Wall clock time and date at job start Sat Apr 11 2020 06:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36932 * 120.00149 * 2 1 4 4 H 1.08001 * 120.00464 * 209.73053 * 3 2 1 5 5 C 1.38811 * 119.99731 * 29.73129 * 3 2 1 6 6 N 1.31611 * 120.00299 * 7.77206 * 5 3 2 7 7 Si 1.86810 * 119.99834 * 187.76991 * 5 3 2 8 8 H 1.48502 * 109.46969 * 0.02562 * 7 5 3 9 9 H 1.48500 * 109.47072 * 120.00100 * 7 5 3 10 10 H 1.48499 * 109.46955 * 240.00037 * 7 5 3 11 11 C 1.46503 * 119.99675 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.49546 * 180.02562 * 11 2 1 13 13 C 1.53032 * 109.50165 * 59.99555 * 11 2 1 14 14 C 1.53035 * 109.53992 * 178.68219 * 13 11 2 15 15 C 1.53196 * 109.31205 * 61.36772 * 14 13 11 16 16 N 1.46920 * 108.77332 * 305.36691 * 15 14 13 17 17 C 1.34779 * 120.62872 * 233.58322 * 16 15 14 18 18 O 1.21545 * 119.99965 * 184.15525 * 17 16 15 19 19 C 1.47917 * 120.00003 * 4.16133 * 17 16 15 20 20 N 1.32382 * 120.63154 * 285.68384 * 19 17 16 21 21 N 1.28091 * 123.17650 * 179.72798 * 20 19 17 22 22 C 1.31800 * 123.49932 * 0.02562 * 21 20 19 23 23 C 1.40404 * 119.13617 * 0.02562 * 22 21 20 24 24 C 1.40235 * 122.73310 * 180.02562 * 23 22 21 25 25 C 1.36259 * 119.36165 * 179.97438 * 24 23 22 26 26 C 1.39380 * 121.07814 * 359.97438 * 25 24 23 27 27 C 1.36357 * 121.08837 * 359.97438 * 26 25 24 28 28 C 1.39839 * 119.41873 * 0.02562 * 27 26 25 29 29 C 1.46924 * 118.74109 * 53.85842 * 16 15 14 30 30 H 1.08996 * 109.47292 * 265.39727 * 1 2 3 31 31 H 1.09004 * 109.47111 * 25.39953 * 1 2 3 32 32 H 1.09002 * 109.47131 * 145.39358 * 1 2 3 33 33 H 0.97003 * 119.99995 * 179.97438 * 6 5 3 34 34 H 1.09004 * 109.46179 * 58.66378 * 13 11 2 35 35 H 1.08999 * 109.46253 * 298.71120 * 13 11 2 36 36 H 1.09004 * 109.50013 * 301.41516 * 14 13 11 37 37 H 1.09006 * 109.49898 * 181.31814 * 14 13 11 38 38 H 1.09002 * 109.58343 * 185.58007 * 15 14 13 39 39 H 1.08997 * 109.70101 * 65.22724 * 15 14 13 40 40 H 1.07996 * 120.43036 * 179.97438 * 22 21 20 41 41 H 1.07992 * 120.32179 * 359.95203 * 24 23 22 42 42 H 1.08009 * 119.46157 * 180.02562 * 25 24 23 43 43 H 1.08000 * 119.45470 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.29330 * 179.97438 * 27 26 25 45 45 H 1.09002 * 109.58793 * 65.92808 * 29 16 15 46 46 H 1.09001 * 109.58808 * 186.35223 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1231 1.2475 -0.4638 5 6 1.5927 2.3088 0.5962 6 7 0.4812 2.2012 1.2927 7 14 2.4208 3.9730 0.4100 8 1 3.6470 3.8262 -0.4148 9 1 1.4881 4.9184 -0.2545 10 1 2.7853 4.4973 1.7507 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8282 -2.0713 -1.2501 14 6 2.6175 -3.3823 -1.2683 15 6 2.2495 -4.2123 -0.0344 16 7 2.4652 -3.3947 1.1670 17 6 3.2356 -3.8469 2.1762 18 8 3.3456 -3.1949 3.1961 19 6 3.9474 -5.1367 2.0426 20 7 3.2892 -6.2822 2.1260 21 7 3.8551 -7.4257 2.0126 22 6 5.1470 -7.5803 1.8022 23 6 5.9630 -6.4428 1.6944 24 6 7.3453 -6.5197 1.4706 25 6 8.0718 -5.3708 1.3769 26 6 7.4633 -4.1227 1.4992 27 6 6.1217 -4.0117 1.7161 28 6 5.3442 -5.1696 1.8178 29 6 1.8202 -2.0772 1.2501 30 1 -0.3634 -0.0825 1.0243 31 1 -0.3633 0.9284 -0.4408 32 1 -0.3633 -0.8459 -0.5837 33 1 0.0922 2.9859 1.7096 34 1 2.0697 -1.4897 -2.1398 35 1 0.7605 -2.2903 -1.2387 36 1 3.6854 -3.1643 -1.2549 37 1 2.3714 -3.9427 -2.1703 38 1 2.8801 -5.1004 0.0099 39 1 1.2025 -4.5101 -0.0907 40 1 5.5724 -8.5691 1.7148 41 1 7.8293 -7.4802 1.3739 42 1 9.1364 -5.4280 1.2042 43 1 8.0643 -3.2289 1.4201 44 1 5.6636 -3.0381 1.8093 45 1 0.7383 -2.2022 1.2952 46 1 2.1674 -1.5560 2.1423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027487592.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:06:27 Heat of formation + Delta-G solvation = 72.306130 kcal Electronic energy + Delta-G solvation = -29896.875419 eV Core-core repulsion = 25980.817166 eV Total energy + Delta-G solvation = -3916.058253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -41.78706 -39.76512 -38.32680 -37.48961 -35.12562 -33.76765 -32.36830 -32.13749 -31.32028 -30.78342 -28.87725 -26.41416 -25.99661 -24.92276 -24.53303 -23.66451 -22.90817 -21.71702 -20.35811 -18.91409 -18.64006 -18.34011 -17.47276 -16.77103 -16.52558 -16.02012 -15.32134 -15.09239 -14.92218 -14.79297 -14.49311 -14.21363 -14.15033 -13.91691 -13.58684 -13.48009 -12.93939 -12.72240 -12.63128 -12.57232 -12.35098 -11.97421 -11.92173 -11.47159 -11.24333 -11.09254 -10.89264 -10.84720 -10.65442 -10.41046 -10.39055 -10.20354 -10.01002 -9.95145 -9.82532 -9.74594 -9.70904 -8.82720 -8.60187 -8.41516 -6.69616 -5.78348 -3.29171 -0.22723 0.25731 1.33048 2.41268 2.57138 2.88492 3.35953 3.42950 3.44852 3.51650 3.85185 3.99838 4.04547 4.21977 4.33506 4.45567 4.64043 4.68325 4.81569 4.90666 5.07735 5.12037 5.27296 5.28961 5.36569 5.39804 5.46231 5.50533 5.60320 5.70671 5.82830 5.86707 5.89846 5.96394 5.97834 6.09869 6.20231 6.27631 6.34799 6.45660 6.59887 6.76856 6.89592 6.93788 7.33628 7.46559 7.67281 7.78547 8.10358 8.41516 8.47611 9.20590 9.80976 10.33598 11.27708 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015454 B = 0.003206 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.340847 B = 8732.779654 C = 9534.191808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.588 5.588 3 C -0.261 4.261 4 H 0.066 0.934 5 C 0.010 3.990 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.289 1.289 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.134 4.134 14 C -0.130 4.130 15 C 0.111 3.889 16 N -0.586 5.586 17 C 0.575 3.425 18 O -0.519 6.519 19 C 0.094 3.906 20 N -0.234 5.234 21 N -0.261 5.261 22 C 0.089 3.911 23 C -0.080 4.080 24 C -0.093 4.093 25 C -0.094 4.094 26 C -0.094 4.094 27 C -0.082 4.082 28 C -0.055 4.055 29 C 0.097 3.903 30 H 0.020 0.980 31 H 0.053 0.947 32 H -0.002 1.002 33 H 0.254 0.746 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.180 0.820 41 H 0.142 0.858 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.068 0.932 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.569 -19.126 -4.057 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.310 5.310 3 C -0.391 4.391 4 H 0.084 0.916 5 C -0.190 4.190 6 N -0.545 5.545 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.215 1.215 11 C 0.060 3.940 12 H 0.084 0.916 13 C -0.173 4.173 14 C -0.169 4.169 15 C -0.012 4.012 16 N -0.319 5.319 17 C 0.358 3.642 18 O -0.394 6.394 19 C -0.065 4.065 20 N -0.068 5.068 21 N -0.092 5.092 22 C -0.086 4.086 23 C -0.087 4.087 24 C -0.113 4.113 25 C -0.114 4.114 26 C -0.113 4.113 27 C -0.102 4.102 28 C -0.063 4.063 29 C -0.025 4.025 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.016 0.984 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.197 0.803 41 H 0.159 0.841 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.086 0.914 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 11.885 -19.370 -3.183 22.947 hybrid contribution 1.736 1.496 -0.139 2.295 sum 13.620 -17.874 -3.322 22.716 Atomic orbital electron populations 1.20782 0.82769 0.97287 0.97723 1.43864 1.01727 0.99909 1.85455 1.19204 1.02679 0.86690 1.30514 0.91612 1.25213 0.97836 0.99051 0.96892 1.70028 1.20627 1.28602 1.35214 0.86195 0.78890 0.84106 0.77398 1.20243 1.21579 1.21545 1.20757 0.96527 0.86301 0.90454 0.91648 1.22082 0.99824 0.94781 1.00625 1.21915 1.00955 0.97370 0.96666 1.21735 1.01882 0.93039 0.84517 1.48240 1.47060 1.19460 1.17101 1.17528 0.79288 0.83402 0.84013 1.90865 1.63107 1.57201 1.28185 1.23109 0.91680 0.96040 0.95633 1.72982 1.31012 0.93411 1.09435 1.72672 1.10487 1.15885 1.10200 1.24760 0.91300 0.99278 0.93217 1.18849 0.95770 0.93126 1.00993 1.20972 0.91482 0.99737 0.99136 1.21154 1.00765 0.92162 0.97294 1.21189 0.94673 0.98461 0.97001 1.21126 0.94244 0.97972 0.96810 1.18596 0.93085 0.94668 0.99913 1.22807 0.97108 0.79886 1.02748 0.96184 0.92777 0.98414 0.93603 0.91548 0.92020 0.91856 0.91083 0.91330 0.90634 0.80294 0.84050 0.84694 0.84473 0.84000 0.91357 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 7.98 59.85 0.48 4.27 16 2 N -0.59 -14.28 2.80 -173.09 -0.48 -14.76 16 3 C -0.26 -7.02 9.51 -15.06 -0.14 -7.16 16 4 H 0.07 1.74 7.84 -52.49 -0.41 1.32 16 5 C 0.01 0.26 5.13 -17.43 -0.09 0.17 16 6 N -0.90 -25.98 10.92 55.49 0.61 -25.38 16 7 Si 0.90 21.56 29.56 -169.99 -5.03 16.53 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.17 3.36 2.76 -67.59 -0.19 3.18 16 12 H 0.07 1.35 7.89 -51.93 -0.41 0.94 16 13 C -0.13 -2.16 5.10 -26.70 -0.14 -2.30 16 14 C -0.13 -1.68 6.08 -26.61 -0.16 -1.85 16 15 C 0.11 1.52 6.34 -3.71 -0.02 1.50 16 16 N -0.59 -9.83 2.97 -173.59 -0.51 -10.34 16 17 C 0.57 10.23 6.22 -12.30 -0.08 10.16 16 18 O -0.52 -11.01 16.53 5.33 0.09 -10.92 16 19 C 0.09 1.45 4.84 -82.42 -0.40 1.05 16 20 N -0.23 -3.66 10.91 33.56 0.37 -3.29 16 21 N -0.26 -3.52 11.42 30.90 0.35 -3.17 16 22 C 0.09 0.86 11.20 -16.75 -0.19 0.67 16 23 C -0.08 -0.80 5.75 -106.85 -0.61 -1.42 16 24 C -0.09 -0.63 9.84 -39.54 -0.39 -1.02 16 25 C -0.09 -0.61 9.95 -39.87 -0.40 -1.01 16 26 C -0.09 -0.79 9.95 -39.83 -0.40 -1.19 16 27 C -0.08 -0.95 9.45 -39.66 -0.37 -1.33 16 28 C -0.05 -0.71 5.77 -106.57 -0.61 -1.32 16 29 C 0.10 1.90 5.80 -3.49 -0.02 1.88 16 30 H 0.02 0.51 7.77 -51.93 -0.40 0.11 16 31 H 0.05 1.40 7.02 -51.93 -0.36 1.04 16 32 H 0.00 -0.05 6.47 -51.93 -0.34 -0.39 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 1.00 6.75 -51.93 -0.35 0.65 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.90 5.98 -51.93 -0.31 0.59 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.18 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.14 1.85 7.33 -52.48 -0.38 1.46 16 45 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 46 H 0.09 2.15 7.03 -51.93 -0.36 1.79 16 LS Contribution 372.80 15.07 5.62 5.62 Total: -1.00 -33.31 372.80 -8.97 -42.28 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -6.24 Total: -0.86 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -3.73 Total: 4.29 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.33 Total: -56.94 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.31 -8.97 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027487592.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.588 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds