Wall clock time and date at job start Sat Apr 11 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36943 * 119.99927 * 2 1 4 4 H 1.08002 * 120.00017 * 142.33607 * 3 2 1 5 5 C 1.38805 * 119.99873 * 322.33572 * 3 2 1 6 6 N 1.31625 * 119.99872 * 157.81894 * 5 3 2 7 7 Si 1.86797 * 120.00355 * 337.82086 * 5 3 2 8 8 H 1.48499 * 109.47138 * 95.34937 * 7 5 3 9 9 H 1.48494 * 109.47457 * 215.35210 * 7 5 3 10 10 H 1.48505 * 109.46739 * 335.35512 * 7 5 3 11 11 C 1.46502 * 120.00110 * 179.97438 * 2 1 3 12 12 H 1.08999 * 110.64055 * 176.85888 * 11 2 1 13 13 C 1.55160 * 110.71935 * 299.99746 * 11 2 1 14 14 C 1.54911 * 101.57792 * 153.86729 * 13 11 2 15 15 N 1.47428 * 104.83438 * 322.99061 * 14 13 11 16 16 C 1.34777 * 125.65186 * 203.86626 * 15 14 13 17 17 O 1.21575 * 119.99865 * 355.08612 * 16 15 14 18 18 C 1.47647 * 120.00073 * 175.09428 * 16 15 14 19 19 C 1.40244 * 120.49748 * 187.37059 * 18 16 15 20 20 C 1.38003 * 118.36256 * 179.80106 * 19 18 16 21 21 C 1.39180 * 119.25054 * 0.45033 * 20 19 18 22 22 N 1.39416 * 119.52708 * 179.76800 * 21 20 19 23 23 C 1.36714 * 125.68921 * 359.71166 * 22 21 20 24 24 C 1.34773 * 108.19093 * 179.89230 * 23 22 21 25 25 C 1.41023 * 107.49523 * 0.37024 * 24 23 22 26 26 C 1.34771 * 107.50146 * 359.77042 * 25 24 23 27 27 N 1.32447 * 120.94235 * 359.79274 * 21 20 19 28 28 C 1.31627 * 121.79779 * 359.97300 * 27 21 20 29 29 C 1.47028 * 108.70027 * 24.12941 * 15 14 13 30 30 H 1.09000 * 109.46941 * 272.68175 * 1 2 3 31 31 H 1.08997 * 109.47391 * 32.68369 * 1 2 3 32 32 H 1.08998 * 109.47246 * 152.68222 * 1 2 3 33 33 H 0.97002 * 119.99404 * 180.02562 * 6 5 3 34 34 H 1.09002 * 110.99866 * 35.79584 * 13 11 2 35 35 H 1.08996 * 111.03962 * 271.95203 * 13 11 2 36 36 H 1.08999 * 110.36412 * 204.16020 * 14 13 11 37 37 H 1.08993 * 110.46331 * 81.87633 * 14 13 11 38 38 H 1.08007 * 120.82140 * 0.02562 * 19 18 16 39 39 H 1.07998 * 120.37276 * 180.20249 * 20 19 18 40 40 H 1.08006 * 125.90420 * 0.02562 * 23 22 21 41 41 H 1.07994 * 126.24936 * 180.16594 * 24 23 22 42 42 H 1.07996 * 126.24688 * 179.74927 * 25 24 23 43 43 H 1.08006 * 125.90622 * 179.97438 * 26 25 24 44 44 H 1.08007 * 119.67909 * 180.02562 * 28 27 21 45 45 H 1.08998 * 109.88268 * 118.35738 * 29 15 14 46 46 H 1.09002 * 109.88382 * 239.52351 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.0609 1.2834 0.5715 5 6 1.6725 2.2628 -0.7345 6 7 2.0375 3.4876 -0.4196 7 14 0.5125 1.9738 -2.1699 8 1 -0.8912 2.1296 -1.7110 9 1 0.7955 2.9618 -3.2417 10 1 0.7111 0.6000 -2.6978 11 6 2.1975 -1.2687 0.0006 12 1 3.2716 -1.0922 -0.0554 13 6 1.8436 -2.1064 1.2578 14 6 2.1173 -3.5471 0.7586 15 7 1.6779 -3.5488 -0.6486 16 6 1.2991 -4.6343 -1.3520 17 8 1.3868 -5.7409 -0.8561 18 6 0.7777 -4.4796 -2.7246 19 6 0.2380 -5.5783 -3.4090 20 6 -0.2405 -5.3830 -4.6886 21 6 -0.1638 -4.1149 -5.2572 22 7 -0.6410 -3.9122 -6.5514 23 6 -1.1945 -4.8686 -7.3563 24 6 -1.5343 -4.2898 -8.5250 25 6 -1.1716 -2.9294 -8.4456 26 6 -0.6280 -2.7252 -7.2294 27 7 0.3564 -3.0982 -4.5865 28 6 0.8200 -3.2392 -3.3627 29 6 1.7274 -2.1711 -1.1596 30 1 -0.3633 0.0481 1.0265 31 1 -0.3634 0.8649 -0.5549 32 1 -0.3633 -0.9130 -0.4716 33 1 1.7037 4.2401 -0.9327 34 1 0.7957 -1.9794 1.5295 35 1 2.4954 -1.8521 2.0936 36 1 1.5375 -4.2657 1.3379 37 1 3.1805 -3.7776 0.8243 38 1 0.1944 -6.5525 -2.9447 39 1 -0.6659 -6.2057 -5.2441 40 1 -1.3371 -5.9079 -7.0992 41 1 -1.9966 -4.7793 -9.3694 42 1 -1.3047 -2.1868 -9.2184 43 1 -0.2475 -1.7862 -6.8552 44 1 1.2368 -2.3865 -2.8471 45 1 2.4333 -2.1080 -1.9878 46 1 0.7358 -1.8627 -1.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972568172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:36 Heat of formation + Delta-G solvation = 110.687358 kcal Electronic energy + Delta-G solvation = -29390.688240 eV Core-core repulsion = 25476.294322 eV Total energy + Delta-G solvation = -3914.393918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.86703 -41.78855 -40.33483 -39.06100 -36.66301 -34.71024 -33.92879 -33.75522 -32.28653 -30.54308 -30.00585 -29.51498 -28.12697 -26.41084 -25.19422 -24.83843 -23.59035 -21.58678 -21.42416 -21.11860 -20.99987 -19.61950 -19.06868 -18.71388 -17.85721 -17.56722 -16.96521 -16.68577 -16.49248 -16.31258 -15.75495 -15.35334 -15.06204 -14.84691 -14.66786 -14.57682 -14.54507 -14.37204 -14.36619 -14.26564 -14.02725 -13.46645 -13.36003 -13.31528 -13.15810 -13.03172 -12.56045 -12.38626 -12.22931 -12.06748 -11.63901 -11.63279 -11.34937 -11.30409 -11.04707 -10.80460 -10.64811 -9.83025 -9.38875 -9.31073 -8.81129 -8.21991 -5.62510 -0.83662 -0.07858 1.05311 1.30325 1.43231 1.45737 1.50571 1.74187 1.77310 1.98553 2.39730 2.59547 2.98586 3.05698 3.09947 3.38679 3.48090 3.55761 3.67263 3.72207 3.84733 4.11601 4.14195 4.21617 4.25314 4.31963 4.35294 4.41348 4.46262 4.54736 4.60381 4.64840 4.72854 4.79088 4.81244 4.88575 4.98845 5.08071 5.15337 5.19069 5.22715 5.26483 5.34218 5.79411 5.90985 5.98038 6.18574 6.20637 6.27076 6.60903 6.87685 6.93204 7.57541 7.99222 8.96935 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009753 B = 0.003942 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.184139 B = 7101.733911 C = 9710.858553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.605 5.605 3 C -0.259 4.259 4 H 0.053 0.947 5 C -0.013 4.013 6 N -0.944 5.944 7 Si 0.938 3.062 8 H -0.281 1.281 9 H -0.313 1.313 10 H -0.252 1.252 11 C 0.164 3.836 12 H 0.090 0.910 13 C -0.138 4.138 14 C 0.113 3.887 15 N -0.605 5.605 16 C 0.582 3.418 17 O -0.566 6.566 18 C -0.214 4.214 19 C 0.016 3.984 20 C -0.183 4.183 21 C 0.356 3.644 22 N -0.407 5.407 23 C -0.017 4.017 24 C -0.186 4.186 25 C -0.194 4.194 26 C -0.022 4.022 27 N -0.533 5.533 28 C 0.130 3.870 29 C 0.067 3.933 30 H 0.030 0.970 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.175 0.825 39 H 0.186 0.814 40 H 0.203 0.797 41 H 0.171 0.829 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.195 0.805 45 H 0.085 0.915 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -20.967 -10.543 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.328 5.328 3 C -0.389 4.389 4 H 0.070 0.930 5 C -0.210 4.210 6 N -0.587 5.587 7 Si 0.767 3.233 8 H -0.209 1.209 9 H -0.242 1.242 10 H -0.175 1.175 11 C 0.056 3.944 12 H 0.108 0.892 13 C -0.177 4.177 14 C -0.008 4.008 15 N -0.337 5.337 16 C 0.372 3.628 17 O -0.447 6.447 18 C -0.220 4.220 19 C -0.010 4.010 20 C -0.204 4.204 21 C 0.128 3.872 22 N -0.084 5.084 23 C -0.141 4.141 24 C -0.210 4.210 25 C -0.218 4.218 26 C -0.147 4.147 27 N -0.245 5.245 28 C -0.027 4.027 29 C -0.058 4.058 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.192 0.808 39 H 0.204 0.796 40 H 0.220 0.780 41 H 0.189 0.811 42 H 0.175 0.825 43 H 0.176 0.824 44 H 0.210 0.790 45 H 0.103 0.897 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.147 -20.649 -10.501 23.967 hybrid contribution -0.392 0.320 -0.278 0.577 sum -6.539 -20.329 -10.779 23.921 Atomic orbital electron populations 1.21376 0.83932 0.99147 0.99356 1.44055 1.01099 1.01400 1.86226 1.18673 1.08747 0.88224 1.23213 0.92961 1.26026 1.00270 0.94958 0.99751 1.69980 1.48910 0.98847 1.41007 0.85984 0.78617 0.78209 0.80482 1.20908 1.24206 1.17544 1.21684 0.96830 0.83964 0.91896 0.89153 1.23218 1.02924 0.92724 0.98866 1.22340 1.00805 0.97817 0.79868 1.48376 1.64477 1.06744 1.14064 1.17643 0.77322 0.83035 0.84831 1.90750 1.57379 1.24955 1.71606 1.20886 1.08287 0.96444 0.96362 1.21801 0.88167 0.99128 0.91884 1.21829 1.05285 0.96528 0.96781 1.18944 0.92073 0.91018 0.85189 1.41708 1.46860 1.10543 1.09261 1.22607 1.04247 0.95920 0.91317 1.21460 1.06360 0.94327 0.98819 1.21434 1.05074 0.98297 0.97006 1.22259 1.07887 0.90365 0.94229 1.67138 1.14134 1.33256 1.10007 1.24603 0.91464 0.98141 0.88536 1.23211 1.01785 0.81306 0.99458 0.95187 0.95810 0.92213 0.92775 0.90944 0.88696 0.89949 0.89770 0.80750 0.79642 0.77977 0.81140 0.82469 0.82417 0.78951 0.89689 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.08 8.43 127.77 1.08 5.16 16 2 N -0.60 -25.18 2.49 -696.17 -1.73 -26.92 16 3 C -0.26 -13.49 9.86 84.03 0.83 -12.66 16 4 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 5 C -0.01 -0.70 5.32 84.86 0.45 -0.25 16 6 N -0.94 -56.74 13.97 21.65 0.30 -56.44 16 7 Si 0.94 44.31 25.04 68.60 1.72 46.03 16 8 H -0.28 -12.94 6.67 99.48 0.66 -12.28 16 9 H -0.31 -15.35 7.11 99.48 0.71 -14.64 16 10 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 11 C 0.16 5.33 3.45 46.18 0.16 5.49 16 12 H 0.09 2.99 7.95 -2.39 -0.02 2.98 16 13 C -0.14 -3.61 6.66 31.99 0.21 -3.40 16 14 C 0.11 2.70 6.89 86.86 0.60 3.30 16 15 N -0.60 -16.26 3.33 -824.42 -2.74 -19.01 16 16 C 0.58 16.41 7.81 86.73 0.68 17.08 16 17 O -0.57 -18.16 16.74 -3.95 -0.07 -18.22 16 18 C -0.21 -5.43 5.89 -19.99 -0.12 -5.54 16 19 C 0.02 0.33 9.70 22.70 0.22 0.55 16 20 C -0.18 -3.22 9.46 22.44 0.21 -3.01 16 21 C 0.36 8.62 7.48 132.92 0.99 9.61 16 22 N -0.41 -9.27 2.96 -352.10 -1.04 -10.32 16 23 C -0.02 -0.28 10.71 83.14 0.89 0.61 16 24 C -0.19 -3.01 10.86 22.16 0.24 -2.77 16 25 C -0.19 -3.86 10.86 22.16 0.24 -3.62 16 26 C -0.02 -0.55 10.99 83.14 0.91 0.37 16 27 N -0.53 -15.49 9.80 -191.88 -1.88 -17.37 16 28 C 0.13 3.61 9.78 85.04 0.83 4.44 16 29 C 0.07 1.92 4.42 86.73 0.38 2.30 16 30 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.02 1.02 3.14 -2.39 -0.01 1.01 16 32 H 0.06 1.96 6.12 -2.39 -0.01 1.95 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.07 1.98 7.34 -2.39 -0.02 1.96 16 35 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.18 2.78 7.75 -2.91 -0.02 2.76 16 39 H 0.19 1.70 6.66 -2.91 -0.02 1.68 16 40 H 0.20 1.60 6.96 -2.91 -0.02 1.58 16 41 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 42 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.16 4.08 8.03 -2.91 -0.02 4.05 16 44 H 0.19 5.52 2.78 -6.38 -0.02 5.51 16 45 H 0.09 2.35 6.81 -2.39 -0.02 2.33 16 46 H 0.08 2.31 4.51 -2.39 -0.01 2.30 16 Total: -1.00 -69.43 366.79 4.34 -65.09 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.97 Total: 19.49 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 8.81 Total: 17.66 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -7.10 Total: -130.05 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.07 Total: -18.22 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.72 Total: 46.03 kcal Total: -69.43 4.34 -65.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972568172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.780 kcal (2) G-P(sol) polarization free energy of solvation -69.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds