Wall clock time and date at job start Sat Apr 11 2020 06:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36937 * 120.00096 * 2 1 4 4 H 1.08004 * 119.99878 * 154.68672 * 3 2 1 5 5 C 1.38815 * 120.00040 * 334.68324 * 3 2 1 6 6 N 1.31622 * 119.99508 * 4.13123 * 5 3 2 7 7 Si 1.86797 * 120.00036 * 184.12837 * 5 3 2 8 8 H 1.48500 * 109.47109 * 0.02562 * 7 5 3 9 9 H 1.48503 * 109.46967 * 119.99833 * 7 5 3 10 10 H 1.48495 * 109.47304 * 239.99984 * 7 5 3 11 11 C 1.46504 * 120.00172 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88754 * 176.12280 * 11 2 1 13 13 C 1.55161 * 111.00204 * 300.00133 * 11 2 1 14 14 C 1.54330 * 102.93946 * 153.57228 * 13 11 2 15 15 N 1.47016 * 107.27232 * 337.80706 * 14 13 11 16 16 C 1.34781 * 125.64871 * 178.91840 * 15 14 13 17 17 O 1.21516 * 120.00133 * 180.02562 * 16 15 14 18 18 C 1.48181 * 119.99924 * 0.02562 * 16 15 14 19 19 C 1.39111 * 119.69368 * 179.72752 * 18 16 15 20 20 C 1.39297 * 118.97388 * 179.76092 * 19 18 16 21 21 N 1.39913 * 120.81995 * 180.21570 * 20 19 18 22 22 C 1.36624 * 125.67648 * 359.97438 * 21 20 19 23 23 C 1.34815 * 108.19394 * 179.83085 * 22 21 20 24 24 C 1.40980 * 107.47916 * 0.41948 * 23 22 21 25 25 C 1.34815 * 107.47956 * 359.74005 * 24 23 22 26 26 C 1.39281 * 118.35501 * 0.50560 * 20 19 18 27 27 C 1.38331 * 119.27626 * 359.73410 * 26 20 19 28 28 N 1.31602 * 120.97948 * 0.02562 * 27 26 20 29 29 C 1.47423 * 108.70555 * 358.94054 * 15 14 13 30 30 H 1.08998 * 109.46764 * 84.49275 * 1 2 3 31 31 H 1.09001 * 109.47034 * 204.49381 * 1 2 3 32 32 H 1.09000 * 109.46970 * 324.49152 * 1 2 3 33 33 H 0.97005 * 119.99235 * 180.02562 * 6 5 3 34 34 H 1.08996 * 110.71861 * 271.93266 * 13 11 2 35 35 H 1.08994 * 110.72067 * 35.03763 * 13 11 2 36 36 H 1.08999 * 109.87780 * 97.22592 * 14 13 11 37 37 H 1.08997 * 109.88412 * 218.23195 * 14 13 11 38 38 H 1.07997 * 120.51188 * 359.97438 * 19 18 16 39 39 H 1.08000 * 125.90324 * 359.95298 * 22 21 20 40 40 H 1.07993 * 126.26405 * 180.19100 * 23 22 21 41 41 H 1.08002 * 126.26094 * 179.70079 * 24 23 22 42 42 H 1.08005 * 125.89804 * 180.02562 * 25 24 23 43 43 H 1.07993 * 120.36213 * 179.71309 * 26 20 19 44 44 H 1.07996 * 119.50955 * 179.97438 * 27 26 20 45 45 H 1.08997 * 110.36917 * 265.29323 * 29 15 14 46 46 H 1.09002 * 110.37069 * 142.96196 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1520 1.2308 0.3999 5 6 1.5556 2.3304 -0.5141 6 7 0.3063 2.2947 -0.9266 7 14 2.5293 3.9210 -0.6202 8 1 3.9007 3.6977 -0.0962 9 1 2.6066 4.3604 -2.0367 10 1 1.8549 4.9690 0.1871 11 6 2.1975 -1.2687 0.0006 12 1 3.2717 -1.0973 -0.0684 13 6 1.8484 -2.1119 1.2554 14 6 2.1063 -3.5582 0.7826 15 7 2.0264 -3.5584 -0.6853 16 6 2.2142 -4.6292 -1.4821 17 8 2.1238 -4.5123 -2.6882 18 6 2.5309 -5.9489 -0.8872 19 6 2.7178 -7.0510 -1.7152 20 6 3.0199 -8.2833 -1.1404 21 7 3.2200 -9.4161 -1.9369 22 6 3.1480 -9.4540 -3.3007 23 6 3.4035 -10.7158 -3.7008 24 6 3.6326 -11.4886 -2.5441 25 6 3.5143 -10.6695 -1.4799 26 6 3.1117 -8.3613 0.2472 27 6 2.9073 -7.2214 1.0038 28 7 2.6280 -6.0696 0.4316 29 6 1.7075 -2.1933 -1.1417 30 1 -0.3633 0.0986 -1.0229 31 1 -0.3633 -0.9352 0.4261 32 1 -0.3633 0.8366 0.5969 33 1 -0.1087 3.0943 -1.2862 34 1 2.5043 -1.8553 2.0872 35 1 0.8034 -1.9749 1.5335 36 1 3.0980 -3.8805 1.1000 37 1 1.3499 -4.2243 1.1975 38 1 2.6335 -6.9519 -2.7873 39 1 2.9267 -8.6173 -3.9467 40 1 3.4248 -11.0707 -4.7205 41 1 3.8604 -12.5439 -2.5157 42 1 3.6323 -10.9548 -0.4449 43 1 3.3396 -9.3014 0.7272 44 1 2.9772 -7.2776 2.0800 45 1 0.6326 -2.0826 -1.2846 46 1 2.2392 -1.9684 -2.0662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972686330.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:07:51 Heat of formation + Delta-G solvation = 88.860084 kcal Electronic energy + Delta-G solvation = -28550.659329 eV Core-core repulsion = 24635.318909 eV Total energy + Delta-G solvation = -3915.340420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.80825 -41.60287 -40.28338 -38.89653 -36.63084 -35.19781 -33.54211 -32.75983 -31.29959 -30.80532 -30.00479 -29.36374 -28.08959 -26.38003 -24.93294 -24.59305 -23.67594 -22.01896 -21.27592 -20.94862 -20.61625 -19.40667 -18.98004 -18.24354 -17.56958 -17.05837 -16.92263 -16.69362 -16.55182 -16.16057 -15.76924 -15.43963 -15.01971 -14.98605 -14.81895 -14.56109 -14.52516 -14.33137 -14.15592 -13.84599 -13.41240 -13.30982 -13.16403 -13.07270 -12.98130 -12.78972 -12.48853 -12.35434 -12.18246 -12.05603 -11.83677 -11.64524 -11.53262 -11.35865 -10.67785 -10.60621 -10.49262 -9.71759 -9.43743 -9.29852 -8.77626 -7.85642 -5.35231 -0.62557 -0.26990 1.26935 1.45668 1.48513 1.52987 1.58207 1.68472 1.84545 1.99622 2.49107 2.70669 2.90847 3.28252 3.38071 3.51096 3.57670 3.73297 3.84408 3.95198 3.97485 4.13029 4.22103 4.24362 4.40156 4.40757 4.46593 4.48720 4.55104 4.65783 4.72211 4.77530 4.83739 4.98775 5.03534 5.15751 5.23883 5.26062 5.26952 5.34325 5.38099 5.47796 5.64705 5.77542 5.87331 6.08704 6.29495 6.32650 6.37929 6.58223 6.92655 7.14634 7.83150 8.28281 9.17691 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028004 B = 0.002097 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.610178 B =13346.066104 C =13850.099490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.604 5.604 3 C -0.264 4.264 4 H 0.077 0.923 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.971 3.029 8 H -0.263 1.263 9 H -0.295 1.295 10 H -0.290 1.290 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.145 4.145 14 C 0.132 3.868 15 N -0.591 5.591 16 C 0.569 3.431 17 O -0.580 6.580 18 C 0.103 3.897 19 C -0.148 4.148 20 C 0.174 3.826 21 N -0.408 5.408 22 C -0.041 4.041 23 C -0.192 4.192 24 C -0.197 4.197 25 C -0.016 4.016 26 C -0.158 4.158 27 C 0.134 3.866 28 N -0.473 5.473 29 C 0.096 3.904 30 H -0.005 1.005 31 H 0.025 0.975 32 H 0.029 0.971 33 H 0.248 0.752 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.139 0.861 39 H 0.166 0.834 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.202 0.798 43 H 0.187 0.813 44 H 0.217 0.783 45 H 0.055 0.945 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.046 -29.581 6.419 31.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.326 5.326 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.799 3.201 8 H -0.188 1.188 9 H -0.223 1.223 10 H -0.217 1.217 11 C 0.059 3.941 12 H 0.094 0.906 13 C -0.185 4.185 14 C 0.011 3.989 15 N -0.322 5.322 16 C 0.357 3.643 17 O -0.461 6.461 18 C -0.034 4.034 19 C -0.172 4.172 20 C 0.072 3.928 21 N -0.082 5.082 22 C -0.166 4.166 23 C -0.216 4.216 24 C -0.221 4.221 25 C -0.140 4.140 26 C -0.179 4.179 27 C -0.025 4.025 28 N -0.185 5.185 29 C -0.029 4.029 30 H 0.013 0.987 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.157 0.843 39 H 0.184 0.816 40 H 0.173 0.827 41 H 0.182 0.818 42 H 0.219 0.781 43 H 0.204 0.796 44 H 0.233 0.767 45 H 0.073 0.927 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.726 -28.422 6.343 29.888 hybrid contribution 0.080 0.718 -1.563 1.722 sum 6.807 -27.704 4.780 28.926 Atomic orbital electron populations 1.20543 0.82517 0.95869 0.97279 1.44011 1.02123 1.00807 1.85652 1.19623 0.99547 0.87032 1.33214 0.90485 1.25969 0.97486 1.02208 0.98953 1.70287 1.12538 1.28437 1.47196 0.85144 0.78752 0.79454 0.76761 1.18756 1.22255 1.21704 1.21589 0.95709 0.84494 0.92322 0.90638 1.23198 1.02831 0.93560 0.98868 1.22161 1.03585 0.96367 0.76820 1.48371 1.66308 1.07874 1.09597 1.18003 0.77499 0.83530 0.85241 1.90758 1.54653 1.85278 1.15386 1.20449 1.00280 0.92282 0.90438 1.21636 1.02124 0.91234 1.02182 1.18157 0.97105 0.85547 0.91960 1.41714 1.53657 1.06807 1.06035 1.22287 1.10608 1.00871 0.82844 1.21395 1.07033 0.92713 1.00412 1.21430 1.08173 1.00845 0.91608 1.22584 1.07774 0.81868 1.01776 1.22509 1.01672 1.03509 0.90244 1.23546 0.91064 0.85202 1.02718 1.67886 1.12283 1.28824 1.09533 1.22779 0.99780 0.80956 0.99403 0.98654 0.95624 0.95256 0.94254 0.88727 0.91162 0.89148 0.89595 0.84281 0.81646 0.82686 0.81779 0.78105 0.79612 0.76666 0.92663 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 7.53 127.77 0.96 10.05 16 2 N -0.60 -29.91 2.97 -695.00 -2.06 -31.98 16 3 C -0.26 -14.31 9.62 84.03 0.81 -13.50 16 4 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 5 C -0.05 -2.87 5.38 84.86 0.46 -2.41 16 6 N -0.94 -55.60 10.12 21.65 0.22 -55.38 16 7 Si 0.97 45.01 29.56 68.60 2.03 47.04 16 8 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 9 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 11 C 0.17 6.71 3.53 46.38 0.16 6.88 16 12 H 0.08 3.04 7.96 -2.39 -0.02 3.02 16 13 C -0.14 -4.43 6.50 31.79 0.21 -4.22 16 14 C 0.13 3.52 5.40 86.73 0.47 3.99 16 15 N -0.59 -20.07 3.33 -814.81 -2.71 -22.78 16 16 C 0.57 19.81 7.84 86.88 0.68 20.49 16 17 O -0.58 -24.29 16.58 -3.77 -0.06 -24.35 16 18 C 0.10 2.71 6.72 41.85 0.28 2.99 16 19 C -0.15 -3.52 9.04 22.73 0.21 -3.31 16 20 C 0.17 3.05 6.65 38.36 0.26 3.31 16 21 N -0.41 -6.98 2.97 -346.09 -1.03 -8.01 16 22 C -0.04 -0.76 10.77 83.16 0.90 0.13 16 23 C -0.19 -3.08 10.86 22.16 0.24 -2.84 16 24 C -0.20 -2.60 10.86 22.16 0.24 -2.36 16 25 C -0.02 -0.19 10.77 83.16 0.90 0.70 16 26 C -0.16 -1.64 9.53 22.54 0.21 -1.43 16 27 C 0.13 1.51 11.17 84.75 0.95 2.46 16 28 N -0.47 -9.54 6.84 -185.14 -1.27 -10.80 16 29 C 0.10 3.86 6.46 86.86 0.56 4.42 16 30 H 0.00 -0.27 7.44 -2.39 -0.02 -0.29 16 31 H 0.03 1.09 6.37 -2.39 -0.02 1.08 16 32 H 0.03 1.58 7.03 -2.39 -0.02 1.56 16 33 H 0.25 14.29 8.31 -92.70 -0.77 13.52 16 34 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.07 2.25 6.46 -2.39 -0.02 2.23 16 36 H 0.09 2.12 7.41 -2.39 -0.02 2.11 16 37 H 0.09 2.05 7.53 -2.39 -0.02 2.03 16 38 H 0.14 3.58 6.42 -2.91 -0.02 3.56 16 39 H 0.17 2.95 7.09 -2.91 -0.02 2.93 16 40 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 42 H 0.20 0.84 7.08 -2.91 -0.02 0.82 16 43 H 0.19 0.40 6.83 -2.91 -0.02 0.38 16 44 H 0.22 0.50 8.06 -2.91 -0.02 0.47 16 45 H 0.06 2.39 6.95 -2.39 -0.02 2.38 16 46 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 Total: -1.00 -74.34 373.37 4.60 -69.74 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.00 Total: 11.17 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 8.48 Total: 25.36 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -6.85 Total: -128.95 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -74.34 4.60 -69.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972686330.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.598 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds