Wall clock time and date at job start Sat Apr 11 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 119.99651 * 2 1 4 4 H 1.08001 * 119.99915 * 154.66969 * 3 2 1 5 5 C 1.38809 * 120.00215 * 334.39678 * 3 2 1 6 6 N 1.31630 * 119.99681 * 354.45592 * 5 3 2 7 7 Si 1.86793 * 120.00265 * 174.45605 * 5 3 2 8 8 H 1.48506 * 109.47277 * 89.99802 * 7 5 3 9 9 H 1.48496 * 109.47319 * 209.99892 * 7 5 3 10 10 H 1.48498 * 109.47064 * 330.00247 * 7 5 3 11 11 C 1.46502 * 120.00366 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63811 * 183.13777 * 11 2 1 13 13 C 1.55154 * 110.71815 * 59.99807 * 11 2 1 14 14 C 1.54907 * 101.57948 * 206.13657 * 13 11 2 15 15 N 1.47422 * 104.83319 * 37.00870 * 14 13 11 16 16 C 1.34780 * 125.64695 * 155.82326 * 15 14 13 17 17 O 1.21550 * 120.00305 * 354.25946 * 16 15 14 18 18 C 1.47860 * 119.99797 * 174.25029 * 16 15 14 19 19 C 1.39621 * 120.11341 * 7.14393 * 18 16 15 20 20 C 1.37968 * 119.98107 * 179.71828 * 19 18 16 21 21 C 1.38267 * 120.22076 * 0.56947 * 20 19 18 22 22 C 1.38901 * 120.22531 * 359.68422 * 21 20 19 23 23 N 1.40256 * 119.99543 * 180.02562 * 22 21 20 24 24 C 1.37105 * 126.47335 * 0.02562 * 23 22 21 25 25 C 1.34657 * 106.83366 * 179.97438 * 24 23 22 26 26 N 1.34124 * 108.19550 * 359.97438 * 25 24 23 27 27 C 1.30513 * 109.35068 * 359.74868 * 26 25 24 28 28 C 1.38580 * 120.01477 * 0.03539 * 22 21 20 29 29 C 1.47020 * 108.70564 * 335.87289 * 15 14 13 30 30 H 1.09004 * 109.47271 * 94.54754 * 1 2 3 31 31 H 1.08996 * 109.46860 * 214.54271 * 1 2 3 32 32 H 1.08995 * 109.47433 * 334.54292 * 1 2 3 33 33 H 0.96996 * 119.99340 * 180.02562 * 6 5 3 34 34 H 1.08996 * 111.00424 * 324.20950 * 13 11 2 35 35 H 1.09003 * 111.00494 * 88.02129 * 13 11 2 36 36 H 1.08998 * 110.36736 * 155.85090 * 14 13 11 37 37 H 1.09002 * 110.36437 * 278.05947 * 14 13 11 38 38 H 1.07995 * 120.00447 * 359.96983 * 19 18 16 39 39 H 1.08000 * 119.88967 * 180.27673 * 20 19 18 40 40 H 1.07994 * 119.89034 * 179.69816 * 21 20 19 41 41 H 1.08004 * 126.58059 * 359.93976 * 24 23 22 42 42 H 1.07995 * 125.89776 * 179.97438 * 25 24 23 43 43 H 1.08000 * 125.71936 * 180.24188 * 27 26 25 44 44 H 1.07996 * 120.11232 * 179.97438 * 28 22 21 45 45 H 1.08997 * 109.88388 * 241.64408 * 29 15 14 46 46 H 1.08994 * 109.88629 * 120.46990 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1518 1.2310 0.4002 5 6 1.5578 2.3291 -0.5195 6 7 0.3841 2.2520 -1.1102 7 14 2.4269 3.9766 -0.3802 8 1 3.2903 4.1831 -1.5707 9 1 1.4181 5.0638 -0.3057 10 1 3.2636 3.9928 0.8466 11 6 2.1976 -1.2687 -0.0006 12 1 3.2718 -1.0921 0.0553 13 6 1.8437 -2.1063 -1.2577 14 6 2.1173 -3.5470 -0.7586 15 7 1.6780 -3.5487 0.6487 16 6 1.2936 -4.6334 1.3502 17 8 1.1906 -5.7104 0.7963 18 6 0.9973 -4.5133 2.7939 19 6 0.9693 -3.2563 3.4010 20 6 0.6869 -3.1469 4.7470 21 6 0.4424 -4.2797 5.5011 22 6 0.4731 -5.5351 4.9074 23 7 0.2239 -6.6810 5.6768 24 6 -0.0626 -6.7162 7.0171 25 6 -0.2304 -8.0112 7.3460 26 7 -0.0529 -8.7504 6.2410 27 6 0.2141 -7.9649 5.2335 28 6 0.7502 -5.6556 3.5549 29 6 1.7275 -2.1711 1.1597 30 1 -0.3634 -0.0815 -1.0245 31 1 -0.3633 -0.8465 0.5827 32 1 -0.3634 0.9278 0.4417 33 1 -0.0293 3.0508 -1.4735 34 1 0.7958 -1.9794 -1.5294 35 1 2.4954 -1.8513 -2.0934 36 1 1.5377 -4.2657 -1.3378 37 1 3.1808 -3.7762 -0.8260 38 1 1.1648 -2.3697 2.8162 39 1 0.6612 -2.1735 5.2142 40 1 0.2266 -4.1883 6.5553 41 1 -0.1386 -5.8682 7.6816 42 1 -0.4669 -8.3892 8.3297 43 1 0.3994 -8.2826 4.2181 44 1 0.7748 -6.6309 3.0917 45 1 2.4334 -2.1080 1.9878 46 1 0.7359 -1.8626 1.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972657982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:45 Heat of formation + Delta-G solvation = 122.334705 kcal Electronic energy + Delta-G solvation = -28913.565207 eV Core-core repulsion = 24999.676355 eV Total energy + Delta-G solvation = -3913.888851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.59299 -40.57760 -38.79336 -37.55303 -34.96186 -34.43799 -32.02584 -31.55132 -30.73219 -29.62460 -29.21960 -28.00019 -26.21341 -25.01958 -23.88590 -23.31938 -22.30270 -21.25528 -20.92184 -19.95429 -19.58772 -18.62055 -17.19308 -16.88923 -16.14489 -16.09898 -15.79039 -15.63891 -15.22910 -14.84368 -14.60853 -14.24495 -14.10995 -13.91353 -13.73165 -13.52606 -13.46996 -13.12335 -12.87810 -12.82293 -12.60796 -12.08112 -11.79441 -11.65944 -11.27538 -11.00563 -10.95109 -10.87913 -10.56655 -10.52326 -10.37353 -10.34909 -10.14289 -10.01835 -9.80909 -9.42188 -9.03568 -8.67754 -8.60591 -8.51024 -6.92738 -5.90808 -3.39951 0.39984 0.68639 1.92167 2.30184 2.74032 2.85796 2.99726 3.27739 3.34762 3.35642 3.57933 4.16715 4.30912 4.34896 4.38839 4.48145 4.63633 4.80681 4.85347 4.98959 5.04576 5.09934 5.20562 5.28577 5.31763 5.38305 5.45824 5.47645 5.53913 5.64445 5.70949 5.83520 5.94134 5.99473 6.05379 6.07543 6.21884 6.26145 6.39455 6.43954 6.50777 6.66393 6.75463 6.91942 7.23439 7.52989 7.58900 7.66498 7.69111 8.11613 8.24860 9.06254 9.66298 10.15548 11.15100 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.002450 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.441290 B =11425.818634 C =12478.399394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.586 5.586 3 C -0.263 4.263 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.170 3.830 12 H 0.082 0.918 13 C -0.152 4.152 14 C 0.107 3.893 15 N -0.602 5.602 16 C 0.570 3.430 17 O -0.545 6.545 18 C -0.099 4.099 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.111 4.111 22 C 0.117 3.883 23 N -0.408 5.408 24 C -0.055 4.055 25 C -0.024 4.024 26 N -0.487 5.487 27 C 0.191 3.809 28 C -0.077 4.077 29 C 0.062 3.938 30 H 0.019 0.981 31 H -0.006 1.006 32 H 0.066 0.934 33 H 0.255 0.745 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.177 0.823 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.210 0.790 44 H 0.143 0.857 45 H 0.074 0.926 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 -12.032 12.469 17.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.307 5.307 3 C -0.392 4.392 4 H 0.088 0.912 5 C -0.192 4.192 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.213 1.213 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.059 3.941 12 H 0.100 0.900 13 C -0.192 4.192 14 C -0.016 4.016 15 N -0.334 5.334 16 C 0.359 3.641 17 O -0.425 6.425 18 C -0.102 4.102 19 C -0.143 4.143 20 C -0.116 4.116 21 C -0.131 4.131 22 C 0.025 3.975 23 N -0.087 5.087 24 C -0.185 4.185 25 C -0.171 4.171 26 N -0.204 5.204 27 C -0.090 4.090 28 C -0.098 4.098 29 C -0.062 4.062 30 H 0.037 0.963 31 H 0.012 0.988 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.193 0.807 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.195 0.805 42 H 0.191 0.809 43 H 0.226 0.774 44 H 0.161 0.839 45 H 0.092 0.908 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.388 -13.276 12.078 17.952 hybrid contribution 0.364 1.826 0.094 1.865 sum 0.752 -11.449 12.172 16.727 Atomic orbital electron populations 1.20870 0.82378 0.97513 0.97880 1.43886 1.01872 0.99770 1.85146 1.19213 0.99765 0.85800 1.34435 0.91168 1.25129 0.97341 0.98950 0.97792 1.70046 1.16330 1.28086 1.40489 0.86210 0.78677 0.83385 0.77939 1.21295 1.21568 1.20423 1.21379 0.96559 0.86065 0.90063 0.89967 1.23397 1.03111 0.92407 1.00313 1.22307 0.99336 0.99098 0.80825 1.48319 1.64203 1.07325 1.13541 1.17768 0.77395 0.83135 0.85768 1.90757 1.53718 1.26926 1.71052 1.19728 1.03297 0.93535 0.93662 1.23187 0.95782 0.99311 0.96028 1.21119 0.98223 0.98460 0.93784 1.21072 1.00822 0.90511 1.00678 1.17638 1.03564 0.85500 0.90786 1.43225 1.50663 1.06449 1.08326 1.22773 1.10532 1.00847 0.84382 1.22369 1.06765 0.89471 0.98461 1.70348 1.18114 1.33048 0.98879 1.25369 1.04495 0.78323 1.00840 1.20820 0.98341 0.99851 0.90751 1.23329 1.02098 0.81044 0.99697 0.96252 0.98805 0.91554 0.93489 0.90545 0.90148 0.90770 0.91468 0.80694 0.84051 0.84894 0.80498 0.80853 0.77364 0.83938 0.90809 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.47 7.95 59.85 0.48 3.95 16 2 N -0.59 -12.80 2.93 -171.39 -0.50 -13.31 16 3 C -0.26 -6.45 9.60 -15.06 -0.14 -6.59 16 4 H 0.07 1.67 7.82 -52.49 -0.41 1.26 16 5 C 0.01 0.17 5.19 -17.43 -0.09 0.08 16 6 N -0.91 -24.43 10.53 55.49 0.58 -23.85 16 7 Si 0.91 20.23 29.56 -169.99 -5.02 15.21 16 8 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 9 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 C 0.17 2.94 3.45 -66.10 -0.23 2.71 16 12 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 13 C -0.15 -2.43 6.66 -24.59 -0.16 -2.59 16 14 C 0.11 1.53 6.94 -2.53 -0.02 1.51 16 15 N -0.60 -8.90 3.33 -175.95 -0.59 -9.48 16 16 C 0.57 8.77 7.81 -12.32 -0.10 8.68 16 17 O -0.55 -9.76 16.60 5.32 0.09 -9.67 16 18 C -0.10 -1.27 5.87 -104.98 -0.62 -1.89 16 19 C -0.13 -1.41 8.61 -39.16 -0.34 -1.75 16 20 C -0.10 -0.90 10.02 -39.67 -0.40 -1.30 16 21 C -0.11 -1.00 9.47 -39.33 -0.37 -1.37 16 22 C 0.12 1.24 6.63 -83.63 -0.55 0.69 16 23 N -0.41 -4.29 2.99 -62.14 -0.19 -4.47 16 24 C -0.06 -0.50 10.85 -16.46 -0.18 -0.68 16 25 C -0.02 -0.24 11.85 -17.82 -0.21 -0.46 16 26 N -0.49 -5.99 11.24 -14.48 -0.16 -6.15 16 27 C 0.19 2.10 11.91 -89.64 -1.07 1.04 16 28 C -0.08 -0.91 9.01 -39.00 -0.35 -1.26 16 29 C 0.06 0.91 4.45 -3.06 -0.01 0.89 16 30 H 0.02 0.46 7.63 -51.93 -0.40 0.07 16 31 H -0.01 -0.12 6.05 -51.93 -0.31 -0.43 16 32 H 0.07 1.62 6.64 -51.93 -0.34 1.27 16 33 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.08 1.36 7.17 -51.93 -0.37 0.99 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.07 1.08 7.98 -51.93 -0.41 0.66 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.18 2.03 2.74 -58.08 -0.16 1.87 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 40 H 0.13 0.86 6.80 -52.49 -0.36 0.50 16 41 H 0.18 1.02 7.14 -52.48 -0.37 0.65 16 42 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.21 1.80 7.06 -52.49 -0.37 1.42 16 44 H 0.14 1.62 6.38 -52.49 -0.33 1.29 16 45 H 0.07 0.95 6.74 -51.93 -0.35 0.60 16 46 H 0.09 1.31 4.49 -51.93 -0.23 1.08 16 LS Contribution 368.08 15.07 5.55 5.55 Total: -1.00 -30.83 368.08 -10.28 -41.11 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -5.67 Total: 3.41 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.37 Total: 1.66 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.85 Total: -57.26 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.83 -10.28 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972657982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.444 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds