Wall clock time and date at job start Sat Apr 11 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36943 * 119.99651 * 2 1 4 4 H 1.08001 * 119.99915 * 154.66969 * 3 2 1 5 5 C 1.38809 * 120.00215 * 334.39678 * 3 2 1 6 6 N 1.31630 * 119.99681 * 354.45592 * 5 3 2 7 7 Si 1.86793 * 120.00265 * 174.45605 * 5 3 2 8 8 H 1.48506 * 109.47277 * 89.99802 * 7 5 3 9 9 H 1.48496 * 109.47319 * 209.99892 * 7 5 3 10 10 H 1.48498 * 109.47064 * 330.00247 * 7 5 3 11 11 C 1.46502 * 120.00366 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63811 * 183.13777 * 11 2 1 13 13 C 1.55154 * 110.71815 * 59.99807 * 11 2 1 14 14 C 1.54907 * 101.57948 * 206.13657 * 13 11 2 15 15 N 1.47422 * 104.83319 * 37.00870 * 14 13 11 16 16 C 1.34780 * 125.64695 * 155.82326 * 15 14 13 17 17 O 1.21550 * 120.00305 * 354.25946 * 16 15 14 18 18 C 1.47860 * 119.99797 * 174.25029 * 16 15 14 19 19 C 1.39621 * 120.11341 * 7.14393 * 18 16 15 20 20 C 1.37968 * 119.98107 * 179.71828 * 19 18 16 21 21 C 1.38267 * 120.22076 * 0.56947 * 20 19 18 22 22 C 1.38901 * 120.22531 * 359.68422 * 21 20 19 23 23 N 1.40256 * 119.99543 * 180.02562 * 22 21 20 24 24 C 1.37105 * 126.47335 * 0.02562 * 23 22 21 25 25 C 1.34657 * 106.83366 * 179.97438 * 24 23 22 26 26 N 1.34124 * 108.19550 * 359.97438 * 25 24 23 27 27 C 1.30513 * 109.35068 * 359.74868 * 26 25 24 28 28 C 1.38580 * 120.01477 * 0.03539 * 22 21 20 29 29 C 1.47020 * 108.70564 * 335.87289 * 15 14 13 30 30 H 1.09004 * 109.47271 * 94.54754 * 1 2 3 31 31 H 1.08996 * 109.46860 * 214.54271 * 1 2 3 32 32 H 1.08995 * 109.47433 * 334.54292 * 1 2 3 33 33 H 0.96996 * 119.99340 * 180.02562 * 6 5 3 34 34 H 1.08996 * 111.00424 * 324.20950 * 13 11 2 35 35 H 1.09003 * 111.00494 * 88.02129 * 13 11 2 36 36 H 1.08998 * 110.36736 * 155.85090 * 14 13 11 37 37 H 1.09002 * 110.36437 * 278.05947 * 14 13 11 38 38 H 1.07995 * 120.00447 * 359.96983 * 19 18 16 39 39 H 1.08000 * 119.88967 * 180.27673 * 20 19 18 40 40 H 1.07994 * 119.89034 * 179.69816 * 21 20 19 41 41 H 1.08004 * 126.58059 * 359.93976 * 24 23 22 42 42 H 1.07995 * 125.89776 * 179.97438 * 25 24 23 43 43 H 1.08000 * 125.71936 * 180.24188 * 27 26 25 44 44 H 1.07996 * 120.11232 * 179.97438 * 28 22 21 45 45 H 1.08997 * 109.88388 * 241.64408 * 29 15 14 46 46 H 1.08994 * 109.88629 * 120.46990 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1518 1.2310 0.4002 5 6 1.5578 2.3291 -0.5195 6 7 0.3841 2.2520 -1.1102 7 14 2.4269 3.9766 -0.3802 8 1 3.2903 4.1831 -1.5707 9 1 1.4181 5.0638 -0.3057 10 1 3.2636 3.9928 0.8466 11 6 2.1976 -1.2687 -0.0006 12 1 3.2718 -1.0921 0.0553 13 6 1.8437 -2.1063 -1.2577 14 6 2.1173 -3.5470 -0.7586 15 7 1.6780 -3.5487 0.6487 16 6 1.2936 -4.6334 1.3502 17 8 1.1906 -5.7104 0.7963 18 6 0.9973 -4.5133 2.7939 19 6 0.9693 -3.2563 3.4010 20 6 0.6869 -3.1469 4.7470 21 6 0.4424 -4.2797 5.5011 22 6 0.4731 -5.5351 4.9074 23 7 0.2239 -6.6810 5.6768 24 6 -0.0626 -6.7162 7.0171 25 6 -0.2304 -8.0112 7.3460 26 7 -0.0529 -8.7504 6.2410 27 6 0.2141 -7.9649 5.2335 28 6 0.7502 -5.6556 3.5549 29 6 1.7275 -2.1711 1.1597 30 1 -0.3634 -0.0815 -1.0245 31 1 -0.3633 -0.8465 0.5827 32 1 -0.3634 0.9278 0.4417 33 1 -0.0293 3.0508 -1.4735 34 1 0.7958 -1.9794 -1.5294 35 1 2.4954 -1.8513 -2.0934 36 1 1.5377 -4.2657 -1.3378 37 1 3.1808 -3.7762 -0.8260 38 1 1.1648 -2.3697 2.8162 39 1 0.6612 -2.1735 5.2142 40 1 0.2266 -4.1883 6.5553 41 1 -0.1386 -5.8682 7.6816 42 1 -0.4669 -8.3892 8.3297 43 1 0.3994 -8.2826 4.2181 44 1 0.7748 -6.6309 3.0917 45 1 2.4334 -2.1080 1.9878 46 1 0.7359 -1.8626 1.4908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972657982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:44 Heat of formation + Delta-G solvation = 106.829125 kcal Electronic energy + Delta-G solvation = -28914.237579 eV Core-core repulsion = 24999.676355 eV Total energy + Delta-G solvation = -3914.561224 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.34702 -41.67445 -39.77370 -38.86285 -36.55197 -35.30642 -33.44323 -32.66701 -31.84074 -30.52798 -30.22256 -29.24758 -28.03936 -26.17321 -24.90099 -24.50828 -23.48432 -22.11102 -21.78661 -21.03758 -20.88456 -19.55282 -18.90240 -17.90417 -17.51602 -17.04985 -16.80749 -16.59721 -16.42568 -16.00113 -15.71812 -15.38197 -15.04394 -14.96965 -14.88752 -14.66791 -14.46310 -14.33127 -14.21617 -14.00316 -13.81000 -13.37656 -13.04205 -12.83670 -12.69580 -12.57109 -12.48765 -12.28994 -12.04948 -11.89474 -11.79192 -11.72977 -11.47060 -11.16868 -11.09364 -10.57039 -10.25954 -9.78642 -9.70522 -9.38021 -8.73644 -7.82014 -5.31421 -0.43215 -0.13671 1.15676 1.51824 1.51932 1.53992 1.61452 1.74517 1.88323 2.07301 2.53249 2.68954 3.18135 3.34341 3.57197 3.61742 3.68053 3.72537 3.74693 3.89708 3.97218 4.03538 4.10579 4.27367 4.28371 4.38369 4.41833 4.50971 4.57459 4.61377 4.72220 4.76968 4.81501 4.94095 4.95305 5.05915 5.13535 5.24088 5.24560 5.32163 5.36207 5.40310 5.54779 5.68460 5.72304 5.78723 6.15834 6.33538 6.40615 6.94030 6.94256 7.18076 7.86575 8.31623 9.22733 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019420 B = 0.002450 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.441290 B =11425.818634 C =12478.399394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.599 5.599 3 C -0.259 4.259 4 H 0.080 0.920 5 C -0.050 4.050 6 N -0.939 5.939 7 Si 0.967 3.033 8 H -0.290 1.290 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.163 3.837 12 H 0.090 0.910 13 C -0.144 4.144 14 C 0.112 3.888 15 N -0.603 5.603 16 C 0.567 3.433 17 O -0.579 6.579 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.097 4.097 22 C 0.113 3.887 23 N -0.412 5.412 24 C -0.047 4.047 25 C -0.044 4.044 26 N -0.519 5.519 27 C 0.173 3.827 28 C -0.086 4.086 29 C 0.078 3.922 30 H -0.010 1.010 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.247 0.753 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.172 0.828 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.214 0.786 42 H 0.196 0.804 43 H 0.219 0.781 44 H 0.136 0.864 45 H 0.098 0.902 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 -11.707 15.213 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.320 5.320 3 C -0.389 4.389 4 H 0.098 0.902 5 C -0.245 4.245 6 N -0.586 5.586 7 Si 0.796 3.204 8 H -0.217 1.217 9 H -0.226 1.226 10 H -0.190 1.190 11 C 0.054 3.946 12 H 0.108 0.892 13 C -0.184 4.184 14 C -0.010 4.010 15 N -0.335 5.335 16 C 0.358 3.642 17 O -0.461 6.461 18 C -0.121 4.121 19 C -0.145 4.145 20 C -0.109 4.109 21 C -0.117 4.117 22 C 0.021 3.979 23 N -0.091 5.091 24 C -0.177 4.177 25 C -0.190 4.190 26 N -0.237 5.237 27 C -0.108 4.108 28 C -0.107 4.107 29 C -0.045 4.045 30 H 0.008 0.992 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.189 0.811 39 H 0.189 0.811 40 H 0.184 0.816 41 H 0.231 0.769 42 H 0.213 0.787 43 H 0.235 0.765 44 H 0.154 0.846 45 H 0.116 0.884 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.370 -12.974 14.843 19.761 hybrid contribution 0.075 1.630 -0.691 1.772 sum 1.445 -11.344 14.151 18.195 Atomic orbital electron populations 1.20546 0.82910 0.97195 0.96298 1.44010 1.01819 1.00783 1.85403 1.19589 0.99880 0.86699 1.32710 0.90211 1.25827 0.98121 1.02035 0.98511 1.70219 1.17843 1.28172 1.42323 0.85267 0.77396 0.79670 0.78042 1.21684 1.22626 1.18982 1.21576 0.96586 0.84818 0.91642 0.89194 1.23233 1.01784 0.93421 0.99964 1.22270 1.00422 0.97579 0.80718 1.48354 1.64133 1.07397 1.13599 1.18195 0.76594 0.82551 0.86828 1.90732 1.55279 1.28074 1.72008 1.19561 1.05588 0.94722 0.92253 1.23138 0.96090 0.98179 0.97097 1.21443 0.96751 0.99919 0.92765 1.21461 0.98662 0.89369 1.02214 1.17740 1.03595 0.86269 0.90340 1.43321 1.50649 1.06154 1.08941 1.23379 1.08691 1.01696 0.83933 1.22870 1.07187 0.90023 0.98884 1.70321 1.19017 1.34293 1.00022 1.25625 1.05070 0.78831 1.01285 1.20810 0.98859 0.99391 0.91594 1.23157 1.02440 0.80105 0.98843 0.99188 0.95886 0.94282 0.94377 0.92696 0.89836 0.91176 0.89544 0.81105 0.81098 0.81574 0.76891 0.78717 0.76507 0.84627 0.88385 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 7.79 7.95 127.77 1.02 8.80 16 2 N -0.60 -25.82 2.93 -696.14 -2.04 -27.87 16 3 C -0.26 -12.49 9.60 84.03 0.81 -11.68 16 4 H 0.08 3.64 7.82 -2.91 -0.02 3.61 16 5 C -0.05 -2.55 5.19 84.86 0.44 -2.11 16 6 N -0.94 -51.84 10.53 21.65 0.23 -51.62 16 7 Si 0.97 41.55 29.56 68.60 2.03 43.58 16 8 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 9 H -0.30 -13.22 7.11 99.48 0.71 -12.52 16 10 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 11 C 0.16 5.41 3.45 46.18 0.16 5.57 16 12 H 0.09 2.87 7.94 -2.39 -0.02 2.85 16 13 C -0.14 -4.53 6.66 31.98 0.21 -4.32 16 14 C 0.11 3.11 6.94 86.85 0.60 3.71 16 15 N -0.60 -17.16 3.33 -828.87 -2.76 -19.91 16 16 C 0.57 17.16 7.81 86.79 0.68 17.84 16 17 O -0.58 -20.94 16.60 -3.87 -0.06 -21.01 16 18 C -0.12 -2.89 5.87 -20.10 -0.12 -3.01 16 19 C -0.13 -2.54 8.61 22.54 0.19 -2.34 16 20 C -0.09 -1.30 10.02 22.21 0.22 -1.08 16 21 C -0.10 -1.34 9.47 22.44 0.21 -1.13 16 22 C 0.11 2.12 6.63 38.03 0.25 2.37 16 23 N -0.41 -7.83 2.99 -350.50 -1.05 -8.88 16 24 C -0.05 -0.71 10.85 83.05 0.90 0.19 16 25 C -0.04 -0.81 11.85 83.52 0.99 0.18 16 26 N -0.52 -12.46 11.24 -199.72 -2.25 -14.70 16 27 C 0.17 3.73 11.91 180.01 2.14 5.87 16 28 C -0.09 -1.95 9.01 22.65 0.20 -1.75 16 29 C 0.08 2.12 4.45 86.73 0.39 2.50 16 30 H -0.01 -0.51 7.63 -2.38 -0.02 -0.53 16 31 H 0.02 0.87 6.05 -2.39 -0.01 0.85 16 32 H 0.04 1.93 6.64 -2.39 -0.02 1.91 16 33 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 34 H 0.05 1.98 7.17 -2.39 -0.02 1.96 16 35 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.07 2.02 7.98 -2.39 -0.02 2.00 16 37 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.17 3.50 2.74 -8.17 -0.02 3.48 16 39 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.17 1.18 6.80 -2.91 -0.02 1.16 16 41 H 0.21 1.40 7.14 -2.91 -0.02 1.37 16 42 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.22 3.88 7.06 -2.91 -0.02 3.85 16 44 H 0.14 3.16 6.38 -2.91 -0.02 3.15 16 45 H 0.10 2.23 6.74 -2.39 -0.02 2.22 16 46 H 0.08 2.36 4.49 -2.39 -0.01 2.35 16 Total: -1.00 -68.12 368.08 4.41 -63.71 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.01 Total: 17.08 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 9.30 Total: 19.62 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -7.87 Total: -122.98 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.06 Total: -21.01 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -68.12 4.41 -63.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972657982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.539 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds