Wall clock time and date at job start Sat Apr 11 2020 06:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 119.99903 * 2 1 4 4 H 1.07996 * 120.00001 * 196.71146 * 3 2 1 5 5 C 1.38816 * 119.99882 * 16.70553 * 3 2 1 6 6 N 1.31609 * 119.99994 * 24.91255 * 5 3 2 7 7 Si 1.86806 * 119.99811 * 204.91489 * 5 3 2 8 8 H 1.48491 * 109.47171 * 94.99421 * 7 5 3 9 9 H 1.48497 * 109.46965 * 214.99624 * 7 5 3 10 10 H 1.48500 * 109.47055 * 334.99215 * 7 5 3 11 11 C 1.46495 * 120.00145 * 179.97438 * 2 1 3 12 12 C 1.53072 * 109.45331 * 299.78824 * 11 2 1 13 13 C 1.53198 * 109.29879 * 181.24187 * 12 11 2 14 14 N 1.46927 * 108.89170 * 305.58172 * 13 12 11 15 15 C 1.34778 * 120.62892 * 233.51331 * 14 13 12 16 16 O 1.21545 * 119.99630 * 358.83572 * 15 14 13 17 17 C 1.47893 * 119.99851 * 178.83518 * 15 14 13 18 18 N 1.32136 * 120.03393 * 38.09731 * 17 15 14 19 19 C 1.31987 * 122.76704 * 179.69767 * 18 17 15 20 20 C 1.37773 * 121.72479 * 0.57965 * 19 18 17 21 21 C 1.40389 * 118.73485 * 359.71903 * 20 19 18 22 22 C 1.40636 * 122.27875 * 179.97438 * 21 20 19 23 23 C 1.36642 * 117.95124 * 180.02562 * 22 21 20 24 24 C 1.39402 * 119.92177 * 0.02562 * 23 22 21 25 25 N 1.31198 * 121.85748 * 359.97438 * 24 23 22 26 26 C 1.33264 * 121.22433 * 0.02562 * 25 24 23 27 27 C 1.46927 * 118.73997 * 53.53003 * 14 13 12 28 28 C 1.53042 * 109.46142 * 59.99937 * 11 2 1 29 29 H 1.09002 * 109.47010 * 278.95334 * 1 2 3 30 30 H 1.08992 * 109.47211 * 38.95579 * 1 2 3 31 31 H 1.09004 * 109.46992 * 158.96302 * 1 2 3 32 32 H 0.97003 * 119.99987 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.45364 * 179.97438 * 11 2 1 34 34 H 1.09000 * 109.39237 * 61.36841 * 12 11 2 35 35 H 1.08997 * 109.62668 * 301.25871 * 12 11 2 36 36 H 1.08998 * 109.58870 * 185.71617 * 13 12 11 37 37 H 1.09001 * 109.58429 * 65.43722 * 13 12 11 38 38 H 1.07998 * 119.13392 * 180.29915 * 19 18 17 39 39 H 1.08002 * 120.63387 * 179.70105 * 20 19 18 40 40 H 1.07999 * 121.02443 * 0.04959 * 22 21 20 41 41 H 1.07999 * 120.04272 * 179.97438 * 23 22 21 42 42 H 1.08000 * 119.06872 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.58311 * 66.18280 * 27 14 13 44 44 H 1.08997 * 109.58570 * 186.45950 * 27 14 13 45 45 H 1.08994 * 109.49567 * 58.65971 * 28 11 2 46 46 H 1.09001 * 109.52198 * 298.58414 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1954 1.2057 -0.2689 5 6 1.4995 2.3627 0.3456 6 7 0.4345 2.3237 1.1178 7 14 2.1362 4.0016 -0.2856 8 1 1.4021 4.3752 -1.5210 9 1 1.9270 5.0456 0.7495 10 1 3.5858 3.8866 -0.5867 11 6 2.1975 -1.2687 0.0006 12 6 1.8315 -2.0681 1.2536 13 6 2.6226 -3.3800 1.2662 14 7 2.3850 -4.0910 0.0026 15 6 1.9589 -5.3696 0.0038 16 8 1.7877 -5.9521 1.0567 17 6 1.6995 -6.0638 -1.2761 18 7 2.4905 -5.8551 -2.3138 19 6 2.3126 -6.4498 -3.4786 20 6 1.2721 -7.3271 -3.6927 21 6 0.3862 -7.5940 -2.6368 22 6 -0.7007 -8.4760 -2.7732 23 6 -1.5077 -8.6705 -1.6878 24 6 -1.2401 -8.0027 -0.4937 25 7 -0.2245 -7.1810 -0.3724 26 6 0.6006 -6.9472 -1.3925 27 6 2.6212 -3.3818 -1.2623 28 6 1.8276 -2.0716 -1.2487 29 1 -0.3633 0.1599 1.0152 30 1 -0.3633 0.7991 -0.6461 31 1 -0.3633 -0.9592 -0.3689 32 1 -0.0201 3.1460 1.3590 33 1 3.2691 -1.0691 0.0000 34 1 0.7638 -2.2874 1.2439 35 1 2.0760 -1.4873 2.1429 36 1 2.2921 -3.9979 2.1011 37 1 3.6860 -3.1643 1.3698 38 1 2.9980 -6.2397 -4.2863 39 1 1.1403 -7.8002 -4.6546 40 1 -0.8915 -8.9841 -3.7068 41 1 -2.3522 -9.3403 -1.7550 42 1 -1.8866 -8.1670 0.3557 43 1 3.6842 -3.1641 -1.3661 44 1 2.2923 -4.0021 -2.0960 45 1 2.0688 -1.4908 -2.1390 46 1 0.7604 -2.2928 -1.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985474778.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:08:01 Heat of formation + Delta-G solvation = 54.679272 kcal Electronic energy + Delta-G solvation = -29591.329498 eV Core-core repulsion = 25674.506887 eV Total energy + Delta-G solvation = -3916.822611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.45026 -40.94857 -39.10286 -38.86947 -36.71101 -34.83838 -33.93666 -32.61933 -32.28500 -31.62585 -31.12331 -28.06122 -27.13164 -25.98762 -25.19108 -24.73465 -24.05296 -23.32846 -21.52134 -20.32054 -19.61899 -18.77579 -18.61787 -18.33605 -17.63204 -16.99692 -16.86656 -16.49684 -15.85127 -15.74220 -15.53805 -15.39322 -15.22897 -15.12531 -14.89690 -14.50031 -14.32577 -14.16233 -14.01032 -13.84153 -13.59273 -13.22799 -13.17270 -12.98584 -12.86149 -12.61898 -12.39327 -12.20297 -12.08049 -11.85650 -11.80341 -11.66944 -11.38416 -11.27647 -10.84013 -10.57913 -10.35549 -10.23676 -9.73967 -9.43922 -8.85405 -7.83354 -5.22582 -1.07159 -0.34566 0.65614 1.47152 1.49270 1.56571 1.58278 1.80958 2.04886 2.52618 2.90243 3.03295 3.18507 3.26889 3.41021 3.58356 3.63894 3.72141 3.84487 3.93277 4.05480 4.14239 4.20082 4.25838 4.32640 4.35940 4.47185 4.52769 4.59705 4.64480 4.70002 4.78915 4.86114 4.89857 4.95302 4.97194 5.05184 5.10921 5.16452 5.29678 5.37433 5.44500 5.56719 5.61768 5.64797 5.68442 6.28518 6.31213 6.56595 6.87511 7.06108 7.12979 7.88039 8.32678 9.20304 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018638 B = 0.002701 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.981406 B =10365.206003 C =10525.929129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.608 5.608 3 C -0.262 4.262 4 H 0.077 0.923 5 C -0.055 4.055 6 N -0.934 5.934 7 Si 0.962 3.038 8 H -0.290 1.290 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.175 3.825 12 C -0.131 4.131 13 C 0.124 3.876 14 N -0.592 5.592 15 C 0.569 3.431 16 O -0.554 6.554 17 C 0.103 3.897 18 N -0.444 5.444 19 C 0.054 3.946 20 C -0.091 4.091 21 C -0.103 4.103 22 C -0.048 4.048 23 C -0.154 4.154 24 C 0.130 3.870 25 N -0.500 5.500 26 C 0.081 3.919 27 C 0.115 3.885 28 C -0.134 4.134 29 H 0.003 0.997 30 H 0.009 0.991 31 H 0.026 0.974 32 H 0.247 0.753 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.204 0.796 39 H 0.197 0.803 40 H 0.193 0.807 41 H 0.186 0.814 42 H 0.181 0.819 43 H 0.087 0.913 44 H 0.111 0.889 45 H 0.078 0.922 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 -26.678 -14.799 30.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.330 5.330 3 C -0.392 4.392 4 H 0.095 0.905 5 C -0.250 4.250 6 N -0.580 5.580 7 Si 0.791 3.209 8 H -0.217 1.217 9 H -0.226 1.226 10 H -0.189 1.189 11 C 0.068 3.932 12 C -0.171 4.171 13 C 0.001 3.999 14 N -0.324 5.324 15 C 0.356 3.644 16 O -0.431 6.431 17 C -0.048 4.048 18 N -0.158 5.158 19 C -0.093 4.093 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.074 4.074 23 C -0.174 4.174 24 C -0.043 4.043 25 N -0.209 5.209 26 C -0.042 4.042 27 C -0.007 4.007 28 C -0.174 4.174 29 H 0.021 0.979 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.221 0.779 39 H 0.214 0.786 40 H 0.210 0.790 41 H 0.203 0.797 42 H 0.198 0.802 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.097 0.903 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.222 -25.771 -13.404 29.050 hybrid contribution -0.932 0.575 -0.241 1.121 sum -1.154 -25.196 -13.645 28.677 Atomic orbital electron populations 1.20402 0.83466 0.95178 0.97566 1.44277 1.01700 1.01501 1.85523 1.19594 0.95772 0.85250 1.38579 0.90518 1.25598 0.99225 1.01173 0.99045 1.70328 1.24387 1.26902 1.36424 0.85314 0.78448 0.79877 0.77286 1.21681 1.22635 1.18935 1.20508 0.95698 0.84600 0.92370 1.22309 0.99117 0.95434 1.00276 1.21579 1.00472 0.92046 0.85815 1.48082 1.64320 1.11226 1.08734 1.18048 0.76637 0.81861 0.87874 1.90742 1.52950 1.66694 1.32708 1.20993 0.93514 0.96892 0.93355 1.67433 1.26674 1.21630 1.00023 1.23362 0.98197 0.93753 0.93963 1.22950 0.92213 0.96069 0.99852 1.19351 0.99028 0.98849 0.93820 1.22009 0.90510 0.93520 1.01333 1.22512 1.01814 1.00468 0.92637 1.23830 0.91960 0.89252 0.99256 1.68070 1.04879 1.17075 1.30922 1.19593 0.95644 0.97399 0.91604 1.22159 1.00887 0.92197 0.85458 1.22319 0.99417 0.96013 0.99610 0.97914 0.97254 0.95576 0.94418 0.91458 0.94286 0.92140 0.90334 0.89460 0.77902 0.78572 0.78966 0.79662 0.80170 0.89514 0.87156 0.90332 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 8.08 127.77 1.03 10.36 16 2 N -0.61 -31.09 2.82 -702.58 -1.98 -33.07 16 3 C -0.26 -14.55 9.59 84.03 0.81 -13.75 16 4 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 5 C -0.06 -3.15 4.88 84.86 0.41 -2.73 16 6 N -0.93 -56.94 11.06 21.65 0.24 -56.70 16 7 Si 0.96 45.74 29.62 68.60 2.03 47.77 16 8 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 9 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 10 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 11 C 0.18 7.22 2.53 45.03 0.11 7.33 16 12 C -0.13 -5.22 5.36 30.68 0.16 -5.06 16 13 C 0.12 4.25 6.42 86.36 0.55 4.80 16 14 N -0.59 -20.03 2.97 -822.26 -2.45 -22.47 16 15 C 0.57 20.79 7.33 86.80 0.64 21.43 16 16 O -0.55 -23.62 15.53 -3.86 -0.06 -23.68 16 17 C 0.10 3.14 6.06 42.45 0.26 3.40 16 18 N -0.44 -10.73 7.21 -184.14 -1.33 -12.06 16 19 C 0.05 0.79 11.12 84.56 0.94 1.73 16 20 C -0.09 -0.98 9.93 22.68 0.23 -0.76 16 21 C -0.10 -1.77 5.75 -21.27 -0.12 -1.89 16 22 C -0.05 -0.45 9.94 22.48 0.22 -0.23 16 23 C -0.15 -1.54 10.03 22.18 0.22 -1.32 16 24 C 0.13 2.44 11.14 85.07 0.95 3.39 16 25 N -0.50 -14.84 9.14 -187.91 -1.72 -16.56 16 26 C 0.08 2.25 6.58 40.62 0.27 2.52 16 27 C 0.12 3.41 5.98 86.36 0.52 3.93 16 28 C -0.13 -4.67 5.33 30.67 0.16 -4.50 16 29 H 0.00 0.15 7.26 -2.39 -0.02 0.13 16 30 H 0.01 0.49 7.49 -2.39 -0.02 0.47 16 31 H 0.03 1.20 6.44 -2.38 -0.02 1.19 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.07 2.73 7.82 -2.39 -0.02 2.71 16 34 H 0.04 1.68 7.67 -2.39 -0.02 1.66 16 35 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 2.85 7.01 -2.39 -0.02 2.83 16 37 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 39 H 0.20 0.09 8.06 -2.91 -0.02 0.06 16 40 H 0.19 -0.05 8.06 -2.91 -0.02 -0.07 16 41 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.11 3.04 4.64 -2.39 -0.01 3.03 16 45 H 0.08 2.67 8.14 -2.39 -0.02 2.66 16 46 H 0.04 1.61 6.74 -2.39 -0.02 1.59 16 Total: -1.00 -83.49 369.83 3.11 -80.38 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 1.00 Total: 7.74 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 7.36 Total: 28.64 kcal Atomic # 7 Polarization: -133.63 SS G_CDS: -7.23 Total: -140.86 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: -0.06 Total: -23.68 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -83.49 3.11 -80.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985474778.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.063 kcal (2) G-P(sol) polarization free energy of solvation -83.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds