Wall clock time and date at job start Sat Apr 11 2020 06:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99903 * 2 1 4 4 H 1.07996 * 120.00001 * 196.71146 * 3 2 1 5 5 C 1.38816 * 119.99882 * 16.70553 * 3 2 1 6 6 N 1.31609 * 119.99994 * 24.91255 * 5 3 2 7 7 Si 1.86806 * 119.99811 * 204.91489 * 5 3 2 8 8 H 1.48491 * 109.47171 * 94.99421 * 7 5 3 9 9 H 1.48497 * 109.46965 * 214.99624 * 7 5 3 10 10 H 1.48500 * 109.47055 * 334.99215 * 7 5 3 11 11 C 1.46495 * 120.00145 * 179.97438 * 2 1 3 12 12 C 1.53072 * 109.45331 * 299.78824 * 11 2 1 13 13 C 1.53198 * 109.29879 * 181.24187 * 12 11 2 14 14 N 1.46927 * 108.89170 * 305.58172 * 13 12 11 15 15 C 1.34778 * 120.62892 * 233.51331 * 14 13 12 16 16 O 1.21545 * 119.99630 * 358.83572 * 15 14 13 17 17 C 1.47893 * 119.99851 * 178.83518 * 15 14 13 18 18 N 1.32136 * 120.03393 * 38.09731 * 17 15 14 19 19 C 1.31987 * 122.76704 * 179.69767 * 18 17 15 20 20 C 1.37773 * 121.72479 * 0.57965 * 19 18 17 21 21 C 1.40389 * 118.73485 * 359.71903 * 20 19 18 22 22 C 1.40636 * 122.27875 * 179.97438 * 21 20 19 23 23 C 1.36642 * 117.95124 * 180.02562 * 22 21 20 24 24 C 1.39402 * 119.92177 * 0.02562 * 23 22 21 25 25 N 1.31198 * 121.85748 * 359.97438 * 24 23 22 26 26 C 1.33264 * 121.22433 * 0.02562 * 25 24 23 27 27 C 1.46927 * 118.73997 * 53.53003 * 14 13 12 28 28 C 1.53042 * 109.46142 * 59.99937 * 11 2 1 29 29 H 1.09002 * 109.47010 * 278.95334 * 1 2 3 30 30 H 1.08992 * 109.47211 * 38.95579 * 1 2 3 31 31 H 1.09004 * 109.46992 * 158.96302 * 1 2 3 32 32 H 0.97003 * 119.99987 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.45364 * 179.97438 * 11 2 1 34 34 H 1.09000 * 109.39237 * 61.36841 * 12 11 2 35 35 H 1.08997 * 109.62668 * 301.25871 * 12 11 2 36 36 H 1.08998 * 109.58870 * 185.71617 * 13 12 11 37 37 H 1.09001 * 109.58429 * 65.43722 * 13 12 11 38 38 H 1.07998 * 119.13392 * 180.29915 * 19 18 17 39 39 H 1.08002 * 120.63387 * 179.70105 * 20 19 18 40 40 H 1.07999 * 121.02443 * 0.04959 * 22 21 20 41 41 H 1.07999 * 120.04272 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.06872 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.58311 * 66.18280 * 27 14 13 44 44 H 1.08997 * 109.58570 * 186.45950 * 27 14 13 45 45 H 1.08994 * 109.49567 * 58.65971 * 28 11 2 46 46 H 1.09001 * 109.52198 * 298.58414 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1954 1.2057 -0.2689 5 6 1.4995 2.3627 0.3456 6 7 0.4345 2.3237 1.1178 7 14 2.1362 4.0016 -0.2856 8 1 1.4021 4.3752 -1.5210 9 1 1.9270 5.0456 0.7495 10 1 3.5858 3.8866 -0.5867 11 6 2.1975 -1.2687 0.0006 12 6 1.8315 -2.0681 1.2536 13 6 2.6226 -3.3800 1.2662 14 7 2.3850 -4.0910 0.0026 15 6 1.9589 -5.3696 0.0038 16 8 1.7877 -5.9521 1.0567 17 6 1.6995 -6.0638 -1.2761 18 7 2.4905 -5.8551 -2.3138 19 6 2.3126 -6.4498 -3.4786 20 6 1.2721 -7.3271 -3.6927 21 6 0.3862 -7.5940 -2.6368 22 6 -0.7007 -8.4760 -2.7732 23 6 -1.5077 -8.6705 -1.6878 24 6 -1.2401 -8.0027 -0.4937 25 7 -0.2245 -7.1810 -0.3724 26 6 0.6006 -6.9472 -1.3925 27 6 2.6212 -3.3818 -1.2623 28 6 1.8276 -2.0716 -1.2487 29 1 -0.3633 0.1599 1.0152 30 1 -0.3633 0.7991 -0.6461 31 1 -0.3633 -0.9592 -0.3689 32 1 -0.0201 3.1460 1.3590 33 1 3.2691 -1.0691 0.0000 34 1 0.7638 -2.2874 1.2439 35 1 2.0760 -1.4873 2.1429 36 1 2.2921 -3.9979 2.1011 37 1 3.6860 -3.1643 1.3698 38 1 2.9980 -6.2397 -4.2863 39 1 1.1403 -7.8002 -4.6546 40 1 -0.8915 -8.9841 -3.7068 41 1 -2.3522 -9.3403 -1.7550 42 1 -1.8866 -8.1670 0.3557 43 1 3.6842 -3.1641 -1.3661 44 1 2.2923 -4.0021 -2.0960 45 1 2.0688 -1.4908 -2.1390 46 1 0.7604 -2.2928 -1.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985474778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:02 Heat of formation + Delta-G solvation = 77.485632 kcal Electronic energy + Delta-G solvation = -29590.340540 eV Core-core repulsion = 25674.506887 eV Total energy + Delta-G solvation = -3915.833653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65955 -39.74100 -38.26342 -37.37799 -34.97788 -34.09004 -32.24504 -31.80514 -31.11558 -30.33382 -29.60361 -26.07849 -25.92109 -24.75719 -24.48892 -23.59405 -22.62508 -21.86580 -20.24041 -19.19698 -18.52533 -17.86553 -17.39240 -16.71424 -16.57890 -15.86290 -15.48886 -15.05641 -14.95156 -14.70835 -14.46208 -14.20077 -13.91367 -13.59104 -13.49355 -13.36461 -13.21657 -13.01317 -12.86354 -12.58149 -12.20881 -12.06389 -11.57663 -11.45707 -11.14881 -10.90874 -10.77394 -10.71790 -10.40374 -10.29433 -10.18366 -10.12373 -9.97037 -9.77081 -9.67459 -9.55666 -9.30478 -8.77837 -8.47184 -8.31089 -6.77080 -5.69741 -3.06165 -0.34564 0.33054 1.35582 2.46379 2.89969 3.04304 3.42353 3.49897 3.50993 3.69828 3.83095 3.99743 4.10949 4.23215 4.35003 4.43270 4.54816 4.77217 4.86551 4.99771 5.16650 5.22835 5.30553 5.35466 5.42239 5.49689 5.59501 5.59565 5.69973 5.77593 5.84923 5.93442 6.02817 6.17688 6.23228 6.28295 6.35144 6.47174 6.61025 6.70773 6.81059 7.05058 7.07924 7.31601 7.36759 7.53124 7.64407 7.73639 7.86171 8.30198 8.40494 9.25934 9.93483 10.41481 11.35054 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002701 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.981406 B =10365.206003 C =10525.929129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.898 5.898 7 Si 0.895 3.105 8 H -0.290 1.290 9 H -0.294 1.294 10 H -0.279 1.279 11 C 0.180 3.820 12 C -0.145 4.145 13 C 0.115 3.885 14 N -0.587 5.587 15 C 0.572 3.428 16 O -0.514 6.514 17 C 0.153 3.847 18 N -0.437 5.437 19 C 0.073 3.927 20 C -0.127 4.127 21 C -0.083 4.083 22 C -0.063 4.063 23 C -0.155 4.155 24 C 0.134 3.866 25 N -0.432 5.432 26 C 0.105 3.895 27 C 0.105 3.895 28 C -0.148 4.148 29 H 0.033 0.967 30 H 0.031 0.969 31 H 0.003 0.997 32 H 0.251 0.749 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.168 0.832 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.166 0.834 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.410 -24.204 -10.862 26.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.316 5.316 3 C -0.385 4.385 4 H 0.089 0.911 5 C -0.198 4.198 6 N -0.542 5.542 7 Si 0.725 3.275 8 H -0.217 1.217 9 H -0.220 1.220 10 H -0.205 1.205 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.007 4.007 14 N -0.320 5.320 15 C 0.357 3.643 16 O -0.388 6.388 17 C 0.000 4.000 18 N -0.150 5.150 19 C -0.072 4.072 20 C -0.147 4.147 21 C -0.090 4.090 22 C -0.089 4.089 23 C -0.176 4.176 24 C -0.040 4.040 25 N -0.140 5.140 26 C -0.019 4.019 27 C -0.018 4.018 28 C -0.188 4.188 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.022 0.978 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.185 0.815 39 H 0.164 0.836 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.183 0.817 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.092 0.908 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.606 -23.277 -9.455 25.131 hybrid contribution -0.747 -0.001 -1.384 1.572 sum -1.352 -23.278 -10.839 25.713 Atomic orbital electron populations 1.20734 0.82966 0.94983 0.99847 1.44039 1.01694 1.00359 1.85538 1.19225 0.95359 0.84211 1.39714 0.91135 1.24802 0.98529 0.97858 0.98590 1.70176 1.22743 1.26477 1.34841 0.86371 0.78359 0.84289 0.78461 1.21716 1.22041 1.20474 1.20289 0.96008 0.85877 0.90712 1.22528 1.00032 0.94420 1.01519 1.21745 0.99978 0.93684 0.85325 1.48004 1.64209 1.11080 1.08663 1.17523 0.77910 0.81958 0.86893 1.90799 1.51393 1.65768 1.30826 1.21465 0.90828 0.94067 0.93617 1.67607 1.27032 1.20975 0.99365 1.22685 0.96708 0.93342 0.94513 1.22359 0.94784 0.98658 0.98935 1.18949 0.97217 0.98168 0.94657 1.21426 0.92525 0.95302 0.99632 1.22119 1.00736 1.00728 0.94063 1.23287 0.93139 0.90369 0.97162 1.68146 1.02614 1.14068 1.29169 1.19416 0.95733 0.96825 0.89928 1.22156 1.00471 0.93701 0.85507 1.22512 0.99976 0.95135 1.01225 0.94867 0.95011 0.97843 0.93882 0.91817 0.92268 0.90449 0.89493 0.91416 0.81497 0.83607 0.83668 0.83815 0.81667 0.91179 0.88601 0.90826 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.08 59.85 0.48 4.47 16 2 N -0.60 -14.88 2.82 -173.42 -0.49 -15.37 16 3 C -0.26 -7.04 9.59 -15.06 -0.14 -7.18 16 4 H 0.07 1.90 7.85 -52.49 -0.41 1.48 16 5 C 0.00 0.03 4.88 -17.43 -0.09 -0.06 16 6 N -0.90 -26.52 11.06 55.49 0.61 -25.90 16 7 Si 0.89 21.98 29.62 -169.99 -5.04 16.94 16 8 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 C 0.18 3.65 2.53 -67.87 -0.17 3.48 16 12 C -0.14 -2.75 5.36 -26.59 -0.14 -2.90 16 13 C 0.11 1.90 6.42 -3.71 -0.02 1.88 16 14 N -0.59 -9.68 2.97 -173.86 -0.52 -10.20 16 15 C 0.57 9.96 7.33 -12.31 -0.09 9.87 16 16 O -0.51 -10.21 15.53 5.33 0.08 -10.13 16 17 C 0.15 2.30 6.06 -82.55 -0.50 1.79 16 18 N -0.44 -5.53 7.21 -9.55 -0.07 -5.60 16 19 C 0.07 0.66 11.12 -17.66 -0.20 0.46 16 20 C -0.13 -0.98 9.93 -38.94 -0.39 -1.37 16 21 C -0.08 -0.83 5.75 -106.79 -0.61 -1.44 16 22 C -0.06 -0.44 9.94 -39.25 -0.39 -0.83 16 23 C -0.16 -1.04 10.03 -39.72 -0.40 -1.44 16 24 C 0.13 1.30 11.14 -17.39 -0.19 1.10 16 25 N -0.43 -6.18 9.14 -10.75 -0.10 -6.27 16 26 C 0.11 1.46 6.58 -84.62 -0.56 0.90 16 27 C 0.10 1.58 5.98 -3.71 -0.02 1.55 16 28 C -0.15 -2.60 5.33 -26.61 -0.14 -2.74 16 29 H 0.03 0.91 7.26 -51.93 -0.38 0.53 16 30 H 0.03 0.84 7.49 -51.93 -0.39 0.45 16 31 H 0.00 0.07 6.44 -51.93 -0.33 -0.27 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.06 1.30 7.82 -51.93 -0.41 0.89 16 34 H 0.06 1.20 7.67 -51.93 -0.40 0.81 16 35 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.48 7.01 -51.93 -0.36 1.11 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.10 1.36 4.64 -51.93 -0.24 1.12 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.06 1.08 6.74 -51.93 -0.35 0.73 16 LS Contribution 369.83 15.07 5.57 5.57 Total: -1.00 -35.23 369.83 -9.73 -44.95 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -6.21 Total: -1.56 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -3.58 Total: 7.56 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.56 Total: -63.34 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.08 Total: -10.13 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.04 Total: 16.94 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.23 -9.73 -44.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985474778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.438 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds