.71935 * 299.99746 * 11 2 1 14 14 C 1.54911 * 101.57792 * 153.86729 * 13 11 2 15 15 N 1.47428 * 104.83438 * 322.99061 * 14 13 11 16 16 C 1.34777 * 125.65186 * 203.86626 * 15 14 13 17 17 O 1.21575 * 119.99865 * 355.08612 * 16 15 14 18 18 C 1.47647 * 120.00073 * 175.09428 * 16 15 14 19 19 C 1.40244 * 120.49748 * 187.37059 * 18 16 15 20 20 C 1.38003 * 118.36256 * 179.80106 * 19 18 16 21 21 C 1.39180 * 119.25054 * 0.45033 * 20 19 18 22 22 N 1.39416 * 119.52708 * 179.76800 * 21 20 19 23 23 C 1.36714 * 125.68921 * 359.71166 * 22 21 20 24 24 C 1.34773 * 108.19093 * 179.89230 * 23 22 21 25 25 C 1.41023 * 107.49523 * 0.37024 * 24 23 22 26 26 C 1.34771 * 107.50146 * 359.77042 * 25 24 23 27 27 N 1.32447 * 120.94235 * 359.79274 * 21 20 19 28 28 C 1.31627 * 121.79779 * 359.97300 * 27 21 20 29 29 C 1.47028 * 108.70027 * 24.12941 * 15 14 13 30 30 H 1.09000 * 109.46941 * 272.68175 * 1 2 3 31 31 H 1.08997 * 109.47391 * 32.68369 * 1 2 3 32 32 H 1.08998 * 109.47246 * 152.68222 * 1 2 3 33 33 H 0.97002 * 119.99404 * 180.02562 * 6 5 3 34 34 H 1.09002 * 110.99866 * 35.79584 * 13 11 2 35 35 H 1.08996 * 111.03962 * 271.95203 * 13 11 2 36 36 H 1.08999 * 110.36412 * 204.16020 * 14 13 11 37 37 H 1.08993 * 110.46331 * 81.87633 * 14 13 11 38 38 H 1.08007 * 120.82140 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.37276 * 180.20249 * 20 19 18 40 40 H 1.08006 * 125.90420 * 0.02562 * 23 22 21 41 41 H 1.07994 * 126.24936 * 180.16594 * 24 23 22 42 42 H 1.07996 * 126.24688 * 179.74927 * 25 24 23 43 43 H 1.08006 * 125.90622 * 179.97438 * 26 25 24 44 44 H 1.08007 * 119.67909 * 180.02562 * 28 27 21 45 45 H 1.08998 * 109.88268 * 118.35738 * 29 15 14 46 46 H 1.09002 * 109.88382 * 239.52351 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0609 1.2834 0.5715 5 6 1.6725 2.2628 -0.7345 6 7 2.0375 3.4876 -0.4196 7 14 0.5125 1.9738 -2.1699 8 1 -0.8912 2.1296 -1.7110 9 1 0.7955 2.9618 -3.2417 10 1 0.7111 0.6000 -2.6978 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0922 -0.0554 13 6 1.8436 -2.1064 1.2578 14 6 2.1173 -3.5471 0.7586 15 7 1.6779 -3.5488 -0.6486 16 6 1.2991 -4.6343 -1.3520 17 8 1.3868 -5.7409 -0.8561 18 6 0.7777 -4.4796 -2.7246 19 6 0.2380 -5.5783 -3.4090 20 6 -0.2405 -5.3830 -4.6886 21 6 -0.1638 -4.1149 -5.2572 22 7 -0.6410 -3.9122 -6.5514 23 6 -1.1945 -4.8686 -7.3563 24 6 -1.5343 -4.2898 -8.5250 25 6 -1.1716 -2.9294 -8.4456 26 6 -0.6280 -2.7252 -7.2294 27 7 0.3564 -3.0982 -4.5865 28 6 0.8200 -3.2392 -3.3627 29 6 1.7274 -2.1711 -1.1596 30 1 -0.3633 0.0481 1.0265 31 1 -0.3634 0.8649 -0.5549 32 1 -0.3633 -0.9130 -0.4716 33 1 1.7037 4.2401 -0.9327 34 1 0.7957 -1.9794 1.5295 35 1 2.4954 -1.8521 2.0936 36 1 1.5375 -4.2657 1.3379 37 1 3.1805 -3.7776 0.8243 38 1 0.1944 -6.5525 -2.9447 39 1 -0.6659 -6.2057 -5.2441 40 1 -1.3371 -5.9079 -7.0992 41 1 -1.9966 -4.7793 -9.3694 42 1 -1.3047 -2.1868 -9.2184 43 1 -0.2475 -1.7862 -6.8552 44 1 1.2368 -2.3865 -2.8471 45 1 2.4333 -2.1080 -1.9878 46 1 0.7358 -1.8627 -1.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972568172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:37 Heat of formation + Delta-G solvation = 128.072400 kcal Electronic energy + Delta-G solvation = -29389.934368 eV Core-core repulsion = 25476.294322 eV Total energy + Delta-G solvation = -3913.640046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01324 -40.74098 -39.27687 -37.75124 -35.08026 -33.77284 -32.97104 -31.96084 -31.07184 -29.42875 -29.16033 -28.37050 -26.39921 -25.21691 -24.12908 -23.57267 -22.32865 -20.71552 -20.49356 -20.03678 -19.70450 -18.77811 -17.67905 -17.24614 -16.64870 -16.20005 -15.68496 -15.52828 -15.35556 -15.24927 -14.37142 -14.23050 -14.02281 -13.74612 -13.66426 -13.53057 -13.39566 -13.28906 -12.94889 -12.66632 -12.57041 -12.43578 -12.32449 -12.09988 -11.88279 -11.86447 -11.00468 -10.92484 -10.70208 -10.45159 -10.40227 -10.20852 -10.15129 -10.04273 -9.76497 -9.70258 -8.68703 -8.64161 -8.52283 -8.49392 -7.02226 -6.13842 -3.59216 0.11909 0.82682 1.94256 2.29481 2.74186 2.80805 2.88218 3.22561 3.39284 3.40712 3.57519 3.96599 4.23147 4.31387 4.39546 4.52143 4.55823 4.76518 4.83136 4.87136 4.99444 5.06466 5.17957 5.20714 5.21565 5.33664 5.34899 5.47821 5.50166 5.55756 5.64934 5.71530 5.87985 5.95672 5.96178 6.06600 6.07096 6.10853 6.21864 6.34182 6.46233 6.56115 6.59500 6.64626 6.73673 7.05565 7.43450 7.52330 7.87623 8.03247 8.22550 8.79130 9.53793 9.91293 11.00797 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.003942 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.184139 B = 7101.733911 C = 9710.858553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.595 5.595 3 C -0.279 4.279 4 H 0.083 0.917 5 C 0.041 3.959 6 N -0.893 5.893 7 Si 0.882 3.118 8 H -0.286 1.286 9 H -0.300 1.300 10 H -0.269 1.269 11 C 0.172 3.828 12 H 0.094 0.906 13 C -0.150 4.150 14 C 0.110 3.890 15 N -0.605 5.605 16 C 0.579 3.421 17 O -0.544 6.544 18 C -0.203 4.203 19 C 0.011 3.989 20 C -0.199 4.199 21 C 0.368 3.632 22 N -0.397 5.397 23 C -0.019 4.019 24 C -0.179 4.179 25 C -0.197 4.197 26 C 0.016 3.984 27 N -0.503 5.503 28 C 0.138 3.862 29 C 0.053 3.947 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.266 0.734 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.168 0.832 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.172 0.828 44 H 0.205 0.795 45 H 0.078 0.922 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 -17.360 -9.263 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.316 5.316 3 C -0.407 4.407 4 H 0.100 0.900 5 C -0.161 4.161 6 N -0.533 5.533 7 Si 0.712 3.288 8 H -0.214 1.214 9 H -0.228 1.228 10 H -0.193 1.193 11 C 0.063 3.937 12 H 0.112 0.888 13 C -0.190 4.190 14 C -0.012 4.012 15 N -0.338 5.338 16 C 0.368 3.632 17 O -0.424 6.424 18 C -0.209 4.209 19 C -0.015 4.015 20 C -0.222 4.222 21 C 0.140 3.860 22 N -0.073 5.073 23 C -0.143 4.143 24 C -0.203 4.203 25 C -0.221 4.221 26 C -0.109 4.109 27 N -0.215 5.215 28 C -0.020 4.020 29 C -0.071 4.071 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.173 0.827 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.189 0.811 44 H 0.220 0.780 45 H 0.096 0.904 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.742 -16.993 -9.217 19.905 hybrid contribution -0.844 -0.714 -0.675 1.295 sum -5.586 -17.707 -9.891 21.038 Atomic orbital electron populations 1.21360 0.84770 0.98738 0.98918 1.44047 1.00502 1.01303 1.85774 1.18764 1.10094 0.86624 1.25247 0.89984 1.25489 0.97962 0.95208 0.97455 1.69862 1.46057 0.97944 1.39435 0.86894 0.80157 0.78038 0.83670 1.21432 1.22766 1.19337 1.21585 0.97357 0.85124 0.89668 0.88794 1.23352 1.02930 0.92768 0.99999 1.22287 0.99798 0.98609 0.80534 1.48383 1.64577 1.07203 1.13622 1.17482 0.77802 0.83446 0.84439 1.90763 1.56267 1.24357 1.70968 1.20933 1.07208 0.95848 0.96887 1.21539 0.89169 0.99078 0.91739 1.21480 1.06831 0.96613 0.97233 1.18595 0.92144 0.90414 0.84812 1.41519 1.46379 1.10093 1.09293 1.21910 1.05781 0.94829 0.91809 1.21061 1.06459 0.94910 0.97875 1.21104 1.06423 0.97082 0.97482 1.22212 1.05616 0.90081 0.93022 1.67224 1.12987 1.31694 1.09569 1.24833 0.90709 0.98051 0.88360 1.23498 1.02011 0.81240 1.00374 0.95910 0.93802 0.94935 0.92446 0.90651 0.89672 0.90694 0.91166 0.82652 0.83526 0.81484 0.83807 0.83846 0.81064 0.77961 0.90402 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.12 8.43 59.84 0.50 2.62 16 2 N -0.59 -12.52 2.49 -171.39 -0.43 -12.95 16 3 C -0.28 -7.14 9.86 -15.06 -0.15 -7.29 16 4 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 5 C 0.04 1.10 5.32 -17.43 -0.09 1.01 16 6 N -0.89 -25.91 13.97 55.49 0.78 -25.14 16 7 Si 0.88 21.04 25.04 -169.99 -4.26 16.79 16 8 H -0.29 -6.75 6.67 56.52 0.38 -6.37 16 9 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 11 C 0.17 2.88 3.45 -66.10 -0.23 2.65 16 12 H 0.09 1.58 7.95 -51.93 -0.41 1.17 16 13 C -0.15 -2.11 6.66 -24.58 -0.16 -2.28 16 14 C 0.11 1.44 6.89 -2.53 -0.02 1.42 16 15 N -0.61 -8.71 3.33 -174.55 -0.58 -9.29 16 16 C 0.58 8.73 7.81 -12.42 -0.10 8.64 16 17 O -0.54 -9.33 16.74 5.30 0.09 -9.24 16 18 C -0.20 -2.76 5.89 -104.81 -0.62 -3.38 16 19 C 0.01 0.13 9.70 -38.91 -0.38 -0.25 16 20 C -0.20 -2.11 9.46 -39.32 -0.37 -2.48 16 21 C 0.37 4.81 7.48 -154.56 -1.16 3.65 16 22 N -0.40 -4.90 2.96 -62.64 -0.19 -5.08 16 23 C -0.02 -0.18 10.71 -16.60 -0.18 -0.36 16 24 C -0.18 -1.72 10.86 -39.75 -0.43 -2.15 16 25 C -0.20 -2.11 10.86 -39.76 -0.43 -2.54 16 26 C 0.02 0.20 10.99 -16.61 -0.18 0.02 16 27 N -0.50 -7.49 9.80 -12.00 -0.12 -7.60 16 28 C 0.14 1.98 9.78 -17.15 -0.17 1.81 16 29 C 0.05 0.80 4.42 -3.06 -0.01 0.78 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.97 3.14 -51.93 -0.16 0.80 16 32 H 0.03 0.56 6.12 -51.93 -0.32 0.25 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 1.11 7.34 -51.93 -0.38 0.73 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.16 1.53 7.75 -52.48 -0.41 1.12 16 39 H 0.15 1.07 6.66 -52.49 -0.35 0.72 16 40 H 0.17 1.10 6.96 -52.48 -0.37 0.73 16 41 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.17 2.11 8.03 -52.48 -0.42 1.69 16 44 H 0.20 2.97 2.78 -56.18 -0.16 2.81 16 45 H 0.08 1.11 6.81 -51.93 -0.35 0.76 16 46 H 0.08 1.31 4.51 -51.93 -0.23 1.07 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -31.32 366.79 -9.02 -40.34 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.68 Total: 4.75 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -4.17 Total: 1.88 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.54 Total: -60.06 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.26 Total: 16.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.32 -9.02 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972568172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.414 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds