Wall clock time and date at job start Sat Apr 11 2020 06:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00096 * 2 1 4 4 H 1.08004 * 119.99878 * 154.68672 * 3 2 1 5 5 C 1.38815 * 120.00040 * 334.68324 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.13123 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.12837 * 5 3 2 8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3 10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3 11 11 C 1.46504 * 120.00172 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88754 * 176.12280 * 11 2 1 13 13 C 1.55161 * 111.00204 * 300.00133 * 11 2 1 14 14 C 1.54330 * 102.93946 * 153.57228 * 13 11 2 15 15 N 1.47016 * 107.27232 * 337.80706 * 14 13 11 16 16 C 1.34781 * 125.64871 * 178.91840 * 15 14 13 17 17 O 1.21516 * 120.00133 * 180.02562 * 16 15 14 18 18 C 1.48181 * 119.99924 * 0.02562 * 16 15 14 19 19 C 1.39111 * 119.69368 * 179.72752 * 18 16 15 20 20 C 1.39297 * 118.97388 * 179.76092 * 19 18 16 21 21 N 1.39913 * 120.81995 * 180.21570 * 20 19 18 22 22 C 1.36624 * 125.67648 * 359.97438 * 21 20 19 23 23 C 1.34815 * 108.19394 * 179.83085 * 22 21 20 24 24 C 1.40980 * 107.47916 * 0.41948 * 23 22 21 25 25 C 1.34815 * 107.47956 * 359.74005 * 24 23 22 26 26 C 1.39281 * 118.35501 * 0.50560 * 20 19 18 27 27 C 1.38331 * 119.27626 * 359.73410 * 26 20 19 28 28 N 1.31602 * 120.97948 * 0.02562 * 27 26 20 29 29 C 1.47423 * 108.70555 * 358.94054 * 15 14 13 30 30 H 1.08998 * 109.46764 * 84.49275 * 1 2 3 31 31 H 1.09001 * 109.47034 * 204.49381 * 1 2 3 32 32 H 1.09000 * 109.46970 * 324.49152 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08996 * 110.71861 * 271.93266 * 13 11 2 35 35 H 1.08994 * 110.72067 * 35.03763 * 13 11 2 36 36 H 1.08999 * 109.87780 * 97.22592 * 14 13 11 37 37 H 1.08997 * 109.88412 * 218.23195 * 14 13 11 38 38 H 1.07997 * 120.51188 * 359.97438 * 19 18 16 39 39 H 1.08000 * 125.90324 * 359.95298 * 22 21 20 40 40 H 1.07993 * 126.26405 * 180.19100 * 23 22 21 41 41 H 1.08002 * 126.26094 * 179.70079 * 24 23 22 42 42 H 1.08005 * 125.89804 * 180.02562 * 25 24 23 43 43 H 1.07993 * 120.36213 * 179.71309 * 26 20 19 44 44 H 1.07996 * 119.50955 * 179.97438 * 27 26 20 45 45 H 1.08997 * 110.36917 * 265.29323 * 29 15 14 46 46 H 1.09002 * 110.37069 * 142.96196 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1520 1.2308 0.3999 5 6 1.5556 2.3304 -0.5141 6 7 0.3063 2.2947 -0.9266 7 14 2.5293 3.9210 -0.6202 8 1 3.9007 3.6977 -0.0962 9 1 2.6066 4.3604 -2.0367 10 1 1.8549 4.9690 0.1871 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0973 -0.0684 13 6 1.8484 -2.1119 1.2554 14 6 2.1063 -3.5582 0.7826 15 7 2.0264 -3.5584 -0.6853 16 6 2.2142 -4.6292 -1.4821 17 8 2.1238 -4.5123 -2.6882 18 6 2.5309 -5.9489 -0.8872 19 6 2.7178 -7.0510 -1.7152 20 6 3.0199 -8.2833 -1.1404 21 7 3.2200 -9.4161 -1.9369 22 6 3.1480 -9.4540 -3.3007 23 6 3.4035 -10.7158 -3.7008 24 6 3.6326 -11.4886 -2.5441 25 6 3.5143 -10.6695 -1.4799 26 6 3.1117 -8.3613 0.2472 27 6 2.9073 -7.2214 1.0038 28 7 2.6280 -6.0696 0.4316 29 6 1.7075 -2.1933 -1.1417 30 1 -0.3633 0.0986 -1.0229 31 1 -0.3633 -0.9352 0.4261 32 1 -0.3633 0.8366 0.5969 33 1 -0.1087 3.0943 -1.2862 34 1 2.5043 -1.8553 2.0872 35 1 0.8034 -1.9749 1.5335 36 1 3.0980 -3.8805 1.1000 37 1 1.3499 -4.2243 1.1975 38 1 2.6335 -6.9519 -2.7873 39 1 2.9267 -8.6173 -3.9467 40 1 3.4248 -11.0707 -4.7205 41 1 3.8604 -12.5439 -2.5157 42 1 3.6323 -10.9548 -0.4449 43 1 3.3396 -9.3014 0.7272 44 1 2.9772 -7.2776 2.0800 45 1 0.6326 -2.0826 -1.2846 46 1 2.2392 -1.9684 -2.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972686330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:52 Heat of formation + Delta-G solvation = 106.693557 kcal Electronic energy + Delta-G solvation = -28549.886012 eV Core-core repulsion = 24635.318909 eV Total energy + Delta-G solvation = -3914.567103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.14468 -40.60038 -39.15651 -37.40640 -34.92909 -34.38889 -32.14349 -31.51856 -30.13158 -29.72573 -29.33381 -27.89598 -26.07556 -25.20376 -24.13915 -23.22545 -22.23983 -21.14939 -20.61554 -19.81359 -19.27499 -18.45194 -17.22202 -17.05571 -16.32322 -16.09247 -15.86868 -15.56484 -15.40679 -14.82053 -14.77432 -14.37771 -14.16440 -13.90162 -13.58547 -13.28206 -13.24945 -12.81165 -12.71474 -12.51398 -12.44731 -12.36809 -12.18044 -11.88505 -11.45460 -10.93439 -10.91423 -10.80315 -10.52230 -10.38833 -10.29461 -10.23992 -9.89403 -9.79133 -9.69119 -9.67864 -8.78031 -8.68967 -8.56089 -8.31743 -6.79275 -5.78164 -3.25986 0.19032 0.46968 1.98652 2.24687 2.59273 2.71819 3.02476 3.36133 3.43330 3.44966 3.59524 3.85172 4.09897 4.19541 4.45123 4.51503 4.54570 4.73578 4.84985 4.95996 5.10232 5.13433 5.22509 5.27254 5.33714 5.39196 5.46905 5.62273 5.71575 5.81735 5.84579 5.87764 5.91902 6.04621 6.17667 6.34127 6.45109 6.46595 6.55450 6.63578 6.70931 6.81770 6.90582 6.90852 7.36700 7.45966 7.70698 7.74490 7.82566 8.20347 8.37269 9.20506 9.80438 10.30053 11.26059 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.002097 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.610178 B =13346.066104 C =13850.099490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.259 4.259 4 H 0.071 0.929 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.278 1.278 9 H -0.288 1.288 10 H -0.290 1.290 11 C 0.174 3.826 12 H 0.078 0.922 13 C -0.160 4.160 14 C 0.121 3.879 15 N -0.587 5.587 16 C 0.574 3.426 17 O -0.539 6.539 18 C 0.124 3.876 19 C -0.139 4.139 20 C 0.181 3.819 21 N -0.400 5.400 22 C -0.010 4.010 23 C -0.186 4.186 24 C -0.185 4.185 25 C -0.016 4.016 26 C -0.182 4.182 27 C 0.128 3.872 28 N -0.460 5.460 29 C 0.085 3.915 30 H 0.026 0.974 31 H -0.005 1.005 32 H 0.055 0.945 33 H 0.253 0.747 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.167 0.833 43 H 0.145 0.855 44 H 0.172 0.828 45 H 0.072 0.928 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.403 -26.420 3.386 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.309 5.309 3 C -0.388 4.388 4 H 0.089 0.911 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.736 3.264 8 H -0.203 1.203 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.063 3.937 12 H 0.096 0.904 13 C -0.200 4.200 14 C -0.002 4.002 15 N -0.318 5.318 16 C 0.360 3.640 17 O -0.416 6.416 18 C -0.015 4.015 19 C -0.162 4.162 20 C 0.080 3.920 21 N -0.073 5.073 22 C -0.135 4.135 23 C -0.210 4.210 24 C -0.209 4.209 25 C -0.141 4.141 26 C -0.204 4.204 27 C -0.032 4.032 28 N -0.173 5.173 29 C -0.039 4.039 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.172 0.828 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.163 0.837 44 H 0.189 0.811 45 H 0.090 0.910 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.055 -25.214 3.287 25.925 hybrid contribution 0.541 -0.049 -0.631 0.833 sum 5.597 -25.263 2.656 26.011 Atomic orbital electron populations 1.20897 0.82160 0.95566 0.99496 1.43848 1.02041 0.99793 1.85231 1.19265 0.99391 0.86021 1.34134 0.91105 1.25200 0.96563 0.98929 0.98481 1.70105 1.11160 1.28017 1.45788 0.86157 0.79499 0.83299 0.77460 1.20264 1.21516 1.21680 1.21458 0.96331 0.85666 0.90265 0.90391 1.23332 1.02758 0.93460 1.00450 1.22091 1.01938 0.97468 0.78679 1.48345 1.66099 1.08979 1.08424 1.17382 0.78672 0.82324 0.85644 1.90796 1.53004 1.84353 1.13478 1.21104 0.97089 0.94110 0.89197 1.21743 1.01295 0.90303 1.02815 1.18017 0.97058 0.86191 0.90767 1.41589 1.53260 1.06354 1.06138 1.22101 1.08984 1.00273 0.82191 1.21074 1.07867 0.92816 0.99271 1.21065 1.08166 0.99718 0.91926 1.21945 1.09195 0.82882 1.00106 1.22024 1.04790 1.01940 0.91631 1.22793 0.93044 0.86440 1.00877 1.67985 1.11633 1.26743 1.10898 1.23192 1.01301 0.78903 1.00466 0.95517 0.98624 0.92652 0.93644 0.90675 0.90665 0.91029 0.91346 0.82783 0.81304 0.83806 0.83881 0.81546 0.83704 0.81062 0.90960 0.90676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 7.53 59.85 0.45 4.38 16 2 N -0.59 -14.31 2.97 -171.03 -0.51 -14.82 16 3 C -0.26 -6.93 9.62 -15.06 -0.14 -7.07 16 4 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 5 C 0.01 0.18 5.38 -17.43 -0.09 0.09 16 6 N -0.91 -25.93 10.12 55.49 0.56 -25.37 16 7 Si 0.91 21.54 29.56 -169.99 -5.02 16.52 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 C 0.17 3.46 3.53 -65.78 -0.23 3.23 16 12 H 0.08 1.57 7.96 -51.93 -0.41 1.16 16 13 C -0.16 -2.59 6.50 -24.89 -0.16 -2.75 16 14 C 0.12 1.74 5.40 -3.06 -0.02 1.73 16 15 N -0.59 -9.93 3.33 -171.51 -0.57 -10.50 16 16 C 0.57 9.71 7.84 -12.17 -0.10 9.61 16 17 O -0.54 -10.58 16.58 5.35 0.09 -10.49 16 18 C 0.12 1.67 6.72 -83.05 -0.56 1.11 16 19 C -0.14 -1.64 9.04 -38.86 -0.35 -2.00 16 20 C 0.18 1.79 6.65 -83.39 -0.55 1.23 16 21 N -0.40 -3.80 2.97 -60.74 -0.18 -3.98 16 22 C -0.01 -0.09 10.77 -16.63 -0.18 -0.27 16 23 C -0.19 -1.58 10.86 -39.76 -0.43 -2.02 16 24 C -0.18 -1.45 10.86 -39.76 -0.43 -1.89 16 25 C -0.02 -0.13 10.77 -16.63 -0.18 -0.30 16 26 C -0.18 -1.38 9.53 -39.16 -0.37 -1.75 16 27 C 0.13 1.03 11.17 -17.62 -0.20 0.83 16 28 N -0.46 -5.32 6.84 -9.87 -0.07 -5.38 16 29 C 0.09 1.65 6.46 -2.53 -0.02 1.64 16 30 H 0.03 0.70 7.44 -51.93 -0.39 0.31 16 31 H 0.00 -0.10 6.37 -51.93 -0.33 -0.43 16 32 H 0.05 1.45 7.03 -51.93 -0.36 1.09 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.07 1.28 6.46 -51.93 -0.34 0.94 16 36 H 0.07 0.96 7.41 -51.93 -0.38 0.57 16 37 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 38 H 0.15 1.81 6.42 -52.49 -0.34 1.48 16 39 H 0.17 1.36 7.09 -52.49 -0.37 0.98 16 40 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 42 H 0.17 0.81 7.08 -52.48 -0.37 0.44 16 43 H 0.15 0.66 6.83 -52.49 -0.36 0.30 16 44 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.07 1.49 6.95 -51.93 -0.36 1.13 16 46 H 0.07 1.56 8.04 -51.93 -0.42 1.14 16 LS Contribution 373.37 15.07 5.63 5.63 Total: -1.00 -32.22 373.37 -9.70 -41.92 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.06 Total: 0.67 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -3.57 Total: 5.81 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: -0.76 Total: -60.05 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.22 -9.70 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972686330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.616 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds