Wall clock time and date at job start Sat Apr 11 2020 06:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36934 * 119.99935 * 2 1 4 4 H 1.08008 * 119.99525 * 209.96246 * 3 2 1 5 5 C 1.38806 * 120.00460 * 29.95314 * 3 2 1 6 6 N 1.31629 * 119.99914 * 7.63703 * 5 3 2 7 7 Si 1.86797 * 120.00205 * 187.63354 * 5 3 2 8 8 H 1.48501 * 109.47094 * 90.00432 * 7 5 3 9 9 H 1.48503 * 109.46909 * 210.00021 * 7 5 3 10 10 H 1.48501 * 109.47163 * 330.00201 * 7 5 3 11 11 C 1.46501 * 119.99633 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.49499 * 179.97438 * 11 2 1 13 13 C 1.53045 * 109.49654 * 299.99924 * 11 2 1 14 14 C 1.53048 * 109.53463 * 181.31760 * 13 11 2 15 15 C 1.53187 * 109.33889 * 298.62427 * 14 13 11 16 16 N 1.46993 * 108.74374 * 54.62106 * 15 14 13 17 17 C 1.34779 * 120.61410 * 126.38650 * 16 15 14 18 18 O 1.21541 * 119.99626 * 175.84138 * 17 16 15 19 19 C 1.47908 * 120.00080 * 355.84145 * 17 16 15 20 20 N 1.32372 * 120.63936 * 74.82333 * 19 17 16 21 21 N 1.28093 * 123.18153 * 179.97438 * 20 19 17 22 22 C 1.31789 * 123.49787 * 0.02562 * 21 20 19 23 23 C 1.40409 * 119.14110 * 359.97438 * 22 21 20 24 24 C 1.40234 * 122.73784 * 179.97438 * 23 22 21 25 25 C 1.36255 * 119.36384 * 180.02562 * 24 23 22 26 26 C 1.39374 * 121.07634 * 0.02562 * 25 24 23 27 27 C 1.36360 * 121.09180 * 0.02562 * 26 25 24 28 28 C 1.39836 * 119.41811 * 359.74088 * 27 26 25 29 29 C 1.46921 * 118.75481 * 306.41139 * 16 15 14 30 30 H 1.08996 * 109.47658 * 265.36398 * 1 2 3 31 31 H 1.09002 * 109.47278 * 25.36374 * 1 2 3 32 32 H 1.09003 * 109.47229 * 145.36187 * 1 2 3 33 33 H 0.96993 * 119.99961 * 179.97438 * 6 5 3 34 34 H 1.09000 * 109.45723 * 61.30267 * 13 11 2 35 35 H 1.08995 * 109.45935 * 301.33960 * 13 11 2 36 36 H 1.09006 * 109.49254 * 58.58791 * 14 13 11 37 37 H 1.08993 * 109.49854 * 178.64998 * 14 13 11 38 38 H 1.09000 * 109.58589 * 174.44116 * 15 14 13 39 39 H 1.08998 * 109.58712 * 294.85740 * 15 14 13 40 40 H 1.08002 * 120.43300 * 179.97438 * 22 21 20 41 41 H 1.07993 * 120.31619 * 0.02562 * 24 23 22 42 42 H 1.08004 * 119.46208 * 179.97438 * 25 24 23 43 43 H 1.08003 * 119.45675 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.29305 * 179.97438 * 27 26 25 45 45 H 1.09007 * 109.58688 * 293.82003 * 29 16 15 46 46 H 1.09001 * 109.58891 * 173.39306 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1215 1.2483 -0.4672 5 6 1.5947 2.3078 0.6002 6 7 0.4840 2.1993 1.2981 7 14 2.4243 3.9714 0.4175 8 1 1.8937 4.6596 -0.7867 9 1 2.1486 4.7967 1.6209 10 1 3.8899 3.7806 0.2732 11 6 2.1974 -1.2688 0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8281 -2.0712 1.2503 14 6 2.6174 -3.3823 1.2685 15 6 2.2497 -4.2130 0.0351 16 7 2.4653 -3.3947 -1.1669 17 6 3.2365 -3.8466 -2.1756 18 8 3.3463 -3.1948 -3.1956 19 6 3.9490 -5.1358 -2.0414 20 7 3.2934 -6.2819 -2.1349 21 7 3.8610 -7.4251 -2.0270 22 6 5.1521 -7.5787 -1.8120 23 6 5.9655 -6.4405 -1.6924 24 6 7.3469 -6.5162 -1.4630 25 6 8.0707 -5.3666 -1.3579 26 6 7.4604 -4.1190 -1.4742 27 6 6.1196 -4.0090 -1.6962 28 6 5.3456 -5.1676 -1.8145 29 6 1.8248 -2.0749 -1.2476 30 1 -0.3634 -0.0831 1.0242 31 1 -0.3634 0.9286 -0.4402 32 1 -0.3634 -0.8455 -0.5841 33 1 0.0964 2.9831 1.7178 34 1 0.7604 -2.2903 1.2388 35 1 2.0696 -1.4895 2.1399 36 1 3.6853 -3.1641 1.2550 37 1 2.3719 -3.9423 2.1708 38 1 2.8802 -5.1010 -0.0086 39 1 1.2021 -4.5086 0.0927 40 1 5.5791 -8.5673 -1.7288 41 1 7.8323 -7.4765 -1.3705 42 1 9.1347 -5.4231 -1.1808 43 1 8.0594 -3.2246 -1.3869 44 1 5.6599 -3.0356 -1.7838 45 1 0.7425 -2.1962 -1.2946 46 1 2.1750 -1.5526 -2.1380 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027487591.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:22 Heat of formation + Delta-G solvation = 72.356880 kcal Electronic energy + Delta-G solvation = -29847.339207 eV Core-core repulsion = 25931.283154 eV Total energy + Delta-G solvation = -3916.056053 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.81804 -39.82506 -38.35271 -37.52068 -35.14125 -33.79940 -32.34979 -32.15390 -31.38403 -30.80700 -28.89241 -26.44926 -25.98955 -24.94718 -24.55721 -23.67894 -22.94565 -21.69144 -20.40376 -18.91983 -18.66959 -18.36558 -17.50580 -16.76036 -16.57173 -16.08486 -15.38513 -15.12146 -14.93167 -14.76215 -14.56830 -14.23316 -14.10474 -13.96141 -13.63862 -13.41965 -12.96381 -12.71001 -12.68295 -12.62277 -12.36723 -12.03696 -11.97842 -11.50785 -11.12923 -11.03988 -10.90366 -10.88356 -10.66760 -10.43388 -10.32440 -10.16696 -10.02965 -9.98355 -9.91261 -9.76521 -9.72756 -8.85371 -8.63608 -8.44190 -6.69591 -5.78182 -3.29418 -0.25384 0.23346 1.30521 2.35312 2.53832 2.82670 3.36419 3.42984 3.43826 3.48987 3.81300 3.96800 4.01666 4.19487 4.31074 4.46011 4.61095 4.65987 4.78890 4.90995 5.06671 5.13391 5.26255 5.29171 5.34071 5.41572 5.43394 5.50358 5.58828 5.69940 5.81293 5.82687 5.87377 5.94112 5.96902 6.12601 6.17939 6.25224 6.33845 6.46728 6.57584 6.78423 6.90310 6.97812 7.33903 7.39196 7.67495 7.78695 8.02773 8.41882 8.44712 9.20796 9.81031 10.33546 11.27956 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016113 B = 0.003120 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.311091 B = 8971.962227 C = 9819.366373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.589 5.589 3 C -0.260 4.260 4 H 0.066 0.934 5 C 0.009 3.991 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.131 4.131 14 C -0.132 4.132 15 C 0.112 3.888 16 N -0.585 5.585 17 C 0.577 3.423 18 O -0.522 6.522 19 C 0.093 3.907 20 N -0.233 5.233 21 N -0.262 5.262 22 C 0.090 3.910 23 C -0.080 4.080 24 C -0.093 4.093 25 C -0.094 4.094 26 C -0.093 4.093 27 C -0.082 4.082 28 C -0.055 4.055 29 C 0.095 3.905 30 H 0.021 0.979 31 H 0.053 0.947 32 H -0.004 1.004 33 H 0.253 0.747 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.180 0.820 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.138 0.862 44 H 0.142 0.858 45 H 0.071 0.929 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.636 -19.261 -1.537 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.311 5.311 3 C -0.390 4.390 4 H 0.083 0.917 5 C -0.190 4.190 6 N -0.548 5.548 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.171 4.171 14 C -0.171 4.171 15 C -0.011 4.011 16 N -0.317 5.317 17 C 0.360 3.640 18 O -0.397 6.397 19 C -0.066 4.066 20 N -0.068 5.068 21 N -0.092 5.092 22 C -0.084 4.084 23 C -0.088 4.088 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.112 4.112 27 C -0.102 4.102 28 C -0.062 4.062 29 C -0.028 4.028 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.197 0.803 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.089 0.911 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 11.956 -19.511 -2.246 22.993 hybrid contribution 1.739 1.506 0.303 2.320 sum 13.694 -18.006 -1.943 22.705 Atomic orbital electron populations 1.20776 0.82804 0.97192 0.97706 1.43798 1.01677 0.99873 1.85714 1.19179 1.02714 0.86881 1.30176 0.91676 1.25178 0.97876 0.98956 0.96998 1.70027 1.20799 1.28635 1.35304 0.86257 0.79135 0.84006 0.77123 1.21354 1.21680 1.20415 1.20608 0.96515 0.86427 0.90455 0.91654 1.22110 0.99549 0.94404 1.01050 1.21954 1.01013 0.97589 0.96543 1.21776 1.01925 0.93014 0.84422 1.48122 1.47075 1.19185 1.17291 1.17490 0.79114 0.83446 0.83938 1.90849 1.63249 1.57315 1.28239 1.23056 0.91684 0.95979 0.95848 1.72974 1.31001 0.93405 1.09399 1.72671 1.10419 1.15861 1.10298 1.24768 0.91303 0.99295 0.93066 1.18852 0.95795 0.93119 1.00992 1.20977 0.91492 0.99757 0.99036 1.21155 1.00795 0.92151 0.97271 1.21192 0.94652 0.98488 0.96909 1.21108 0.94283 0.97903 0.96927 1.18590 0.93054 0.94683 0.99896 1.22572 0.97407 0.80404 1.02374 0.96111 0.92821 0.98550 0.93647 0.92256 0.91233 0.91903 0.91109 0.91281 0.90550 0.80260 0.84022 0.84665 0.84458 0.84061 0.91081 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.82 8.10 59.85 0.48 4.30 16 2 N -0.59 -14.31 2.79 -173.34 -0.48 -14.80 16 3 C -0.26 -6.99 9.50 -15.06 -0.14 -7.14 16 4 H 0.07 1.73 7.84 -52.48 -0.41 1.32 16 5 C 0.01 0.25 5.13 -17.43 -0.09 0.16 16 6 N -0.90 -25.79 10.93 55.49 0.61 -25.18 16 7 Si 0.90 21.54 29.56 -169.99 -5.02 16.51 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 C 0.17 3.37 2.75 -67.81 -0.19 3.18 16 12 H 0.07 1.35 7.89 -51.93 -0.41 0.94 16 13 C -0.13 -2.28 5.15 -26.68 -0.14 -2.42 16 14 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 15 C 0.11 1.52 6.35 -3.68 -0.02 1.50 16 16 N -0.58 -9.45 2.97 -173.81 -0.52 -9.97 16 17 C 0.58 9.83 6.22 -12.30 -0.08 9.76 16 18 O -0.52 -10.46 16.53 5.33 0.09 -10.37 16 19 C 0.09 1.39 4.83 -82.42 -0.40 0.99 16 20 N -0.23 -3.56 10.94 33.56 0.37 -3.19 16 21 N -0.26 -3.45 11.41 30.90 0.35 -3.10 16 22 C 0.09 0.85 11.20 -16.75 -0.19 0.66 16 23 C -0.08 -0.78 5.75 -106.85 -0.61 -1.40 16 24 C -0.09 -0.60 9.84 -39.55 -0.39 -0.99 16 25 C -0.09 -0.59 9.95 -39.87 -0.40 -0.99 16 26 C -0.09 -0.76 9.95 -39.84 -0.40 -1.16 16 27 C -0.08 -0.93 9.45 -39.66 -0.37 -1.31 16 28 C -0.05 -0.68 5.77 -106.56 -0.61 -1.30 16 29 C 0.10 1.75 5.77 -3.71 -0.02 1.73 16 30 H 0.02 0.52 7.77 -51.93 -0.40 0.12 16 31 H 0.05 1.40 7.03 -51.93 -0.36 1.04 16 32 H 0.00 -0.08 6.35 -51.93 -0.33 -0.41 16 33 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 34 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.90 6.00 -51.93 -0.31 0.59 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.18 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 42 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 44 H 0.14 1.76 7.33 -52.49 -0.38 1.38 16 45 H 0.07 1.30 6.49 -51.92 -0.34 0.97 16 46 H 0.09 1.88 7.03 -51.93 -0.36 1.52 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -32.97 372.79 -8.96 -41.92 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.24 Total: -1.08 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: -3.73 Total: 3.63 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.33 Total: -56.24 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.97 -8.96 -41.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027487591.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.280 kcal (2) G-P(sol) polarization free energy of solvation -32.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds